Wall clock time and date at job start Wed Apr 1 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35316 * 125.86705 * 2 1 4 4 C 1.35343 * 106.17631 * 180.11618 * 3 2 1 5 5 C 1.50703 * 126.75142 * 179.84992 * 4 3 2 6 6 C 1.53005 * 109.46742 * 124.71697 * 5 4 3 7 7 C 1.50703 * 109.46742 * 180.02562 * 6 5 4 8 8 O 1.21274 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99709 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.55154 * 179.97438 * 9 7 6 11 11 C 1.53342 * 108.68473 * 125.67290 * 10 9 7 12 12 C 1.52110 * 109.44249 * 53.30481 * 11 10 9 13 13 C 1.54385 * 110.50739 * 64.08966 * 12 11 10 14 14 C 1.54457 * 102.87109 * 83.33374 * 13 12 11 15 15 N 1.47083 * 107.29725 * 21.50085 * 14 13 12 16 16 C 1.36935 * 125.62931 * 180.96847 * 15 14 13 17 17 H 1.08003 * 119.99937 * 168.95343 * 16 15 14 18 18 C 1.38811 * 119.99964 * 348.94815 * 16 15 14 19 19 N 1.31619 * 119.99929 * 165.65470 * 18 16 15 20 20 Si 1.86799 * 120.00069 * 345.65523 * 18 16 15 21 21 H 1.48500 * 109.47088 * 185.28736 * 20 18 16 22 22 H 1.48495 * 109.46844 * 305.28614 * 20 18 16 23 23 H 1.48497 * 109.46908 * 65.28631 * 20 18 16 24 24 C 1.47575 * 108.74515 * 1.23423 * 15 14 13 25 25 C 1.52103 * 111.59976 * 300.69054 * 12 11 10 26 26 C 1.46928 * 120.55004 * 0.02562 * 9 7 6 27 27 N 1.33778 * 106.49680 * 359.59549 * 4 3 2 28 28 N 1.28634 * 108.88151 * 0.25767 * 27 4 3 29 29 H 1.09000 * 109.47516 * 270.32437 * 1 2 3 30 30 H 1.09004 * 109.47702 * 30.32716 * 1 2 3 31 31 H 1.09008 * 109.47493 * 150.32619 * 1 2 3 32 32 H 1.08004 * 126.91065 * 359.97438 * 3 2 1 33 33 H 1.08991 * 109.46942 * 4.71747 * 5 4 3 34 34 H 1.09004 * 109.47040 * 244.71316 * 5 4 3 35 35 H 1.08997 * 109.46938 * 60.00169 * 6 5 4 36 36 H 1.08993 * 109.47178 * 300.00154 * 6 5 4 37 37 H 1.08999 * 109.60337 * 5.91689 * 10 9 7 38 38 H 1.09002 * 109.73805 * 245.50682 * 10 9 7 39 39 H 1.08999 * 109.47461 * 293.31423 * 11 10 9 40 40 H 1.08999 * 109.48299 * 173.29949 * 11 10 9 41 41 H 1.08995 * 110.73888 * 324.98680 * 13 12 11 42 42 H 1.09004 * 110.73381 * 201.67143 * 13 12 11 43 43 H 1.09003 * 109.87682 * 262.08138 * 14 13 12 44 44 H 1.09002 * 109.88538 * 140.92812 * 14 13 12 45 45 H 0.97002 * 120.00420 * 354.93210 * 19 18 16 46 46 H 1.09003 * 110.37719 * 95.25320 * 24 15 14 47 47 H 1.08995 * 110.38134 * 217.60924 * 24 15 14 48 48 H 1.08994 * 109.47603 * 179.28981 * 25 12 11 49 49 H 1.09001 * 109.48068 * 299.31611 * 25 12 11 50 50 H 1.08992 * 109.60702 * 354.08207 * 26 9 7 51 51 H 1.08995 * 109.60156 * 114.56724 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 -0.0026 5 6 4.7879 1.4736 -0.0069 6 6 5.6700 1.0723 1.1772 7 6 6.9256 1.9058 1.1733 8 8 7.0981 2.7383 0.3085 9 7 7.8567 1.7260 2.1310 10 6 9.0855 2.5315 2.1386 11 6 9.2230 3.2048 3.5094 12 6 9.1300 2.1513 4.6026 13 6 10.3124 1.1636 4.5040 14 6 11.4423 1.9037 5.2533 15 7 10.8063 2.8929 6.1367 16 6 11.4646 3.7676 6.9593 17 1 10.9241 4.5728 7.4346 18 6 12.8267 3.6193 7.1824 19 7 13.5142 4.5986 7.7306 20 14 13.6837 2.0298 6.7045 21 1 15.0967 2.0731 7.1596 22 1 12.9923 0.8826 7.3455 23 1 13.6436 1.8702 5.2287 24 6 9.3415 2.7829 5.9950 25 6 7.8059 1.4046 4.5494 26 6 7.6603 0.7204 3.1841 27 7 3.4576 -0.6951 0.0050 28 7 2.2191 -1.0430 0.0064 29 1 -0.3634 0.0058 1.0276 30 1 -0.3635 0.8870 -0.5189 31 1 -0.3634 -0.8929 -0.5088 32 1 1.9380 2.1282 -0.0004 33 1 4.5247 2.5279 0.0770 34 1 5.3310 1.3074 -0.9373 35 1 5.9331 0.0179 1.0933 36 1 5.1269 1.2384 2.1075 37 1 9.0282 3.2933 1.3611 38 1 9.9477 1.8893 1.9586 39 1 8.4230 3.9338 3.6381 40 1 10.1874 3.7089 3.5716 41 1 10.5870 0.9930 3.4631 42 1 10.0721 0.2232 5.0000 43 1 12.0921 2.4087 4.5386 44 1 12.0203 1.1948 5.8462 45 1 13.0860 5.4500 7.9112 46 1 8.9323 2.1382 6.7729 47 1 8.8808 3.7698 6.0375 48 1 7.7812 0.6519 5.3373 49 1 6.9858 2.1081 4.6928 50 1 6.6636 0.2884 3.0960 51 1 8.4112 -0.0634 3.0858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035261220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:42 Heat of formation + Delta-G solvation = 68.828648 kcal Electronic energy + Delta-G solvation = -30807.602140 eV Core-core repulsion = 26744.032745 eV Total energy + Delta-G solvation = -4063.569395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.18436 -41.63434 -40.10649 -37.38998 -36.08838 -34.94028 -34.45190 -33.03959 -32.36205 -31.01852 -30.61742 -28.81227 -28.53828 -26.30519 -25.34397 -24.11451 -24.03639 -22.99561 -22.32490 -21.88350 -20.65179 -19.78511 -18.84971 -18.28783 -17.74309 -17.53125 -17.04931 -16.81648 -16.79454 -16.58888 -15.69123 -15.55090 -15.27149 -15.18474 -14.96378 -14.80672 -14.59993 -14.25226 -14.11026 -13.93550 -13.82238 -13.59415 -13.47022 -13.24804 -13.04278 -12.92449 -12.85424 -12.57865 -12.54671 -12.28178 -12.14146 -11.89242 -11.67182 -11.61092 -11.56161 -11.42555 -11.29282 -10.96786 -10.95200 -10.73698 -10.61160 -10.09941 -9.58255 -9.04832 -8.64409 -5.45718 0.67814 1.40485 1.49784 1.49969 1.61070 1.67441 1.72385 2.07335 2.55611 3.13050 3.32691 3.34441 3.55537 3.61082 3.74916 3.77246 3.87587 4.05048 4.08821 4.13603 4.19148 4.26001 4.28622 4.33126 4.36667 4.43300 4.46780 4.59077 4.63792 4.67007 4.68487 4.73439 4.77010 4.80050 4.82126 4.91539 4.93804 5.04993 5.07140 5.08914 5.11658 5.15903 5.25664 5.28701 5.41135 5.43722 5.54965 5.63995 5.71873 6.11562 6.47528 6.84091 7.20739 7.47266 7.53531 8.12235 8.88403 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.001957 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.532349 B =14307.373938 C =14447.860672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.033 4.033 4 C -0.036 4.036 5 C -0.009 4.009 6 C -0.122 4.122 7 C 0.514 3.486 8 O -0.585 6.585 9 N -0.607 5.607 10 C 0.119 3.881 11 C -0.104 4.104 12 C -0.058 4.058 13 C -0.111 4.111 14 C 0.100 3.900 15 N -0.632 5.632 16 C -0.306 4.306 17 H 0.042 0.958 18 C -0.084 4.084 19 N -0.967 5.967 20 Si 1.113 2.887 21 H -0.316 1.316 22 H -0.283 1.283 23 H -0.252 1.252 24 C 0.140 3.860 25 C -0.111 4.111 26 C 0.108 3.892 27 N -0.301 5.301 28 N -0.125 5.125 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.021 0.979 45 H 0.246 0.754 46 H 0.033 0.967 47 H 0.026 0.974 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.113 0.887 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.871 -11.874 -17.790 36.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.185 4.185 4 C -0.175 4.175 5 C -0.049 4.049 6 C -0.162 4.162 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.148 4.148 14 C -0.024 4.024 15 N -0.359 5.359 16 C -0.435 4.435 17 H 0.060 0.940 18 C -0.276 4.276 19 N -0.612 5.612 20 Si 0.941 3.059 21 H -0.245 1.245 22 H -0.211 1.211 23 H -0.178 1.178 24 C 0.016 3.984 25 C -0.149 4.149 26 C -0.014 4.014 27 N -0.167 5.167 28 N -0.104 5.104 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.123 0.877 32 H 0.246 0.754 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.114 0.886 49 H 0.088 0.912 50 H 0.131 0.869 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.369 -13.742 -18.140 36.369 hybrid contribution -1.069 2.841 0.736 3.124 sum -29.438 -10.901 -17.404 35.893 Atomic orbital electron populations 1.22729 0.69914 1.07702 1.06662 1.47649 1.10993 1.04309 1.45333 1.24017 0.89984 0.96188 1.08301 1.22189 0.96452 0.90973 1.07914 1.19512 0.89233 0.97857 0.98310 1.21574 0.92516 1.00795 1.01322 1.21142 0.85125 0.83114 0.80191 1.90670 1.79541 1.37699 1.38700 1.48216 1.19472 1.38320 1.27941 1.21508 0.86807 0.95270 0.96771 1.21514 1.01417 0.97376 0.93980 1.21022 0.96082 0.95305 0.93527 1.22680 0.93163 0.97983 1.00982 1.22141 0.96929 0.91004 0.92287 1.44939 1.02374 1.41153 1.47476 1.20050 0.93353 1.06254 1.23855 0.94046 1.27155 0.94314 1.06885 0.99218 1.70997 1.38075 1.03803 1.48328 0.83334 0.72922 0.71947 0.77664 1.24519 1.21115 1.17762 1.21767 0.83705 0.97546 0.95411 1.21722 0.95051 1.00087 0.98075 1.22038 1.04504 0.89917 0.84942 1.74985 1.10302 1.13497 1.17886 1.78238 0.96680 1.13698 1.21755 0.87457 0.85212 0.87688 0.75375 0.88507 0.90888 0.87536 0.87070 0.90514 0.90312 0.92546 0.92800 0.88813 0.88917 0.95368 0.96146 0.94560 0.94963 0.95526 0.88604 0.91157 0.86941 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.01 11.39 127.77 1.46 1.47 16 2 N -0.29 -3.22 3.74 -369.23 -1.38 -4.61 16 3 C -0.03 -0.33 11.54 83.49 0.96 0.63 16 4 C -0.04 -0.59 6.50 41.59 0.27 -0.32 16 5 C -0.01 -0.15 5.08 29.85 0.15 0.00 16 6 C -0.12 -1.85 4.02 29.85 0.12 -1.73 16 7 C 0.51 11.23 7.70 87.66 0.67 11.90 16 8 O -0.59 -17.29 15.39 -3.01 -0.05 -17.34 16 9 N -0.61 -12.42 2.96 -818.22 -2.42 -14.84 16 10 C 0.12 2.93 6.12 86.41 0.53 3.46 16 11 C -0.10 -3.01 4.87 30.42 0.15 -2.87 16 12 C -0.06 -1.60 0.55 -51.84 -0.03 -1.63 16 13 C -0.11 -3.08 4.91 31.56 0.16 -2.92 16 14 C 0.10 4.11 4.24 86.76 0.37 4.47 16 15 N -0.63 -30.42 3.31 -692.29 -2.29 -32.72 16 16 C -0.31 -18.15 10.56 84.03 0.89 -17.26 16 17 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 18 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 19 N -0.97 -63.93 13.70 21.65 0.30 -63.64 16 20 Si 1.11 55.05 24.53 68.60 1.68 56.74 16 21 H -0.32 -16.15 7.11 99.48 0.71 -15.44 16 22 H -0.28 -13.13 6.84 99.48 0.68 -12.45 16 23 H -0.25 -11.00 5.43 99.48 0.54 -10.46 16 24 C 0.14 5.31 6.16 86.63 0.53 5.84 16 25 C -0.11 -2.05 4.84 30.43 0.15 -1.91 16 26 C 0.11 1.59 6.08 86.43 0.53 2.12 16 27 N -0.30 -6.59 12.40 -48.60 -0.60 -7.19 16 28 N -0.12 -2.47 13.16 37.02 0.49 -1.98 16 29 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.13 -0.76 8.14 -2.38 -0.02 -0.77 16 31 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.10 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.11 1.55 7.93 -2.39 -0.02 1.53 16 36 H 0.11 1.29 7.70 -2.39 -0.02 1.28 16 37 H 0.08 2.13 6.99 -2.39 -0.02 2.11 16 38 H 0.08 1.80 6.56 -2.39 -0.02 1.78 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.89 7.82 -2.39 -0.02 1.87 16 41 H 0.09 2.20 6.18 -2.39 -0.01 2.18 16 42 H 0.09 2.17 7.98 -2.38 -0.02 2.15 16 43 H 0.03 1.24 6.79 -2.39 -0.02 1.22 16 44 H 0.02 0.90 3.81 -2.39 -0.01 0.89 16 45 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 46 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 47 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 48 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.11 1.11 5.91 -2.39 -0.01 1.10 16 51 H 0.09 1.13 7.62 -2.39 -0.02 1.11 16 Total: -1.00 -87.31 389.75 3.79 -83.52 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.70 Total: 5.44 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 7.37 Total: -3.37 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.91 Total: -124.98 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 1.68 Total: 56.74 kcal Total: -87.31 3.79 -83.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035261220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.350 kcal (2) G-P(sol) polarization free energy of solvation -87.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds