Wall clock time and date at job start Wed Apr 1 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28608 * 124.61863 * 2 1 4 4 C 1.31379 * 108.71565 * 179.72112 * 3 2 1 5 5 C 1.39678 * 105.90131 * 0.42292 * 4 3 2 6 6 C 1.50704 * 127.04798 * 179.84006 * 5 4 3 7 7 C 1.53000 * 109.46935 * 124.71462 * 6 5 4 8 8 C 1.50698 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00169 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00184 * 180.02562 * 8 7 6 11 11 C 1.48216 * 127.04930 * 359.97011 * 10 8 7 12 12 C 1.55033 * 103.33501 * 218.99805 * 11 10 8 13 13 C 1.54187 * 102.72737 * 323.01374 * 12 11 10 14 14 C 1.47608 * 127.02752 * 179.97438 * 10 8 7 15 15 C 1.52491 * 110.01105 * 140.68136 * 13 12 11 16 16 C 1.53122 * 109.60543 * 61.56711 * 15 13 12 17 17 C 1.53192 * 109.28983 * 60.50885 * 16 15 13 18 18 N 1.46921 * 108.89568 * 304.93680 * 17 16 15 19 19 C 1.36937 * 120.67910 * 234.03515 * 18 17 16 20 20 H 1.08002 * 120.00232 * 27.36885 * 19 18 17 21 21 C 1.38817 * 119.99974 * 207.36584 * 19 18 17 22 22 N 1.31611 * 119.99984 * 17.23981 * 21 19 18 23 23 Si 1.86795 * 119.99858 * 197.24164 * 21 19 18 24 24 H 1.48500 * 109.47468 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47268 * 119.99889 * 23 21 19 26 26 H 1.48499 * 109.47407 * 239.99846 * 23 21 19 27 27 C 1.47038 * 118.64128 * 54.01528 * 18 17 16 28 28 N 1.28596 * 124.62018 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46998 * 269.99997 * 1 2 3 30 30 H 1.08999 * 109.47405 * 30.00103 * 1 2 3 31 31 H 1.09004 * 109.47244 * 150.00129 * 1 2 3 32 32 H 1.07997 * 127.04428 * 180.27088 * 4 3 2 33 33 H 1.09004 * 109.47087 * 4.71733 * 6 5 4 34 34 H 1.09001 * 109.47164 * 244.71596 * 6 5 4 35 35 H 1.09000 * 109.47039 * 59.99705 * 7 6 5 36 36 H 1.09000 * 109.47081 * 299.99544 * 7 6 5 37 37 H 1.09008 * 110.62098 * 100.54276 * 11 10 8 38 38 H 1.08999 * 110.65885 * 337.47056 * 11 10 8 39 39 H 1.09001 * 110.76836 * 204.69973 * 12 11 10 40 40 H 1.09003 * 110.75955 * 81.31998 * 12 11 10 41 41 H 1.09003 * 109.97057 * 35.30017 * 14 10 8 42 42 H 1.08991 * 109.97906 * 274.06624 * 14 10 8 43 43 H 1.09009 * 109.44451 * 181.60731 * 15 13 12 44 44 H 1.09000 * 109.44709 * 301.54500 * 15 13 12 45 45 H 1.09003 * 109.50052 * 180.45143 * 16 15 13 46 46 H 1.08997 * 109.50160 * 300.52660 * 16 15 13 47 47 H 1.09003 * 109.56575 * 64.76127 * 17 16 15 48 48 H 1.09000 * 109.56951 * 184.98987 * 17 16 15 49 49 H 0.97002 * 120.00018 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.58252 * 187.42154 * 27 18 17 51 51 H 1.08995 * 109.58463 * 67.00581 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6984 0.0061 5 6 3.4591 -0.6984 0.0000 6 6 4.6619 -1.6063 0.0000 7 6 4.5701 -2.5744 1.1812 8 6 5.7732 -3.4819 1.1816 9 8 6.6204 -3.3662 0.3214 10 7 5.9073 -4.4229 2.1372 11 6 4.9739 -4.7002 3.2546 12 6 5.9205 -5.0068 4.4435 13 6 7.0741 -5.7764 3.7695 14 6 7.0141 -5.3882 2.2850 15 6 8.4078 -5.3542 4.3763 16 6 8.4243 -5.6959 5.8689 17 6 8.2508 -7.2079 6.0438 18 7 7.0256 -7.6295 5.3513 19 6 6.0559 -8.3339 6.0135 20 1 5.9392 -8.2194 7.0811 21 6 5.2226 -9.1950 5.3127 22 7 5.5589 -9.5992 4.1061 23 14 3.6241 -9.7800 6.0820 24 1 3.4795 -9.1858 7.4353 25 1 2.4821 -9.3588 5.2313 26 1 3.6402 -11.2608 6.1914 27 6 6.8618 -7.2793 3.9326 28 7 2.1955 -1.0583 0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 4.3210 1.3491 0.0118 33 1 5.5687 -1.0082 0.0900 34 1 4.6904 -2.1715 -0.9316 35 1 3.6633 -3.1725 1.0912 36 1 4.5417 -2.0091 2.1128 37 1 4.3494 -5.5643 3.0277 38 1 4.3592 -3.8258 3.4682 39 1 5.4208 -5.6307 5.1845 40 1 6.2840 -4.0840 4.8958 41 1 7.9540 -4.9262 1.9828 42 1 6.8214 -6.2717 1.6765 43 1 9.2184 -5.8823 3.8741 44 1 8.5407 -4.2799 4.2487 45 1 9.3752 -5.3861 6.3026 46 1 7.6087 -5.1750 6.3704 47 1 9.1090 -7.7257 5.6154 48 1 8.1731 -7.4461 7.1046 49 1 4.9768 -10.2012 3.6166 50 1 5.8566 -7.5441 3.6047 51 1 7.5971 -7.8190 3.3358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040393709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:58 Heat of formation + Delta-G solvation = 92.721303 kcal Electronic energy + Delta-G solvation = -31101.678249 eV Core-core repulsion = 27039.144918 eV Total energy + Delta-G solvation = -4062.533331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.77502 -40.09693 -38.45662 -35.77423 -35.02882 -33.21181 -33.08617 -31.93043 -31.11497 -29.98421 -29.12661 -28.09316 -26.01969 -25.36425 -24.16080 -22.78865 -22.56687 -22.19650 -20.95826 -20.42439 -18.97553 -18.04082 -17.56535 -17.08006 -16.79309 -16.48438 -15.96941 -15.38392 -15.06366 -14.84042 -14.46667 -14.12202 -13.96608 -13.89772 -13.58241 -13.35530 -13.25049 -13.01353 -12.97508 -12.64488 -12.48815 -12.29329 -12.02366 -11.86893 -11.79004 -11.53491 -11.14208 -11.11062 -10.99927 -10.97424 -10.94905 -10.69942 -10.45702 -10.38089 -10.15313 -10.04433 -9.81388 -9.74811 -9.52756 -9.38411 -9.30989 -8.51082 -8.38438 -6.70340 -5.82718 -3.24120 1.56544 2.07343 2.18129 2.82479 3.21032 3.33151 3.42313 3.43516 3.82622 4.42633 4.45663 4.63319 4.66014 4.70878 4.89533 4.97132 5.02223 5.05399 5.11784 5.21380 5.26795 5.37489 5.47412 5.55258 5.63010 5.65305 5.67564 5.74625 5.84807 5.87517 5.94977 6.05006 6.07049 6.08612 6.19209 6.25918 6.33917 6.40430 6.43662 6.46964 6.51954 6.65001 6.78331 6.85457 6.96162 7.00154 7.30604 7.59714 7.76640 7.81674 8.09032 8.35323 8.40452 9.17392 9.81119 10.38554 11.25689 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.002520 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.500666 B =11109.826573 C =12473.660508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.162 5.162 3 N -0.293 5.293 4 C -0.022 4.022 5 C 0.007 3.993 6 C -0.013 4.013 7 C -0.129 4.129 8 C 0.530 3.470 9 O -0.553 6.553 10 N -0.616 5.616 11 C 0.097 3.903 12 C -0.113 4.113 13 C -0.093 4.093 14 C 0.117 3.883 15 C -0.094 4.094 16 C -0.133 4.133 17 C 0.144 3.856 18 N -0.589 5.589 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.187 3.813 28 N -0.285 5.285 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.091 0.909 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 18.537 -5.649 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.134 5.134 4 C -0.204 4.204 5 C -0.156 4.156 6 C -0.052 4.052 7 C -0.170 4.170 8 C 0.319 3.681 9 O -0.431 6.431 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.151 4.151 13 C -0.096 4.096 14 C -0.005 4.005 15 C -0.132 4.132 16 C -0.173 4.173 17 C 0.018 3.982 18 N -0.311 5.311 19 C -0.379 4.379 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.061 3.939 28 N -0.127 5.127 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.215 0.785 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.109 0.891 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.843 18.545 -6.268 20.738 hybrid contribution -0.049 -0.383 0.394 0.551 sum -6.892 18.162 -5.875 20.295 Atomic orbital electron populations 1.22109 0.70320 1.05755 1.04955 1.47913 1.08858 0.99391 1.50092 1.74035 1.04017 1.16166 1.19196 1.24687 0.94429 0.94740 1.06573 1.23249 0.92604 0.94211 1.05509 1.19636 0.91603 0.94820 0.99169 1.21563 0.97603 0.97533 1.00275 1.20167 0.87575 0.80098 0.80277 1.90683 1.44010 1.71212 1.37233 1.48943 1.24404 1.33716 1.27823 1.22710 0.92802 1.00717 0.86284 1.22671 0.95869 0.99739 0.96807 1.21844 0.95071 1.00874 0.91800 1.22095 0.89793 0.91496 0.97150 1.21375 0.96411 0.99006 0.96360 1.22029 1.00025 0.99589 0.95622 1.20907 0.89614 0.91336 0.96390 1.44037 1.16579 1.62742 1.07773 1.19200 1.08525 1.17523 0.92690 0.91628 1.25013 1.00350 0.96958 0.97253 1.70032 1.36518 1.35037 1.12951 0.86294 0.83995 0.78242 0.78692 1.20273 1.21569 1.21797 1.20756 1.02083 0.85913 0.85145 1.74027 1.03662 1.15513 1.19532 0.89264 0.88060 0.87926 0.78548 0.88770 0.89184 0.88452 0.89071 0.90467 0.90987 0.88280 0.92236 0.91223 0.91336 0.92617 0.93568 0.93280 0.92244 0.96579 0.92974 0.93666 0.89138 0.96287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 11.57 59.84 0.69 1.26 16 2 N -0.16 -1.66 4.35 -16.64 -0.07 -1.73 16 3 N -0.29 -3.20 12.05 30.67 0.37 -2.83 16 4 C -0.02 -0.22 12.15 -17.21 -0.21 -0.43 16 5 C 0.01 0.08 6.61 -82.25 -0.54 -0.47 16 6 C -0.01 -0.13 5.10 -27.88 -0.14 -0.28 16 7 C -0.13 -1.48 4.61 -27.88 -0.13 -1.61 16 8 C 0.53 7.98 7.89 -10.98 -0.09 7.89 16 9 O -0.55 -9.95 16.33 5.55 0.09 -9.85 16 10 N -0.62 -9.54 3.30 -169.80 -0.56 -10.10 16 11 C 0.10 1.40 6.95 -2.02 -0.01 1.39 16 12 C -0.11 -1.81 5.00 -25.04 -0.13 -1.94 16 13 C -0.09 -1.63 0.63 -154.04 -0.10 -1.73 16 14 C 0.12 1.99 6.28 -3.14 -0.02 1.97 16 15 C -0.09 -1.53 4.33 -26.93 -0.12 -1.64 16 16 C -0.13 -2.20 5.89 -26.57 -0.16 -2.35 16 17 C 0.14 2.87 6.50 -3.71 -0.02 2.85 16 18 N -0.59 -13.72 2.50 -172.56 -0.43 -14.15 16 19 C -0.25 -6.42 9.59 -15.06 -0.14 -6.57 16 20 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.02 11.18 55.49 0.62 -24.40 16 23 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.19 4.13 3.65 -3.93 -0.01 4.11 16 28 N -0.28 -3.34 12.04 33.72 0.41 -2.94 16 29 H 0.09 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 0.94 7.91 -51.93 -0.41 0.52 16 37 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.07 0.85 7.25 -51.93 -0.38 0.47 16 39 H 0.10 1.84 7.48 -51.93 -0.39 1.45 16 40 H 0.06 0.88 7.62 -51.93 -0.40 0.49 16 41 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 42 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 43 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -32.39 402.84 -8.25 -40.64 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.50 Total: 1.11 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.22 Total: 2.46 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.33 Total: -56.15 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.39 -8.25 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040393709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.361 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds