Wall clock time and date at job start Wed Apr 1 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28608 * 124.61863 * 2 1 4 4 C 1.31379 * 108.71565 * 179.72112 * 3 2 1 5 5 C 1.39678 * 105.90131 * 0.42292 * 4 3 2 6 6 C 1.50704 * 127.04798 * 179.84006 * 5 4 3 7 7 C 1.53000 * 109.46935 * 124.71462 * 6 5 4 8 8 C 1.50698 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00169 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00184 * 180.02562 * 8 7 6 11 11 C 1.48216 * 127.04930 * 359.97011 * 10 8 7 12 12 C 1.55033 * 103.33501 * 218.99805 * 11 10 8 13 13 C 1.54187 * 102.72737 * 323.01374 * 12 11 10 14 14 C 1.47608 * 127.02752 * 179.97438 * 10 8 7 15 15 C 1.52491 * 110.01105 * 140.68136 * 13 12 11 16 16 C 1.53122 * 109.60543 * 61.56711 * 15 13 12 17 17 C 1.53192 * 109.28983 * 60.50885 * 16 15 13 18 18 N 1.46921 * 108.89568 * 304.93680 * 17 16 15 19 19 C 1.36937 * 120.67910 * 234.03515 * 18 17 16 20 20 H 1.08002 * 120.00232 * 27.36885 * 19 18 17 21 21 C 1.38817 * 119.99974 * 207.36584 * 19 18 17 22 22 N 1.31611 * 119.99984 * 17.23981 * 21 19 18 23 23 Si 1.86795 * 119.99858 * 197.24164 * 21 19 18 24 24 H 1.48500 * 109.47468 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47268 * 119.99889 * 23 21 19 26 26 H 1.48499 * 109.47407 * 239.99846 * 23 21 19 27 27 C 1.47038 * 118.64128 * 54.01528 * 18 17 16 28 28 N 1.28596 * 124.62018 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46998 * 269.99997 * 1 2 3 30 30 H 1.08999 * 109.47405 * 30.00103 * 1 2 3 31 31 H 1.09004 * 109.47244 * 150.00129 * 1 2 3 32 32 H 1.07997 * 127.04428 * 180.27088 * 4 3 2 33 33 H 1.09004 * 109.47087 * 4.71733 * 6 5 4 34 34 H 1.09001 * 109.47164 * 244.71596 * 6 5 4 35 35 H 1.09000 * 109.47039 * 59.99705 * 7 6 5 36 36 H 1.09000 * 109.47081 * 299.99544 * 7 6 5 37 37 H 1.09008 * 110.62098 * 100.54276 * 11 10 8 38 38 H 1.08999 * 110.65885 * 337.47056 * 11 10 8 39 39 H 1.09001 * 110.76836 * 204.69973 * 12 11 10 40 40 H 1.09003 * 110.75955 * 81.31998 * 12 11 10 41 41 H 1.09003 * 109.97057 * 35.30017 * 14 10 8 42 42 H 1.08991 * 109.97906 * 274.06624 * 14 10 8 43 43 H 1.09009 * 109.44451 * 181.60731 * 15 13 12 44 44 H 1.09000 * 109.44709 * 301.54500 * 15 13 12 45 45 H 1.09003 * 109.50052 * 180.45143 * 16 15 13 46 46 H 1.08997 * 109.50160 * 300.52660 * 16 15 13 47 47 H 1.09003 * 109.56575 * 64.76127 * 17 16 15 48 48 H 1.09000 * 109.56951 * 184.98987 * 17 16 15 49 49 H 0.97002 * 120.00018 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.58252 * 187.42154 * 27 18 17 51 51 H 1.08995 * 109.58463 * 67.00581 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6984 0.0061 5 6 3.4591 -0.6984 0.0000 6 6 4.6619 -1.6063 0.0000 7 6 4.5701 -2.5744 1.1812 8 6 5.7732 -3.4819 1.1816 9 8 6.6204 -3.3662 0.3214 10 7 5.9073 -4.4229 2.1372 11 6 4.9739 -4.7002 3.2546 12 6 5.9205 -5.0068 4.4435 13 6 7.0741 -5.7764 3.7695 14 6 7.0141 -5.3882 2.2850 15 6 8.4078 -5.3542 4.3763 16 6 8.4243 -5.6959 5.8689 17 6 8.2508 -7.2079 6.0438 18 7 7.0256 -7.6295 5.3513 19 6 6.0559 -8.3339 6.0135 20 1 5.9392 -8.2194 7.0811 21 6 5.2226 -9.1950 5.3127 22 7 5.5589 -9.5992 4.1061 23 14 3.6241 -9.7800 6.0820 24 1 3.4795 -9.1858 7.4353 25 1 2.4821 -9.3588 5.2313 26 1 3.6402 -11.2608 6.1914 27 6 6.8618 -7.2793 3.9326 28 7 2.1955 -1.0583 0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 4.3210 1.3491 0.0118 33 1 5.5687 -1.0082 0.0900 34 1 4.6904 -2.1715 -0.9316 35 1 3.6633 -3.1725 1.0912 36 1 4.5417 -2.0091 2.1128 37 1 4.3494 -5.5643 3.0277 38 1 4.3592 -3.8258 3.4682 39 1 5.4208 -5.6307 5.1845 40 1 6.2840 -4.0840 4.8958 41 1 7.9540 -4.9262 1.9828 42 1 6.8214 -6.2717 1.6765 43 1 9.2184 -5.8823 3.8741 44 1 8.5407 -4.2799 4.2487 45 1 9.3752 -5.3861 6.3026 46 1 7.6087 -5.1750 6.3704 47 1 9.1090 -7.7257 5.6154 48 1 8.1731 -7.4461 7.1046 49 1 4.9768 -10.2012 3.6166 50 1 5.8566 -7.5441 3.6047 51 1 7.5971 -7.8190 3.3358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040393709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:57 Heat of formation + Delta-G solvation = 73.228875 kcal Electronic energy + Delta-G solvation = -31102.523504 eV Core-core repulsion = 27039.144918 eV Total energy + Delta-G solvation = -4063.378587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.50742 -41.42534 -39.82651 -37.26321 -35.83961 -34.86680 -33.88784 -33.01772 -32.37030 -31.68813 -30.44701 -28.86421 -27.32185 -27.07816 -25.24563 -24.08152 -23.83129 -23.27847 -22.21117 -21.51882 -20.19247 -19.54272 -18.53950 -18.23173 -17.83683 -17.73411 -17.21912 -16.67974 -16.50972 -15.80791 -15.72188 -15.58671 -15.36146 -15.05544 -14.80832 -14.52029 -14.43810 -14.09452 -13.92442 -13.84345 -13.60946 -13.52654 -13.31718 -13.12990 -12.92719 -12.86165 -12.68192 -12.62344 -12.47629 -12.35820 -12.07541 -11.95811 -11.80264 -11.78098 -11.62772 -11.31235 -11.24617 -11.17674 -10.98978 -10.84371 -10.49460 -10.05723 -9.69028 -8.62898 -7.82839 -5.26622 0.81753 1.42045 1.47672 1.51202 1.52580 1.60330 1.63167 2.01833 2.54499 3.14512 3.30646 3.43466 3.65603 3.77161 3.82545 3.88670 3.99956 4.15645 4.18562 4.30495 4.31440 4.34638 4.36780 4.39564 4.44187 4.52748 4.57814 4.61218 4.65642 4.70172 4.78606 4.82701 4.84592 4.96651 4.99045 5.04729 5.09701 5.16287 5.19346 5.21902 5.31389 5.32688 5.38448 5.44897 5.53821 5.65717 5.71268 5.78309 5.79355 6.43117 6.60236 7.13913 7.19333 7.34882 7.91019 8.43674 9.23423 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.002520 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.500666 B =11109.826573 C =12473.660508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.310 5.310 4 C -0.024 4.024 5 C -0.004 4.004 6 C -0.005 4.005 7 C -0.117 4.117 8 C 0.529 3.471 9 O -0.584 6.584 10 N -0.616 5.616 11 C 0.103 3.897 12 C -0.105 4.105 13 C -0.085 4.085 14 C 0.122 3.878 15 C -0.091 4.091 16 C -0.120 4.120 17 C 0.137 3.863 18 N -0.604 5.604 19 C -0.250 4.250 20 H 0.068 0.932 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.959 3.041 24 H -0.265 1.265 25 H -0.290 1.290 26 H -0.299 1.299 27 C 0.201 3.799 28 N -0.306 5.306 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.007 0.993 48 H 0.053 0.947 49 H 0.247 0.753 50 H 0.059 0.941 51 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 21.411 -4.517 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.065 5.065 3 N -0.151 5.151 4 C -0.205 4.205 5 C -0.166 4.166 6 C -0.045 4.045 7 C -0.157 4.157 8 C 0.320 3.680 9 O -0.465 6.465 10 N -0.349 5.349 11 C -0.019 4.019 12 C -0.143 4.143 13 C -0.087 4.087 14 C -0.002 4.002 15 C -0.129 4.129 16 C -0.159 4.159 17 C 0.012 3.988 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.582 5.582 23 Si 0.788 3.212 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.227 1.227 27 C 0.075 3.925 28 N -0.150 5.150 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.241 0.759 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.025 0.975 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.077 0.923 51 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -7.510 21.446 -5.110 23.290 hybrid contribution 0.189 -1.316 0.030 1.330 sum -7.321 20.129 -5.080 22.014 Atomic orbital electron populations 1.22511 0.68180 1.07183 1.06360 1.48387 1.10107 0.98817 1.49224 1.74027 1.04592 1.16674 1.19852 1.25168 0.94997 0.94716 1.05618 1.23265 0.92378 0.94716 1.06199 1.19546 0.92171 0.94628 0.98157 1.21527 0.95471 0.97015 1.01696 1.20821 0.88073 0.79852 0.79235 1.90670 1.45453 1.72062 1.38279 1.48999 1.24025 1.33473 1.28404 1.22695 0.92396 1.01709 0.85109 1.22564 0.95185 0.99851 0.96699 1.21608 0.96986 0.97528 0.92597 1.21889 0.90639 0.91264 0.96384 1.21369 0.95075 1.00367 0.96054 1.21893 1.01803 0.96353 0.95865 1.21083 0.87802 0.93984 0.95943 1.44276 1.17498 1.62773 1.08114 1.19480 1.08767 1.16864 0.92903 0.91464 1.25686 1.03176 0.97703 0.97781 1.70194 1.37455 1.36142 1.14382 0.85332 0.80473 0.77023 0.78399 1.18890 1.21663 1.22690 1.20451 0.99066 0.88854 0.84171 1.73982 1.04303 1.16515 1.20169 0.87845 0.86341 0.86900 0.75893 0.87719 0.90498 0.88217 0.86944 0.92153 0.87329 0.90715 0.89827 0.90999 0.93665 0.93161 0.91068 0.90285 0.91757 0.97524 0.92845 0.94362 0.92305 0.99791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.57 127.77 1.48 2.30 16 2 N -0.16 -3.06 4.35 -206.55 -0.90 -3.96 16 3 N -0.31 -6.19 12.05 -56.87 -0.69 -6.87 16 4 C -0.02 -0.42 12.15 85.11 1.03 0.62 16 5 C 0.00 -0.07 6.61 42.98 0.28 0.21 16 6 C -0.01 -0.10 5.10 29.85 0.15 0.05 16 7 C -0.12 -2.41 4.61 29.85 0.14 -2.27 16 8 C 0.53 15.18 7.89 87.66 0.69 15.87 16 9 O -0.58 -20.56 16.33 -3.05 -0.05 -20.61 16 10 N -0.62 -18.39 3.30 -809.50 -2.67 -21.06 16 11 C 0.10 2.80 6.95 86.75 0.60 3.41 16 12 C -0.10 -3.19 5.00 31.69 0.16 -3.04 16 13 C -0.08 -2.94 0.63 -51.87 -0.03 -2.97 16 14 C 0.12 4.15 6.28 86.36 0.54 4.69 16 15 C -0.09 -2.78 4.33 30.47 0.13 -2.65 16 16 C -0.12 -3.66 5.89 30.70 0.18 -3.48 16 17 C 0.14 5.40 6.50 86.36 0.56 5.96 16 18 N -0.60 -28.59 2.50 -699.85 -1.75 -30.34 16 19 C -0.25 -13.01 9.59 84.03 0.81 -12.20 16 20 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 21 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 22 N -0.94 -54.06 11.18 21.65 0.24 -53.81 16 23 Si 0.96 43.35 29.59 68.60 2.03 45.38 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 C 0.20 9.19 3.65 86.16 0.31 9.51 16 28 N -0.31 -6.71 12.04 -47.24 -0.57 -7.28 16 29 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.08 1.70 8.10 -2.39 -0.02 1.69 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.11 1.89 7.91 -2.39 -0.02 1.87 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.11 2.18 7.25 -2.39 -0.02 2.17 16 39 H 0.07 2.70 7.48 -2.39 -0.02 2.68 16 40 H 0.08 2.17 7.62 -2.39 -0.02 2.16 16 41 H 0.07 2.41 7.60 -2.39 -0.02 2.40 16 42 H 0.04 1.73 7.67 -2.39 -0.02 1.71 16 43 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 1.93 7.13 -2.39 -0.02 1.91 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.06 3.06 6.06 -2.39 -0.01 3.05 16 51 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: -1.00 -71.86 402.84 4.02 -67.84 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.91 Total: 16.87 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 7.46 Total: 13.85 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -6.34 Total: -123.32 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.86 4.02 -67.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040393709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.067 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds