Wall clock time and date at job start Wed Apr 1 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28604 * 124.62370 * 2 1 4 4 C 1.31373 * 108.72082 * 180.02562 * 3 2 1 5 5 C 1.39676 * 105.90268 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.05206 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47338 * 124.99611 * 6 5 4 8 8 C 1.50707 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21273 * 119.99945 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99522 * 179.97438 * 8 7 6 11 11 C 1.48183 * 127.80710 * 0.02562 * 10 8 7 12 12 C 1.54505 * 104.63255 * 140.66455 * 11 10 8 13 13 C 1.53845 * 104.79484 * 23.80228 * 12 11 10 14 14 C 1.48266 * 127.79588 * 179.97438 * 10 8 7 15 15 C 1.52478 * 110.21755 * 240.96296 * 13 12 11 16 16 C 1.53120 * 109.65942 * 178.08344 * 15 13 12 17 17 C 1.52758 * 109.35994 * 60.36440 * 16 15 13 18 18 N 1.46927 * 109.08500 * 305.08386 * 17 16 15 19 19 C 1.36940 * 120.67666 * 234.05329 * 18 17 16 20 20 H 1.08002 * 119.99347 * 27.09728 * 19 18 17 21 21 C 1.38810 * 120.00268 * 207.36932 * 19 18 17 22 22 N 1.31623 * 119.99599 * 16.85253 * 21 19 18 23 23 Si 1.86802 * 120.00135 * 196.85357 * 21 19 18 24 24 H 1.48497 * 109.46685 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46862 * 120.00024 * 23 21 19 26 26 H 1.48497 * 109.46951 * 240.00183 * 23 21 19 27 27 C 1.47033 * 118.64945 * 53.77884 * 18 17 16 28 28 N 1.28600 * 124.61889 * 180.32160 * 2 1 3 29 29 H 1.09002 * 109.47230 * 89.97747 * 1 2 3 30 30 H 1.08999 * 109.47665 * 209.98005 * 1 2 3 31 31 H 1.09007 * 109.47425 * 329.98549 * 1 2 3 32 32 H 1.08002 * 127.04978 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46816 * 4.99228 * 6 5 4 34 34 H 1.09003 * 109.47190 * 244.99698 * 6 5 4 35 35 H 1.08998 * 109.47005 * 59.99863 * 7 6 5 36 36 H 1.09003 * 109.46977 * 299.99621 * 7 6 5 37 37 H 1.09004 * 110.40565 * 21.88274 * 11 10 8 38 38 H 1.08997 * 110.40995 * 259.45211 * 11 10 8 39 39 H 1.09001 * 110.37593 * 264.97529 * 12 11 10 40 40 H 1.08996 * 110.47082 * 142.67437 * 12 11 10 41 41 H 1.08998 * 110.42203 * 100.43468 * 14 10 8 42 42 H 1.08995 * 110.42629 * 337.95365 * 14 10 8 43 43 H 1.08996 * 109.44127 * 298.14598 * 15 13 12 44 44 H 1.09004 * 109.44101 * 58.02848 * 15 13 12 45 45 H 1.08999 * 109.49867 * 180.42939 * 16 15 13 46 46 H 1.08998 * 109.49855 * 300.54813 * 16 15 13 47 47 H 1.08996 * 109.49454 * 185.17573 * 17 16 15 48 48 H 1.09009 * 109.41881 * 64.94236 * 17 16 15 49 49 H 0.96999 * 119.99710 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.56595 * 67.33090 * 27 18 17 51 51 H 1.08990 * 109.57361 * 187.70671 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 -0.0006 5 6 3.4591 -0.6984 -0.0003 6 6 4.6618 -1.6065 -0.0013 7 6 4.5715 -2.5738 1.1806 8 6 5.7739 -3.4823 1.1792 9 8 6.6200 -3.3670 0.3180 10 7 5.9095 -4.4221 2.1356 11 6 4.9899 -4.7123 3.2608 12 6 4.9832 -6.2533 3.3719 13 6 6.3139 -6.6984 2.7412 14 6 7.0120 -5.3999 2.2990 15 6 6.0519 -7.5925 1.5341 16 6 7.3825 -7.9889 0.8882 17 6 8.2301 -8.7536 1.9032 18 7 8.3787 -7.9383 3.1164 19 6 9.6202 -7.6551 3.6202 20 1 10.4761 -7.6262 2.9621 21 6 9.7795 -7.4109 4.9773 22 7 8.8376 -7.7669 5.8249 23 14 11.3305 -6.5770 5.6005 24 1 12.2274 -6.2802 4.4548 25 1 10.9697 -5.3113 6.2883 26 1 12.0275 -7.4772 6.5539 27 6 7.1676 -7.4275 3.7753 28 7 2.1955 -1.0583 -0.0059 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3634 0.8899 0.5141 32 1 4.3211 1.3490 -0.0011 33 1 5.5687 -1.0083 0.0872 34 1 4.6891 -2.1722 -0.9326 35 1 3.6646 -3.1719 1.0921 36 1 4.5442 -2.0080 2.1119 37 1 3.9887 -4.3430 3.0384 38 1 5.3643 -4.2665 4.1823 39 1 4.1423 -6.6701 2.8175 40 1 4.9373 -6.5599 4.4169 41 1 7.7089 -5.0626 3.0661 42 1 7.5305 -5.5502 1.3521 43 1 5.5229 -8.4897 1.8552 44 1 5.4430 -7.0531 0.8086 45 1 7.1918 -8.6215 0.0214 46 1 7.9162 -7.0918 0.5746 47 1 9.2125 -8.9568 1.4771 48 1 7.7368 -9.6932 2.1527 49 1 8.9487 -7.5959 6.7733 50 1 6.6018 -8.2594 4.1949 51 1 7.4481 -6.7365 4.5700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040393710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:02 Heat of formation + Delta-G solvation = 94.984102 kcal Electronic energy + Delta-G solvation = -31205.019643 eV Core-core repulsion = 27142.584434 eV Total energy + Delta-G solvation = -4062.435209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.79266 -40.08580 -38.38415 -35.78169 -35.04098 -33.20633 -33.02673 -31.93672 -31.32500 -29.99248 -28.80364 -28.14243 -26.14662 -25.30776 -24.14418 -23.04020 -22.58603 -22.14887 -20.81469 -20.37219 -18.86374 -18.03398 -17.62239 -17.10794 -16.83742 -16.70484 -15.81501 -15.23717 -14.99180 -14.90868 -14.54920 -14.12798 -13.94818 -13.72020 -13.59548 -13.49571 -13.20800 -13.00706 -12.94121 -12.75715 -12.44690 -12.39170 -12.03389 -11.86063 -11.76877 -11.45396 -11.14765 -11.04164 -11.02071 -10.98730 -10.80871 -10.69775 -10.47191 -10.36435 -10.25306 -10.10602 -9.74505 -9.65297 -9.47504 -9.38486 -9.31499 -8.49203 -8.35313 -6.66582 -5.79681 -3.20336 1.54364 2.05016 2.16910 2.86523 3.24102 3.37206 3.45939 3.48647 3.80881 4.41488 4.49869 4.59609 4.64734 4.69518 4.85908 4.95798 4.98961 5.02671 5.09465 5.19756 5.24906 5.40436 5.46474 5.53861 5.59769 5.61678 5.67485 5.71789 5.83216 5.85704 5.94007 6.07531 6.12724 6.15099 6.18186 6.24847 6.31670 6.39671 6.41791 6.45360 6.54666 6.71175 6.79674 6.85745 6.96148 7.05821 7.30915 7.60083 7.80859 7.88120 8.07055 8.40013 8.43931 9.21220 9.84491 10.41521 11.29063 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002334 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.910570 B =11996.206262 C =12495.006643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.163 5.163 3 N -0.293 5.293 4 C -0.021 4.021 5 C 0.008 3.992 6 C -0.013 4.013 7 C -0.129 4.129 8 C 0.531 3.469 9 O -0.548 6.548 10 N -0.622 5.622 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.094 4.094 14 C 0.126 3.874 15 C -0.091 4.091 16 C -0.139 4.139 17 C 0.145 3.855 18 N -0.592 5.592 19 C -0.246 4.246 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.188 3.812 28 N -0.286 5.286 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.016 0.984 49 H 0.252 0.748 50 H 0.022 0.978 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.452 12.556 -8.602 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.134 5.134 4 C -0.204 4.204 5 C -0.155 4.155 6 C -0.053 4.053 7 C -0.169 4.169 8 C 0.320 3.680 9 O -0.426 6.426 10 N -0.356 5.356 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.097 4.097 14 C 0.005 3.995 15 C -0.129 4.129 16 C -0.178 4.178 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.376 4.376 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.062 3.938 28 N -0.129 5.129 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.215 0.785 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.040 0.960 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.408 12.724 -8.970 24.108 hybrid contribution 1.485 0.428 0.546 1.640 sum -16.923 13.151 -8.424 23.028 Atomic orbital electron populations 1.22098 0.70364 1.05796 1.04847 1.47905 1.08829 0.99407 1.50167 1.74034 1.04029 1.16147 1.19193 1.24702 0.94428 0.94772 1.06467 1.23254 0.92589 0.94232 1.05387 1.19643 0.91639 0.94865 0.99167 1.21562 0.97590 0.97481 1.00292 1.20115 0.87508 0.80153 0.80267 1.90697 1.44039 1.70683 1.37212 1.49210 1.25186 1.34160 1.27006 1.22426 0.93438 0.96732 0.89570 1.22543 0.97905 0.93778 1.02116 1.21849 0.94861 0.95189 0.97765 1.22443 0.88484 0.86194 1.02347 1.21324 0.97033 0.98395 0.96163 1.22037 0.96829 1.00704 0.98226 1.20821 0.97134 0.92336 0.87831 1.44060 1.02707 1.57084 1.27534 1.19232 0.85995 1.41792 0.90563 0.91623 1.24996 0.97610 1.01122 0.95945 1.70032 1.34339 1.48806 1.01714 0.86278 0.83085 0.79153 0.78665 1.20225 1.21593 1.21793 1.20786 0.85397 0.95944 0.91693 1.74010 1.03669 1.15531 1.19685 0.89388 0.87925 0.88024 0.78513 0.88695 0.89189 0.88648 0.89136 0.91021 0.90989 0.91568 0.89980 0.90579 0.89974 0.92623 0.93738 0.93187 0.92064 0.92944 0.96586 0.93759 0.96038 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.51 11.57 59.84 0.69 1.20 16 2 N -0.16 -1.60 4.35 -16.64 -0.07 -1.67 16 3 N -0.29 -3.14 12.05 30.67 0.37 -2.77 16 4 C -0.02 -0.21 12.15 -17.21 -0.21 -0.42 16 5 C 0.01 0.09 6.61 -82.25 -0.54 -0.46 16 6 C -0.01 -0.14 5.10 -27.89 -0.14 -0.28 16 7 C -0.13 -1.44 4.66 -27.88 -0.13 -1.57 16 8 C 0.53 8.14 7.91 -10.98 -0.09 8.06 16 9 O -0.55 -10.32 16.25 5.56 0.09 -10.23 16 10 N -0.62 -9.70 3.32 -169.40 -0.56 -10.26 16 11 C 0.10 1.30 6.92 -2.33 -0.02 1.29 16 12 C -0.12 -1.77 6.29 -25.50 -0.16 -1.93 16 13 C -0.09 -1.66 0.68 -154.05 -0.11 -1.76 16 14 C 0.13 2.35 5.79 -2.59 -0.02 2.33 16 15 C -0.09 -1.54 4.48 -26.94 -0.12 -1.66 16 16 C -0.14 -2.47 5.87 -26.79 -0.16 -2.63 16 17 C 0.15 3.02 6.47 -3.93 -0.03 2.99 16 18 N -0.59 -14.25 2.83 -172.84 -0.49 -14.74 16 19 C -0.25 -6.58 9.59 -15.06 -0.14 -6.72 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -25.31 11.17 55.49 0.62 -24.69 16 23 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.19 4.17 3.66 -3.94 -0.01 4.16 16 28 N -0.29 -3.23 12.05 33.71 0.41 -2.83 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.10 1.02 7.95 -51.93 -0.41 0.60 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 40 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 41 H 0.08 1.59 7.72 -51.93 -0.40 1.19 16 42 H 0.08 1.68 5.63 -51.93 -0.29 1.38 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.17 6.21 -51.93 -0.32 0.84 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 2.24 5.90 -51.93 -0.31 1.94 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -33.34 401.53 -8.25 -41.58 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.37 Total: 0.57 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.26 Total: 2.54 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.27 Total: -56.96 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.34 -8.25 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040393710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.568 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds