Wall clock time and date at job start Wed Apr 1 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35312 * 125.87384 * 2 1 4 4 C 1.35348 * 106.17790 * 180.18842 * 3 2 1 5 5 C 1.50704 * 126.75088 * 179.85398 * 4 3 2 6 6 C 1.53000 * 109.46935 * 124.71477 * 5 4 3 7 7 C 1.50698 * 109.46990 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00169 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.48216 * 127.04930 * 359.97011 * 9 7 6 11 11 C 1.55033 * 103.33501 * 218.99805 * 10 9 7 12 12 C 1.54187 * 102.72737 * 323.01374 * 11 10 9 13 13 C 1.47608 * 127.02752 * 179.97438 * 9 7 6 14 14 C 1.52491 * 110.01105 * 140.68136 * 12 11 10 15 15 C 1.53122 * 109.60543 * 61.56711 * 14 12 11 16 16 C 1.53192 * 109.28983 * 60.50885 * 15 14 12 17 17 N 1.46921 * 108.89568 * 304.93680 * 16 15 14 18 18 C 1.36937 * 120.67910 * 234.03515 * 17 16 15 19 19 H 1.08002 * 120.00232 * 27.36885 * 18 17 16 20 20 C 1.38817 * 119.99974 * 207.36584 * 18 17 16 21 21 N 1.31611 * 119.99984 * 17.23981 * 20 18 17 22 22 Si 1.86795 * 119.99858 * 197.24164 * 20 18 17 23 23 H 1.48500 * 109.47468 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47268 * 119.99889 * 22 20 18 25 25 H 1.48499 * 109.47407 * 239.99846 * 22 20 18 26 26 C 1.47038 * 118.64128 * 54.01528 * 17 16 15 27 27 N 1.33765 * 106.49447 * 359.59733 * 4 3 2 28 28 N 1.28633 * 108.89013 * 0.25922 * 27 4 3 29 29 H 1.09001 * 109.46545 * 270.29373 * 1 2 3 30 30 H 1.09002 * 109.46789 * 30.28613 * 1 2 3 31 31 H 1.08990 * 109.47168 * 150.28981 * 1 2 3 32 32 H 1.08008 * 126.91192 * 0.04783 * 3 2 1 33 33 H 1.09004 * 109.47087 * 4.71748 * 5 4 3 34 34 H 1.09001 * 109.47164 * 244.71611 * 5 4 3 35 35 H 1.09000 * 109.47039 * 59.99705 * 6 5 4 36 36 H 1.09000 * 109.47081 * 299.99544 * 6 5 4 37 37 H 1.09008 * 110.62098 * 100.54276 * 10 9 7 38 38 H 1.08999 * 110.65885 * 337.47056 * 10 9 7 39 39 H 1.09001 * 110.76836 * 204.69973 * 11 10 9 40 40 H 1.09003 * 110.75955 * 81.31998 * 11 10 9 41 41 H 1.09003 * 109.97057 * 35.30017 * 13 9 7 42 42 H 1.08991 * 109.97906 * 274.06624 * 13 9 7 43 43 H 1.09009 * 109.44451 * 181.60731 * 14 12 11 44 44 H 1.09000 * 109.44709 * 301.54500 * 14 12 11 45 45 H 1.09003 * 109.50052 * 180.45143 * 15 14 12 46 46 H 1.08997 * 109.50160 * 300.52660 * 15 14 12 47 47 H 1.09003 * 109.56575 * 64.76127 * 16 15 14 48 48 H 1.09000 * 109.56951 * 184.98987 * 16 15 14 49 49 H 0.97002 * 120.00018 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58252 * 187.42154 * 26 17 16 51 51 H 1.08995 * 109.58463 * 67.00581 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0964 0.0000 4 6 3.5322 0.6403 -0.0043 5 6 4.7882 1.4733 -0.0091 6 6 5.6714 1.0711 1.1737 7 6 6.9269 1.9044 1.1693 8 8 7.0987 2.7377 0.3049 9 7 7.8595 1.7231 2.1253 10 6 7.8117 0.7562 3.2476 11 6 8.4158 1.5531 4.4322 12 6 9.5246 2.3822 3.7535 13 6 9.1378 2.4472 2.2689 14 6 9.5696 3.7835 4.3534 15 6 9.8981 3.6930 5.8462 16 6 11.2668 3.0281 6.0238 17 7 11.2572 1.7289 5.3377 18 6 11.5998 0.5836 6.0055 19 1 11.4537 0.5169 7.0735 20 6 12.1350 -0.4919 5.3097 21 7 12.6273 -0.3149 4.1020 22 14 12.1563 -2.1900 6.0874 23 1 11.5485 -2.1224 7.4407 24 1 11.3793 -3.1316 5.2418 25 1 13.5584 -2.6662 6.1984 26 6 10.8717 1.6837 3.9195 27 7 3.4576 -0.6953 0.0024 28 7 2.2192 -1.0431 0.0047 29 1 -0.3632 0.0053 1.0277 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3633 -0.8925 -0.5093 32 1 1.9383 2.1281 0.0007 33 1 4.5252 2.5277 0.0759 34 1 5.3303 1.3079 -0.9401 35 1 5.9343 0.0167 1.0888 36 1 5.1292 1.2366 2.1048 37 1 8.4192 -0.1210 3.0247 38 1 6.7829 0.4678 3.4632 39 1 8.8388 0.8782 5.1764 40 1 7.6665 2.2047 4.8817 41 1 9.0139 3.4857 1.9616 42 1 9.9068 1.9690 1.6624 43 1 10.3367 4.3702 3.8478 44 1 8.6003 4.2650 4.2239 45 1 9.9220 4.6949 6.2750 46 1 9.1363 3.0991 6.3512 47 1 12.0401 3.6634 5.5918 48 1 11.4662 2.8809 7.0852 49 1 13.0016 -1.0663 3.6159 50 1 10.7875 0.6460 3.5967 51 1 11.6247 2.1950 3.3197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040555084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:28 Heat of formation + Delta-G solvation = 82.888639 kcal Electronic energy + Delta-G solvation = -31020.732678 eV Core-core repulsion = 26957.772970 eV Total energy + Delta-G solvation = -4062.959708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.51401 -40.06793 -38.43017 -35.76681 -35.36926 -33.65488 -33.09583 -31.37441 -30.31246 -29.94200 -29.08178 -28.27831 -26.25231 -25.34405 -24.23172 -22.76387 -22.37193 -22.17772 -21.21332 -20.47406 -18.94537 -17.99760 -17.56222 -16.92384 -16.74677 -16.44694 -15.98272 -15.36060 -15.09468 -14.90062 -14.49134 -14.03410 -13.97589 -13.92654 -13.73712 -13.45577 -13.18198 -13.04783 -12.95501 -12.51863 -12.42248 -12.29146 -12.04331 -11.93079 -11.76645 -11.53301 -11.42258 -11.09133 -10.95942 -10.92629 -10.87592 -10.67458 -10.36128 -10.34055 -10.13209 -10.02185 -9.79309 -9.72481 -9.52537 -9.36464 -9.33474 -8.48580 -8.35428 -6.68138 -5.80305 -3.21796 1.28998 2.03118 2.27438 2.85748 3.24646 3.36235 3.45183 3.46280 3.96994 4.20970 4.46973 4.48092 4.49484 4.71701 4.75983 4.82695 5.01008 5.08452 5.12482 5.19079 5.26828 5.38043 5.42765 5.51888 5.57368 5.67695 5.69258 5.77396 5.82282 5.89778 5.93863 6.05730 6.06902 6.09995 6.21748 6.23274 6.27821 6.35879 6.42746 6.48841 6.53654 6.66590 6.79978 6.87429 6.98208 7.01611 7.32798 7.62214 7.79030 7.84801 8.24907 8.38426 8.42834 9.19753 9.83453 10.40796 11.28101 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.002397 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.302183 B =11679.857702 C =12760.783306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.050 4.050 4 C -0.014 4.014 5 C -0.015 4.015 6 C -0.129 4.129 7 C 0.530 3.470 8 O -0.554 6.554 9 N -0.616 5.616 10 C 0.097 3.903 11 C -0.113 4.113 12 C -0.093 4.093 13 C 0.117 3.883 14 C -0.093 4.093 15 C -0.133 4.133 16 C 0.144 3.856 17 N -0.589 5.589 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.187 3.813 27 N -0.262 5.262 28 N -0.087 5.087 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.091 0.909 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.160 5.479 -5.656 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.091 5.091 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.055 4.055 6 C -0.169 4.169 7 C 0.319 3.681 8 O -0.433 6.433 9 N -0.349 5.349 10 C -0.025 4.025 11 C -0.151 4.151 12 C -0.096 4.096 13 C -0.005 4.005 14 C -0.131 4.131 15 C -0.173 4.173 16 C 0.018 3.982 17 N -0.311 5.311 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.061 3.939 27 N -0.129 5.129 28 N -0.067 5.067 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.208 0.792 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -23.051 4.243 -6.267 24.262 hybrid contribution -0.203 0.228 0.381 0.489 sum -23.254 4.472 -5.886 24.401 Atomic orbital electron populations 1.22257 0.72797 1.05880 1.05013 1.47248 1.09382 1.05019 1.47469 1.23417 0.90863 0.94728 1.11039 1.22082 0.95389 0.91476 1.06294 1.19612 0.89277 0.97311 0.99303 1.21541 0.93845 1.01461 1.00085 1.20189 0.84000 0.83624 0.80272 1.90675 1.79148 1.36477 1.37025 1.48942 1.19883 1.38431 1.27615 1.22718 1.01038 0.92668 0.86119 1.22671 0.96767 0.98772 0.96871 1.21845 0.99624 0.96325 0.91809 1.22092 0.84384 0.96900 0.97163 1.21372 0.99861 0.95515 0.96379 1.22030 1.00352 0.99258 0.95625 1.20904 0.92968 0.87933 0.96437 1.44031 1.77434 1.01798 1.07839 1.19194 1.35263 0.90944 0.92598 0.91636 1.25012 0.98081 0.99221 0.97230 1.70029 1.41506 1.29968 1.13011 0.86299 0.77351 0.84870 0.78730 1.20292 1.21493 1.21806 1.20756 0.87828 1.00177 0.85127 1.75079 1.09290 1.12113 1.16425 1.78333 0.96504 1.12109 1.19745 0.89063 0.88319 0.88060 0.79194 0.89353 0.89182 0.88138 0.89191 0.90398 0.90919 0.88265 0.92287 0.91274 0.91326 0.92633 0.93615 0.93313 0.92242 0.96599 0.92979 0.93644 0.89116 0.96300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.22 11.39 59.85 0.68 0.91 16 2 N -0.30 -2.45 3.74 -68.06 -0.25 -2.70 16 3 C -0.05 -0.40 11.54 -17.05 -0.20 -0.60 16 4 C -0.01 -0.16 6.50 -82.78 -0.54 -0.70 16 5 C -0.02 -0.17 5.08 -27.88 -0.14 -0.31 16 6 C -0.13 -1.54 4.61 -27.88 -0.13 -1.67 16 7 C 0.53 8.19 7.89 -10.98 -0.09 8.10 16 8 O -0.55 -10.14 16.33 5.55 0.09 -10.04 16 9 N -0.62 -9.77 3.30 -169.80 -0.56 -10.34 16 10 C 0.10 1.44 6.95 -2.02 -0.01 1.43 16 11 C -0.11 -1.84 5.00 -25.04 -0.13 -1.97 16 12 C -0.09 -1.66 0.63 -154.04 -0.10 -1.75 16 13 C 0.12 2.03 6.28 -3.14 -0.02 2.01 16 14 C -0.09 -1.54 4.33 -26.93 -0.12 -1.65 16 15 C -0.13 -2.22 5.89 -26.57 -0.16 -2.37 16 16 C 0.14 2.89 6.50 -3.71 -0.02 2.87 16 17 N -0.59 -13.84 2.50 -172.56 -0.43 -14.27 16 18 C -0.25 -6.50 9.59 -15.06 -0.14 -6.65 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -25.28 11.18 55.49 0.62 -24.66 16 22 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.19 4.17 3.65 -3.93 -0.01 4.16 16 27 N -0.26 -3.56 12.40 33.29 0.41 -3.15 16 28 N -0.09 -1.07 13.17 60.35 0.79 -0.27 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.19 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 37 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 38 H 0.07 0.89 7.25 -51.93 -0.38 0.52 16 39 H 0.10 1.87 7.48 -51.93 -0.39 1.48 16 40 H 0.06 0.89 7.62 -51.93 -0.40 0.49 16 41 H 0.07 1.19 7.60 -51.93 -0.39 0.80 16 42 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 43 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.00 7.13 -51.93 -0.37 0.63 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.03 7.94 -51.93 -0.41 0.62 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -33.53 402.77 -8.00 -41.53 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.50 Total: 0.00 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.21 Total: 1.81 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.58 Total: -55.38 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.53 -8.00 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040555084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.419 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds