Wall clock time and date at job start Wed Apr 1 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46713 * 2 1 4 4 N 1.28518 * 124.44324 * 269.96934 * 3 2 1 5 5 C 1.31134 * 109.05533 * 179.73442 * 4 3 2 6 6 C 1.50699 * 127.10699 * 180.29408 * 5 4 3 7 7 C 1.40914 * 105.77945 * 0.43565 * 5 4 3 8 8 C 1.47799 * 127.23977 * 179.83187 * 7 5 4 9 9 O 1.21561 * 119.99907 * 359.72135 * 8 7 5 10 10 N 1.34777 * 120.00426 * 179.70813 * 8 7 5 11 11 C 1.48160 * 127.01860 * 359.97438 * 10 8 7 12 12 C 1.55048 * 103.30636 * 141.00701 * 11 10 8 13 13 C 1.54167 * 102.72557 * 37.01767 * 12 11 10 14 14 C 1.47608 * 127.02583 * 180.02562 * 10 8 7 15 15 C 1.52509 * 110.01546 * 97.40517 * 13 12 11 16 16 C 1.53120 * 109.61949 * 61.65998 * 15 13 12 17 17 C 1.53184 * 109.28634 * 60.52779 * 16 15 13 18 18 N 1.46932 * 108.87549 * 304.89819 * 17 16 15 19 19 C 1.36934 * 120.67796 * 234.01592 * 18 17 16 20 20 H 1.08001 * 119.99833 * 27.37210 * 19 18 17 21 21 C 1.38807 * 120.00233 * 207.37922 * 19 18 17 22 22 N 1.31618 * 119.99885 * 17.24133 * 21 19 18 23 23 Si 1.86802 * 120.00306 * 197.24580 * 21 19 18 24 24 H 1.48499 * 109.47151 * 89.99681 * 23 21 19 25 25 H 1.48496 * 109.47201 * 209.99695 * 23 21 19 26 26 H 1.48495 * 109.46816 * 329.99843 * 23 21 19 27 27 C 1.47033 * 118.64813 * 54.03318 * 18 17 16 28 28 N 1.28591 * 124.44209 * 90.00045 * 3 2 1 29 29 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47668 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.47084 * 60.00493 * 1 2 3 32 32 H 1.08993 * 109.47668 * 239.99996 * 2 1 3 33 33 H 1.08998 * 109.47084 * 119.99507 * 2 1 3 34 34 H 1.08999 * 109.47423 * 270.16720 * 6 5 4 35 35 H 1.09001 * 109.47346 * 30.17464 * 6 5 4 36 36 H 1.09003 * 109.47037 * 150.16943 * 6 5 4 37 37 H 1.09002 * 110.65413 * 259.45954 * 11 10 8 38 38 H 1.08996 * 110.65121 * 22.39117 * 11 10 8 39 39 H 1.08997 * 110.76134 * 278.70443 * 12 11 10 40 40 H 1.09008 * 110.75436 * 155.32685 * 12 11 10 41 41 H 1.09007 * 109.96698 * 85.93785 * 14 10 8 42 42 H 1.08998 * 110.00270 * 324.69129 * 14 10 8 43 43 H 1.08990 * 109.44963 * 181.71158 * 15 13 12 44 44 H 1.09001 * 109.43771 * 301.64953 * 15 13 12 45 45 H 1.09000 * 109.49688 * 180.46932 * 16 15 13 46 46 H 1.09001 * 109.50794 * 300.58080 * 16 15 13 47 47 H 1.09005 * 109.57272 * 64.71634 * 17 16 15 48 48 H 1.09001 * 109.57387 * 185.07713 * 17 16 15 49 49 H 0.97006 * 120.00160 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.57740 * 187.44427 * 27 18 17 51 51 H 1.08999 * 109.57917 * 67.04080 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2610 2.0665 -1.0599 5 6 2.6768 3.2605 -0.7119 6 6 3.0678 4.3902 -1.6294 7 6 2.6855 3.2677 0.6972 8 6 3.0799 4.3827 1.5835 9 8 3.4523 5.4365 1.1055 10 7 3.0265 4.2313 2.9217 11 6 2.5990 3.0239 3.6664 12 6 3.5879 2.9718 4.8595 13 6 3.7739 4.4611 5.2117 14 6 3.3808 5.2347 3.9446 15 6 2.8585 4.8417 6.3706 16 6 3.2271 4.0192 7.6084 17 6 4.6783 4.3155 7.9991 18 7 5.5440 4.0630 6.8390 19 6 6.6187 3.2204 6.9395 20 1 6.6110 2.4195 7.6640 21 6 7.7180 3.3957 6.1104 22 7 7.8902 4.5373 5.4784 23 14 8.9530 2.0114 5.8914 24 1 8.5407 1.1562 4.7496 25 1 10.2960 2.5844 5.6210 26 1 9.0041 1.1932 7.1296 27 6 5.2330 4.7337 5.5681 28 7 2.2606 2.0670 1.0605 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.1321 4.3235 -1.8549 35 1 2.4954 4.3217 -2.5545 36 1 2.8586 5.3427 -1.1425 37 1 1.5741 3.1337 4.0211 38 1 2.6960 2.1342 3.0444 39 1 4.5350 2.5250 4.5570 40 1 3.1531 2.4278 5.6981 41 1 2.5233 5.8755 4.1503 42 1 4.2214 5.8372 3.6004 43 1 2.9751 5.9025 6.5919 44 1 1.8231 4.6398 6.0964 45 1 2.5663 4.2868 8.4330 46 1 3.1198 2.9577 7.3852 47 1 4.7692 5.3586 8.3022 48 1 4.9743 3.6669 8.8236 49 1 8.6583 4.6597 4.8986 50 1 5.8799 4.3446 4.7819 51 1 5.3887 5.8073 5.6740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040557157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:12 Heat of formation + Delta-G solvation = 100.778214 kcal Electronic energy + Delta-G solvation = -32234.749397 eV Core-core repulsion = 28172.565439 eV Total energy + Delta-G solvation = -4062.183958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.73383 -39.97689 -38.26341 -35.77565 -35.26499 -33.33650 -32.87314 -31.64998 -31.01279 -29.90631 -29.16041 -28.17517 -26.28807 -25.29477 -24.47316 -23.07243 -22.52525 -21.96234 -21.13076 -20.63616 -19.46169 -18.11006 -17.39167 -16.84550 -16.80614 -16.48713 -15.55161 -15.36581 -14.83916 -14.80539 -14.17023 -14.03609 -13.99619 -13.58375 -13.48118 -13.22478 -13.15180 -12.96530 -12.76737 -12.62523 -12.51221 -12.34963 -12.29027 -11.96039 -11.85176 -11.68422 -11.50711 -11.10737 -11.05236 -10.92328 -10.69476 -10.49470 -10.37828 -10.32856 -10.15725 -9.96675 -9.92388 -9.74733 -9.51528 -9.38143 -9.29057 -8.45868 -8.38818 -6.65302 -5.76982 -3.18601 1.30140 1.86734 1.97534 3.09961 3.38023 3.38809 3.45047 3.46538 3.78996 4.41270 4.41848 4.50156 4.64131 4.69083 4.77511 5.06006 5.12518 5.13931 5.22828 5.31109 5.40380 5.47971 5.57339 5.57941 5.59420 5.62064 5.64623 5.68343 5.78742 5.86987 5.94614 6.00122 6.08787 6.18269 6.23728 6.27302 6.36034 6.38946 6.47648 6.52944 6.54797 6.73567 6.81663 6.88622 6.93501 7.03568 7.36192 7.66409 7.72725 7.81431 8.04355 8.31754 8.46074 9.22629 9.86565 10.43531 11.31345 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.003372 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.456498 B = 8302.515946 C = 8769.348292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.145 5.145 4 N -0.295 5.295 5 C 0.060 3.940 6 C -0.068 4.068 7 C -0.036 4.036 8 C 0.621 3.379 9 O -0.531 6.531 10 N -0.599 5.599 11 C 0.091 3.909 12 C -0.108 4.108 13 C -0.095 4.095 14 C 0.120 3.880 15 C -0.094 4.094 16 C -0.135 4.135 17 C 0.144 3.856 18 N -0.589 5.589 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.189 3.811 28 N -0.245 5.245 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.254 0.746 50 H 0.089 0.911 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 -6.719 -9.462 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.048 5.048 4 N -0.136 5.136 5 C -0.104 4.104 6 C -0.126 4.126 7 C -0.199 4.199 8 C 0.407 3.593 9 O -0.407 6.407 10 N -0.332 5.332 11 C -0.032 4.032 12 C -0.146 4.146 13 C -0.097 4.097 14 C -0.002 4.002 15 C -0.132 4.132 16 C -0.174 4.174 17 C 0.018 3.982 18 N -0.311 5.311 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.728 3.272 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.063 3.937 28 N -0.093 5.093 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.107 0.893 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -16.635 -7.384 -9.888 20.713 hybrid contribution 0.923 -0.054 -0.077 0.928 sum -15.712 -7.438 -9.965 20.037 Atomic orbital electron populations 1.22182 0.92955 1.03958 1.03760 1.22073 0.96126 0.74233 1.06131 1.48169 1.43866 1.13384 0.99337 1.73902 1.19121 1.05109 1.15449 1.23245 1.00790 0.93753 0.92630 1.20224 1.02042 0.93730 0.96633 1.22914 1.09200 0.93558 0.94197 1.16176 0.78103 0.85000 0.80031 1.90777 1.48379 1.27078 1.74461 1.48599 1.63750 1.16917 1.03887 1.22949 0.97963 0.88304 0.93959 1.22671 0.99268 0.96517 0.96167 1.21853 1.00737 0.94619 0.92525 1.22154 1.00322 0.90887 0.86850 1.21358 0.97122 0.99650 0.95050 1.22087 0.98877 0.99967 0.96514 1.20907 0.89049 0.97480 0.90803 1.44011 1.29363 1.53148 1.04568 1.19146 0.93296 1.05886 1.19751 0.91714 1.24999 0.96761 0.96233 1.01462 1.70017 1.29646 1.21863 1.32888 0.86359 0.80807 0.81992 0.78054 1.21583 1.21775 1.20457 1.20759 0.88127 0.95030 0.89787 1.74415 1.15160 1.04486 1.15227 0.89469 0.91267 0.91423 0.87199 0.87039 0.90031 0.90846 0.88585 0.91761 0.88657 0.90320 0.90256 0.91924 0.90002 0.92475 0.93489 0.93206 0.92052 0.96577 0.92996 0.93602 0.89272 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.59 16 2 C 0.13 0.96 7.24 -4.04 -0.03 0.93 16 3 N -0.15 -1.78 3.94 -10.61 -0.04 -1.82 16 4 N -0.29 -3.97 12.01 33.92 0.41 -3.57 16 5 C 0.06 0.86 7.39 -81.88 -0.61 0.26 16 6 C -0.07 -0.80 10.00 36.01 0.36 -0.44 16 7 C -0.04 -0.57 7.05 -82.68 -0.58 -1.16 16 8 C 0.62 11.10 7.90 -12.35 -0.10 11.00 16 9 O -0.53 -10.46 15.55 5.31 0.08 -10.38 16 10 N -0.60 -10.24 3.30 -170.95 -0.56 -10.81 16 11 C 0.09 1.37 6.73 -2.05 -0.01 1.36 16 12 C -0.11 -1.86 5.76 -25.04 -0.14 -2.00 16 13 C -0.09 -1.71 0.63 -154.03 -0.10 -1.80 16 14 C 0.12 2.09 6.28 -3.14 -0.02 2.07 16 15 C -0.09 -1.49 4.46 -26.92 -0.12 -1.61 16 16 C -0.14 -2.20 5.87 -26.57 -0.16 -2.36 16 17 C 0.14 2.91 6.50 -3.71 -0.02 2.88 16 18 N -0.59 -14.17 2.81 -172.56 -0.49 -14.66 16 19 C -0.25 -6.71 9.59 -15.06 -0.14 -6.86 16 20 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -26.10 11.18 55.49 0.62 -25.48 16 23 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.19 4.37 3.65 -3.93 -0.01 4.35 16 28 N -0.25 -3.51 9.18 33.42 0.31 -3.20 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.22 6.77 -51.93 -0.35 0.87 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.41 5.51 -51.93 -0.29 1.13 16 39 H 0.08 1.60 7.74 -51.93 -0.40 1.20 16 40 H 0.08 1.28 5.90 -51.92 -0.31 0.97 16 41 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 42 H 0.08 1.59 7.59 -51.93 -0.39 1.19 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.00 6.20 -51.93 -0.32 0.68 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.09 2.38 5.91 -51.93 -0.31 2.08 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -32.40 396.35 -8.35 -40.75 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.22 Total: 0.43 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.39 Total: 6.07 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.24 Total: -59.53 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.40 -8.35 -40.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040557157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.530 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds