Wall clock time and date at job start Wed Apr 1 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46713 * 2 1 4 4 N 1.28518 * 124.44324 * 269.96934 * 3 2 1 5 5 C 1.31134 * 109.05533 * 179.73442 * 4 3 2 6 6 C 1.50699 * 127.10699 * 180.29408 * 5 4 3 7 7 C 1.40914 * 105.77945 * 0.43565 * 5 4 3 8 8 C 1.47799 * 127.23977 * 179.83187 * 7 5 4 9 9 O 1.21561 * 119.99907 * 359.72135 * 8 7 5 10 10 N 1.34777 * 120.00426 * 179.70813 * 8 7 5 11 11 C 1.48160 * 127.01860 * 359.97438 * 10 8 7 12 12 C 1.55048 * 103.30636 * 141.00701 * 11 10 8 13 13 C 1.54167 * 102.72557 * 37.01767 * 12 11 10 14 14 C 1.47608 * 127.02583 * 180.02562 * 10 8 7 15 15 C 1.52509 * 110.01546 * 97.40517 * 13 12 11 16 16 C 1.53120 * 109.61949 * 61.65998 * 15 13 12 17 17 C 1.53184 * 109.28634 * 60.52779 * 16 15 13 18 18 N 1.46932 * 108.87549 * 304.89819 * 17 16 15 19 19 C 1.36934 * 120.67796 * 234.01592 * 18 17 16 20 20 H 1.08001 * 119.99833 * 27.37210 * 19 18 17 21 21 C 1.38807 * 120.00233 * 207.37922 * 19 18 17 22 22 N 1.31618 * 119.99885 * 17.24133 * 21 19 18 23 23 Si 1.86802 * 120.00306 * 197.24580 * 21 19 18 24 24 H 1.48499 * 109.47151 * 89.99681 * 23 21 19 25 25 H 1.48496 * 109.47201 * 209.99695 * 23 21 19 26 26 H 1.48495 * 109.46816 * 329.99843 * 23 21 19 27 27 C 1.47033 * 118.64813 * 54.03318 * 18 17 16 28 28 N 1.28591 * 124.44209 * 90.00045 * 3 2 1 29 29 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47668 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.47084 * 60.00493 * 1 2 3 32 32 H 1.08993 * 109.47668 * 239.99996 * 2 1 3 33 33 H 1.08998 * 109.47084 * 119.99507 * 2 1 3 34 34 H 1.08999 * 109.47423 * 270.16720 * 6 5 4 35 35 H 1.09001 * 109.47346 * 30.17464 * 6 5 4 36 36 H 1.09003 * 109.47037 * 150.16943 * 6 5 4 37 37 H 1.09002 * 110.65413 * 259.45954 * 11 10 8 38 38 H 1.08996 * 110.65121 * 22.39117 * 11 10 8 39 39 H 1.08997 * 110.76134 * 278.70443 * 12 11 10 40 40 H 1.09008 * 110.75436 * 155.32685 * 12 11 10 41 41 H 1.09007 * 109.96698 * 85.93785 * 14 10 8 42 42 H 1.08998 * 110.00270 * 324.69129 * 14 10 8 43 43 H 1.08990 * 109.44963 * 181.71158 * 15 13 12 44 44 H 1.09001 * 109.43771 * 301.64953 * 15 13 12 45 45 H 1.09000 * 109.49688 * 180.46932 * 16 15 13 46 46 H 1.09001 * 109.50794 * 300.58080 * 16 15 13 47 47 H 1.09005 * 109.57272 * 64.71634 * 17 16 15 48 48 H 1.09001 * 109.57387 * 185.07713 * 17 16 15 49 49 H 0.97006 * 120.00160 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.57740 * 187.44427 * 27 18 17 51 51 H 1.08999 * 109.57917 * 67.04080 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2610 2.0665 -1.0599 5 6 2.6768 3.2605 -0.7119 6 6 3.0678 4.3902 -1.6294 7 6 2.6855 3.2677 0.6972 8 6 3.0799 4.3827 1.5835 9 8 3.4523 5.4365 1.1055 10 7 3.0265 4.2313 2.9217 11 6 2.5990 3.0239 3.6664 12 6 3.5879 2.9718 4.8595 13 6 3.7739 4.4611 5.2117 14 6 3.3808 5.2347 3.9446 15 6 2.8585 4.8417 6.3706 16 6 3.2271 4.0192 7.6084 17 6 4.6783 4.3155 7.9991 18 7 5.5440 4.0630 6.8390 19 6 6.6187 3.2204 6.9395 20 1 6.6110 2.4195 7.6640 21 6 7.7180 3.3957 6.1104 22 7 7.8902 4.5373 5.4784 23 14 8.9530 2.0114 5.8914 24 1 8.5407 1.1562 4.7496 25 1 10.2960 2.5844 5.6210 26 1 9.0041 1.1932 7.1296 27 6 5.2330 4.7337 5.5681 28 7 2.2606 2.0670 1.0605 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.1321 4.3235 -1.8549 35 1 2.4954 4.3217 -2.5545 36 1 2.8586 5.3427 -1.1425 37 1 1.5741 3.1337 4.0211 38 1 2.6960 2.1342 3.0444 39 1 4.5350 2.5250 4.5570 40 1 3.1531 2.4278 5.6981 41 1 2.5233 5.8755 4.1503 42 1 4.2214 5.8372 3.6004 43 1 2.9751 5.9025 6.5919 44 1 1.8231 4.6398 6.0964 45 1 2.5663 4.2868 8.4330 46 1 3.1198 2.9577 7.3852 47 1 4.7692 5.3586 8.3022 48 1 4.9743 3.6669 8.8236 49 1 8.6583 4.6597 4.8986 50 1 5.8799 4.3446 4.7819 51 1 5.3887 5.8073 5.6740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040557157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:11 Heat of formation + Delta-G solvation = 80.554148 kcal Electronic energy + Delta-G solvation = -32235.626378 eV Core-core repulsion = 28172.565439 eV Total energy + Delta-G solvation = -4063.060939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.77468 -41.39825 -39.72566 -37.33901 -36.08307 -34.93514 -34.15451 -32.82167 -32.26530 -31.66071 -30.54766 -29.14149 -27.62357 -27.15469 -25.61379 -24.34806 -23.78430 -23.36811 -22.25844 -22.03407 -20.76629 -19.63665 -18.66864 -18.30634 -17.98253 -17.74907 -16.86575 -16.77862 -16.68080 -15.77765 -15.56932 -15.42338 -15.19120 -14.97154 -14.78965 -14.62937 -14.29969 -14.27452 -14.00130 -13.84355 -13.71263 -13.43896 -13.35616 -13.24072 -13.02098 -12.90446 -12.78219 -12.61026 -12.48105 -12.38382 -12.25362 -12.14337 -11.99225 -11.79297 -11.55752 -11.43097 -11.31647 -11.24572 -11.05724 -11.00007 -10.52461 -10.33187 -9.73979 -8.65119 -7.86008 -5.29642 0.15010 0.78019 1.13483 1.42576 1.44168 1.52674 1.83186 2.08469 2.49927 2.74393 3.26781 3.40799 3.60032 3.72851 3.77257 3.90876 3.91601 3.93153 3.99686 4.20907 4.27022 4.32772 4.38697 4.43051 4.48440 4.55861 4.65029 4.67010 4.71057 4.72636 4.77745 4.80012 4.85928 4.92133 4.93618 5.03464 5.07835 5.15363 5.19597 5.21472 5.26153 5.30001 5.34462 5.45196 5.54590 5.60430 5.61667 5.72277 5.78715 6.38154 6.40743 6.86228 7.07243 7.15927 7.89469 8.40694 9.19595 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.003372 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.456498 B = 8302.515946 C = 8769.348292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.131 5.131 4 N -0.296 5.296 5 C 0.049 3.951 6 C -0.065 4.065 7 C -0.066 4.066 8 C 0.615 3.385 9 O -0.561 6.561 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.100 4.100 13 C -0.085 4.085 14 C 0.124 3.876 15 C -0.090 4.090 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.605 5.605 19 C -0.250 4.250 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.957 3.043 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.263 1.263 27 C 0.203 3.797 28 N -0.244 5.244 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.009 0.991 48 H 0.053 0.947 49 H 0.245 0.755 50 H 0.044 0.956 51 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.646 -9.147 -9.101 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.000 4.000 3 N -0.035 5.035 4 N -0.138 5.138 5 C -0.114 4.114 6 C -0.124 4.124 7 C -0.227 4.227 8 C 0.402 3.598 9 O -0.439 6.439 10 N -0.336 5.336 11 C -0.020 4.020 12 C -0.139 4.139 13 C -0.088 4.088 14 C 0.001 3.999 15 C -0.127 4.127 16 C -0.161 4.161 17 C 0.011 3.989 18 N -0.328 5.328 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.786 3.214 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.187 1.187 27 C 0.077 3.923 28 N -0.094 5.094 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.027 0.973 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -19.755 -9.833 -9.491 24.021 hybrid contribution 1.870 0.628 -0.157 1.979 sum -17.885 -9.204 -9.648 22.309 Atomic orbital electron populations 1.22157 0.91512 1.05659 1.02718 1.22688 0.97289 0.71968 1.08074 1.48822 1.41782 1.14365 0.98568 1.73913 1.19247 1.04822 1.15769 1.23581 1.00731 0.94618 0.92439 1.20252 1.02566 0.92433 0.97116 1.22672 1.11566 0.93869 0.94575 1.16493 0.77628 0.85285 0.80357 1.90746 1.49736 1.28428 1.75040 1.48698 1.63618 1.17469 1.03830 1.22997 0.98635 0.87660 0.92658 1.22543 0.98142 0.95444 0.97725 1.21635 0.97597 0.95600 0.93943 1.22067 1.00138 0.91010 0.86675 1.21364 0.98238 0.99598 0.93519 1.21964 0.96071 1.00324 0.97781 1.21131 0.91156 0.97087 0.89542 1.44266 1.29490 1.52865 1.06128 1.19486 0.93717 1.05950 1.18918 0.91279 1.25702 0.98836 0.98076 1.02008 1.70193 1.30093 1.23854 1.34099 0.85412 0.78233 0.79523 0.78268 1.21822 1.22612 1.18736 1.20414 0.90965 0.92511 0.88434 1.74328 1.15031 1.04019 1.15981 0.86368 0.92346 0.92340 0.85093 0.85360 0.89781 0.88425 0.89847 0.88553 0.88300 0.94396 0.88340 0.89326 0.93336 0.92530 0.89721 0.89637 0.91534 0.97287 0.92881 0.94563 0.93781 0.99665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.24 71.98 0.74 -0.64 16 2 C 0.12 1.34 7.24 86.38 0.63 1.96 16 3 N -0.13 -2.95 3.94 -187.49 -0.74 -3.69 16 4 N -0.30 -7.55 12.01 -46.59 -0.56 -8.11 16 5 C 0.05 1.40 7.39 43.32 0.32 1.72 16 6 C -0.07 -1.54 10.00 71.24 0.71 -0.83 16 7 C -0.07 -2.11 7.05 42.24 0.30 -1.81 16 8 C 0.62 22.44 7.90 86.77 0.69 23.13 16 9 O -0.56 -23.09 15.55 -3.91 -0.06 -23.16 16 10 N -0.60 -20.59 3.30 -813.04 -2.68 -23.27 16 11 C 0.10 2.88 6.73 86.76 0.58 3.46 16 12 C -0.10 -3.34 5.76 31.69 0.18 -3.16 16 13 C -0.09 -3.04 0.63 -51.87 -0.03 -3.08 16 14 C 0.12 4.34 6.28 86.36 0.54 4.89 16 15 C -0.09 -2.56 4.46 30.47 0.14 -2.43 16 16 C -0.12 -3.57 5.87 30.70 0.18 -3.39 16 17 C 0.14 5.35 6.50 86.36 0.56 5.92 16 18 N -0.60 -29.66 2.81 -699.87 -1.97 -31.63 16 19 C -0.25 -13.63 9.59 84.03 0.81 -12.82 16 20 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 21 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 22 N -0.94 -57.29 11.18 21.65 0.24 -57.04 16 23 Si 0.96 45.89 29.59 68.60 2.03 47.92 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.20 9.83 3.65 86.16 0.31 10.14 16 28 N -0.24 -6.66 9.18 -48.17 -0.44 -7.10 16 29 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.19 6.77 -2.39 -0.02 2.17 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.10 2.76 5.51 -2.39 -0.01 2.75 16 39 H 0.04 1.57 7.74 -2.39 -0.02 1.55 16 40 H 0.10 2.89 5.90 -2.38 -0.01 2.88 16 41 H 0.09 2.65 7.68 -2.38 -0.02 2.63 16 42 H 0.05 2.01 7.59 -2.39 -0.02 2.00 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 1.90 6.20 -2.39 -0.01 1.89 16 47 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 48 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16 49 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 50 H 0.04 2.53 5.91 -2.39 -0.01 2.51 16 51 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: -1.00 -75.16 396.35 3.82 -71.34 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.93 Total: 14.16 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 7.07 Total: 20.58 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -6.15 Total: -130.84 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.16 3.82 -71.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040557157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.896 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds