Wall clock time and date at job start Wed Apr 1 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35312 * 125.87252 * 2 1 4 4 C 1.35350 * 106.17529 * 180.11836 * 3 2 1 5 5 C 1.50703 * 126.74644 * 179.85343 * 4 3 2 6 6 C 1.53002 * 109.46868 * 124.71343 * 5 4 3 7 7 C 1.50703 * 109.46871 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00228 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99566 * 180.02562 * 7 6 5 10 10 C 1.47079 * 125.63040 * 0.02562 * 9 7 6 11 11 C 1.54458 * 107.29642 * 180.72836 * 10 9 7 12 12 C 1.54393 * 102.87250 * 21.50745 * 11 10 9 13 13 C 1.47577 * 125.62285 * 179.72044 * 9 7 6 14 14 C 1.52100 * 110.51127 * 207.36103 * 12 11 10 15 15 C 1.53344 * 109.44422 * 295.90243 * 14 12 11 16 16 N 1.46937 * 108.68628 * 306.70643 * 15 14 12 17 17 C 1.36941 * 120.54600 * 234.31939 * 16 15 14 18 18 H 1.08001 * 120.00233 * 27.99401 * 17 16 15 19 19 C 1.38809 * 119.99503 * 207.98466 * 17 16 15 20 20 N 1.31619 * 120.00328 * 17.46952 * 19 17 16 21 21 Si 1.86803 * 119.99949 * 197.46654 * 19 17 16 22 22 H 1.48495 * 109.47143 * 60.00126 * 21 19 17 23 23 H 1.48498 * 109.47387 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47053 * 300.00194 * 21 19 17 25 25 C 1.46926 * 118.89614 * 54.34211 * 16 15 14 26 26 C 1.52109 * 110.51041 * 83.32831 * 12 11 10 27 27 N 1.33761 * 106.49853 * 359.59230 * 4 3 2 28 28 N 1.28637 * 108.88898 * 0.26043 * 27 4 3 29 29 H 1.09001 * 109.47162 * 270.32165 * 1 2 3 30 30 H 1.09003 * 109.47197 * 30.32440 * 1 2 3 31 31 H 1.09000 * 109.47525 * 150.32442 * 1 2 3 32 32 H 1.08005 * 126.90746 * 359.97168 * 3 2 1 33 33 H 1.09000 * 109.47427 * 4.71234 * 5 4 3 34 34 H 1.09000 * 109.46878 * 244.70972 * 5 4 3 35 35 H 1.09000 * 109.47185 * 59.99743 * 6 5 4 36 36 H 1.08991 * 109.47248 * 299.99747 * 6 5 4 37 37 H 1.09004 * 109.87690 * 300.14908 * 10 9 7 38 38 H 1.08993 * 109.87728 * 61.30299 * 10 9 7 39 39 H 1.09002 * 110.73632 * 139.85106 * 11 10 9 40 40 H 1.09002 * 110.73410 * 263.16004 * 11 10 9 41 41 H 1.08999 * 110.37419 * 275.75873 * 13 9 7 42 42 H 1.08999 * 110.37931 * 38.11302 * 13 9 7 43 43 H 1.09006 * 109.47815 * 55.88971 * 14 12 11 44 44 H 1.09003 * 109.48120 * 175.91054 * 14 12 11 45 45 H 1.09000 * 109.60749 * 186.94602 * 15 14 12 46 46 H 1.08998 * 109.60308 * 66.46154 * 15 14 12 47 47 H 0.97000 * 120.00006 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.60219 * 185.89194 * 25 16 15 49 49 H 1.09002 * 109.73807 * 65.49120 * 25 16 15 50 50 H 1.08998 * 109.47330 * 184.08056 * 26 12 11 51 51 H 1.08994 * 109.47558 * 304.09390 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6403 -0.0027 5 6 4.7880 1.4733 -0.0069 6 6 5.6700 1.0720 1.1772 7 6 6.9262 1.9046 1.1726 8 8 7.0987 2.7373 0.3078 9 7 7.8579 1.7238 2.1296 10 6 7.7768 0.7534 3.2319 11 6 9.0554 0.9172 4.0829 12 6 9.5258 2.3437 3.7258 13 6 9.1305 2.4626 2.2408 14 6 11.0327 2.4654 3.8925 15 6 11.4008 2.2666 5.3678 16 7 10.6023 3.1938 6.1813 17 6 11.2113 4.0551 7.0545 18 1 12.2170 4.3983 6.8614 19 6 10.5360 4.4871 8.1876 20 7 9.4765 3.8317 8.6123 21 14 11.1308 5.9988 9.1099 22 1 11.1006 7.1750 8.2040 23 1 10.2449 6.2481 10.2753 24 1 12.5201 5.7746 9.5839 25 6 9.1396 3.1810 6.0425 26 6 8.7846 3.3746 4.5634 27 7 3.4575 -0.6952 0.0049 28 7 2.2191 -1.0431 0.0064 29 1 -0.3633 0.0058 1.0277 30 1 -0.3634 0.8871 -0.5189 31 1 -0.3634 -0.8929 -0.5088 32 1 1.9381 2.1281 -0.0004 33 1 4.5249 2.5277 0.0770 34 1 5.3311 1.3071 -0.9372 35 1 5.9331 0.0175 1.0933 36 1 5.1270 1.2381 2.1075 37 1 6.8969 0.9580 3.8418 38 1 7.7255 -0.2590 2.8313 39 1 8.8241 0.8419 5.1454 40 1 9.8062 0.1805 3.7972 41 1 9.8912 2.0055 1.6078 42 1 8.9874 3.5084 1.9687 43 1 11.5278 1.7046 3.2888 44 1 11.3558 3.4544 3.5675 45 1 12.4611 2.4743 5.5114 46 1 11.1834 1.2403 5.6638 47 1 9.0048 4.1334 9.4044 48 1 8.7094 3.9914 6.6309 49 1 8.7451 2.2266 6.3913 50 1 9.0759 4.3765 4.2480 51 1 7.7105 3.2488 4.4278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040957074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:38 Heat of formation + Delta-G solvation = 81.849698 kcal Electronic energy + Delta-G solvation = -30679.168223 eV Core-core repulsion = 26616.163464 eV Total energy + Delta-G solvation = -4063.004760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.55326 -40.34636 -38.56738 -35.87188 -35.42870 -33.72123 -33.07216 -31.04234 -30.36341 -29.94714 -29.43886 -28.33332 -27.17782 -25.16335 -23.73722 -22.87887 -22.41236 -22.21447 -21.27218 -20.70690 -19.15379 -18.02343 -17.61201 -17.02069 -16.89592 -16.31470 -16.17701 -15.42718 -15.15158 -14.88880 -14.70041 -14.26576 -13.90220 -13.86339 -13.66166 -13.55229 -13.33748 -13.06575 -12.96495 -12.75294 -12.68568 -12.33949 -12.22130 -12.08006 -11.83173 -11.52757 -11.51655 -11.28094 -11.04135 -10.94605 -10.70871 -10.69299 -10.45023 -10.38047 -10.18824 -10.12093 -9.84766 -9.80915 -9.51502 -9.46709 -9.35938 -8.48902 -8.43654 -6.65108 -5.78645 -3.20192 1.25510 1.99974 2.22430 2.72460 3.10691 3.38742 3.44476 3.46202 3.93454 4.17704 4.40586 4.45835 4.50431 4.66558 4.71431 4.75013 4.80804 4.92361 5.00692 5.11221 5.16985 5.33895 5.38205 5.39700 5.42567 5.46010 5.62294 5.70224 5.75952 5.84210 5.85370 5.97221 5.99573 6.00776 6.11897 6.16394 6.19783 6.27382 6.31648 6.40651 6.53901 6.64400 6.72728 6.76331 6.87561 6.98955 7.36992 7.64731 7.66651 7.80199 8.20222 8.24557 8.46131 9.22315 9.86056 10.42340 11.29649 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.002029 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.463119 B =13796.739531 C =14562.568347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.048 4.048 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.129 4.129 7 C 0.528 3.472 8 O -0.550 6.550 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.056 4.056 13 C 0.113 3.887 14 C -0.118 4.118 15 C 0.147 3.853 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.124 4.124 27 N -0.264 5.264 28 N -0.088 5.088 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.086 0.914 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 -7.232 -16.525 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.199 4.199 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.170 4.170 7 C 0.317 3.683 8 O -0.428 6.428 9 N -0.347 5.347 10 C -0.022 4.022 11 C -0.162 4.162 12 C -0.056 4.056 13 C -0.009 4.009 14 C -0.158 4.158 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.047 3.953 26 C -0.164 4.164 27 N -0.131 5.131 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.209 0.791 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.037 0.963 50 H 0.074 0.926 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.310 -8.303 -16.868 24.889 hybrid contribution -0.126 1.886 0.619 1.989 sum -16.436 -6.418 -16.249 23.987 Atomic orbital electron populations 1.22270 0.72725 1.05905 1.05093 1.47239 1.09416 1.04995 1.47358 1.23440 0.90860 0.94780 1.10792 1.22056 0.95380 0.91472 1.06465 1.19608 0.89315 0.97464 0.99129 1.21554 0.93819 1.01223 1.00357 1.20256 0.84070 0.83631 0.80339 1.90687 1.78939 1.36137 1.37075 1.48577 1.19921 1.38785 1.27380 1.22134 0.99933 0.91961 0.88130 1.22722 0.95489 0.97013 1.00954 1.21000 0.96768 0.95349 0.92531 1.22359 0.84372 0.97062 0.97079 1.21846 0.93078 1.01093 0.99745 1.20909 0.95321 0.92954 0.88726 1.44031 1.01462 1.40706 1.45147 1.19145 1.00028 1.19048 0.99862 0.91802 1.25018 0.98820 0.99602 0.96239 1.70017 1.21762 1.38622 1.24375 0.86389 0.77992 0.83479 0.79032 1.21074 1.21699 1.20914 1.20808 0.84174 1.00464 0.89849 1.22002 0.97561 0.97330 0.99478 1.75052 1.09367 1.12088 1.16550 1.78322 0.96482 1.12138 1.19797 0.88993 0.88272 0.88048 0.79145 0.89274 0.89262 0.88219 0.88978 0.91404 0.91653 0.88874 0.90965 0.91918 0.90685 0.92880 0.92075 0.92839 0.96288 0.93648 0.89553 0.96271 0.92576 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.39 59.84 0.68 0.88 16 2 N -0.30 -2.31 3.74 -68.06 -0.25 -2.57 16 3 C -0.05 -0.37 11.54 -17.05 -0.20 -0.56 16 4 C -0.02 -0.16 6.50 -82.78 -0.54 -0.70 16 5 C -0.02 -0.16 5.08 -27.88 -0.14 -0.30 16 6 C -0.13 -1.40 4.87 -27.88 -0.14 -1.54 16 7 C 0.53 7.42 7.85 -10.98 -0.09 7.34 16 8 O -0.55 -9.42 16.25 5.55 0.09 -9.33 16 9 N -0.61 -8.53 3.32 -170.75 -0.57 -9.09 16 10 C 0.10 1.24 6.11 -2.96 -0.02 1.22 16 11 C -0.12 -1.73 4.92 -25.24 -0.12 -1.85 16 12 C -0.06 -0.87 0.55 -154.10 -0.08 -0.96 16 13 C 0.11 1.69 5.81 -2.86 -0.02 1.67 16 14 C -0.12 -1.93 4.84 -27.01 -0.13 -2.07 16 15 C 0.15 2.93 6.24 -3.63 -0.02 2.91 16 16 N -0.59 -14.24 2.98 -172.12 -0.51 -14.75 16 17 C -0.25 -6.76 9.57 -15.06 -0.14 -6.90 16 18 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 20 N -0.90 -25.73 11.20 55.49 0.62 -25.11 16 21 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 3.93 5.01 -3.63 -0.02 3.91 16 26 C -0.12 -2.31 4.85 -27.01 -0.13 -2.44 16 27 N -0.26 -3.34 12.40 33.29 0.41 -2.93 16 28 N -0.09 -1.01 13.17 60.35 0.79 -0.22 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.19 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.46 6.18 -51.93 -0.32 1.14 16 40 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 41 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 42 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 43 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.38 7.62 -51.93 -0.40 -0.02 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.09 2.26 6.02 -51.93 -0.31 1.95 16 49 H 0.02 0.45 6.56 -51.93 -0.34 0.11 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -34.36 401.83 -8.05 -42.41 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.47 Total: -1.54 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.19 Total: 0.57 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.49 Total: -54.67 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.36 -8.05 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040957074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.257 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds