Wall clock time and date at job start Wed Apr 1 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35312 * 125.87252 * 2 1 4 4 C 1.35350 * 106.17529 * 180.11836 * 3 2 1 5 5 C 1.50703 * 126.74644 * 179.85343 * 4 3 2 6 6 C 1.53002 * 109.46868 * 124.71343 * 5 4 3 7 7 C 1.50703 * 109.46871 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00228 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99566 * 180.02562 * 7 6 5 10 10 C 1.47079 * 125.63040 * 0.02562 * 9 7 6 11 11 C 1.54458 * 107.29642 * 180.72836 * 10 9 7 12 12 C 1.54393 * 102.87250 * 21.50745 * 11 10 9 13 13 C 1.47577 * 125.62285 * 179.72044 * 9 7 6 14 14 C 1.52100 * 110.51127 * 207.36103 * 12 11 10 15 15 C 1.53344 * 109.44422 * 295.90243 * 14 12 11 16 16 N 1.46937 * 108.68628 * 306.70643 * 15 14 12 17 17 C 1.36941 * 120.54600 * 234.31939 * 16 15 14 18 18 H 1.08001 * 120.00233 * 27.99401 * 17 16 15 19 19 C 1.38809 * 119.99503 * 207.98466 * 17 16 15 20 20 N 1.31619 * 120.00328 * 17.46952 * 19 17 16 21 21 Si 1.86803 * 119.99949 * 197.46654 * 19 17 16 22 22 H 1.48495 * 109.47143 * 60.00126 * 21 19 17 23 23 H 1.48498 * 109.47387 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47053 * 300.00194 * 21 19 17 25 25 C 1.46926 * 118.89614 * 54.34211 * 16 15 14 26 26 C 1.52109 * 110.51041 * 83.32831 * 12 11 10 27 27 N 1.33761 * 106.49853 * 359.59230 * 4 3 2 28 28 N 1.28637 * 108.88898 * 0.26043 * 27 4 3 29 29 H 1.09001 * 109.47162 * 270.32165 * 1 2 3 30 30 H 1.09003 * 109.47197 * 30.32440 * 1 2 3 31 31 H 1.09000 * 109.47525 * 150.32442 * 1 2 3 32 32 H 1.08005 * 126.90746 * 359.97168 * 3 2 1 33 33 H 1.09000 * 109.47427 * 4.71234 * 5 4 3 34 34 H 1.09000 * 109.46878 * 244.70972 * 5 4 3 35 35 H 1.09000 * 109.47185 * 59.99743 * 6 5 4 36 36 H 1.08991 * 109.47248 * 299.99747 * 6 5 4 37 37 H 1.09004 * 109.87690 * 300.14908 * 10 9 7 38 38 H 1.08993 * 109.87728 * 61.30299 * 10 9 7 39 39 H 1.09002 * 110.73632 * 139.85106 * 11 10 9 40 40 H 1.09002 * 110.73410 * 263.16004 * 11 10 9 41 41 H 1.08999 * 110.37419 * 275.75873 * 13 9 7 42 42 H 1.08999 * 110.37931 * 38.11302 * 13 9 7 43 43 H 1.09006 * 109.47815 * 55.88971 * 14 12 11 44 44 H 1.09003 * 109.48120 * 175.91054 * 14 12 11 45 45 H 1.09000 * 109.60749 * 186.94602 * 15 14 12 46 46 H 1.08998 * 109.60308 * 66.46154 * 15 14 12 47 47 H 0.97000 * 120.00006 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.60219 * 185.89194 * 25 16 15 49 49 H 1.09002 * 109.73807 * 65.49120 * 25 16 15 50 50 H 1.08998 * 109.47330 * 184.08056 * 26 12 11 51 51 H 1.08994 * 109.47558 * 304.09390 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6403 -0.0027 5 6 4.7880 1.4733 -0.0069 6 6 5.6700 1.0720 1.1772 7 6 6.9262 1.9046 1.1726 8 8 7.0987 2.7373 0.3078 9 7 7.8579 1.7238 2.1296 10 6 7.7768 0.7534 3.2319 11 6 9.0554 0.9172 4.0829 12 6 9.5258 2.3437 3.7258 13 6 9.1305 2.4626 2.2408 14 6 11.0327 2.4654 3.8925 15 6 11.4008 2.2666 5.3678 16 7 10.6023 3.1938 6.1813 17 6 11.2113 4.0551 7.0545 18 1 12.2170 4.3983 6.8614 19 6 10.5360 4.4871 8.1876 20 7 9.4765 3.8317 8.6123 21 14 11.1308 5.9988 9.1099 22 1 11.1006 7.1750 8.2040 23 1 10.2449 6.2481 10.2753 24 1 12.5201 5.7746 9.5839 25 6 9.1396 3.1810 6.0425 26 6 8.7846 3.3746 4.5634 27 7 3.4575 -0.6952 0.0049 28 7 2.2191 -1.0431 0.0064 29 1 -0.3633 0.0058 1.0277 30 1 -0.3634 0.8871 -0.5189 31 1 -0.3634 -0.8929 -0.5088 32 1 1.9381 2.1281 -0.0004 33 1 4.5249 2.5277 0.0770 34 1 5.3311 1.3071 -0.9372 35 1 5.9331 0.0175 1.0933 36 1 5.1270 1.2381 2.1075 37 1 6.8969 0.9580 3.8418 38 1 7.7255 -0.2590 2.8313 39 1 8.8241 0.8419 5.1454 40 1 9.8062 0.1805 3.7972 41 1 9.8912 2.0055 1.6078 42 1 8.9874 3.5084 1.9687 43 1 11.5278 1.7046 3.2888 44 1 11.3558 3.4544 3.5675 45 1 12.4611 2.4743 5.5114 46 1 11.1834 1.2403 5.6638 47 1 9.0048 4.1334 9.4044 48 1 8.7094 3.9914 6.6309 49 1 8.7451 2.2266 6.3913 50 1 9.0759 4.3765 4.2480 51 1 7.7105 3.2488 4.4278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040957074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:37 Heat of formation + Delta-G solvation = 60.080202 kcal Electronic energy + Delta-G solvation = -30680.112219 eV Core-core repulsion = 26616.163464 eV Total energy + Delta-G solvation = -4063.948756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.20253 -41.55296 -39.84414 -37.37722 -36.08932 -34.77536 -34.39214 -32.64365 -31.62949 -31.19893 -30.60725 -28.87438 -28.48671 -26.43460 -25.21477 -24.07863 -23.69096 -23.01289 -22.53904 -21.77315 -20.28023 -19.50619 -18.54651 -18.12152 -17.61227 -17.55337 -17.23497 -16.82899 -16.44520 -15.96677 -15.76674 -15.61509 -15.24846 -15.00939 -14.82053 -14.48912 -14.32955 -14.26568 -14.10120 -13.84316 -13.65520 -13.41321 -13.39319 -13.19913 -13.09758 -12.95480 -12.59593 -12.55020 -12.50875 -12.30558 -12.21645 -12.16258 -11.80585 -11.75858 -11.64248 -11.41461 -11.14039 -11.07480 -10.99118 -10.81894 -10.47318 -10.11889 -9.60462 -8.61468 -7.84748 -5.28255 0.65871 1.46919 1.47307 1.49286 1.55545 1.59696 1.64471 2.05724 2.52946 3.26402 3.31496 3.49977 3.64760 3.73591 3.77420 3.84992 3.89707 4.05568 4.15791 4.21099 4.29416 4.32992 4.35608 4.40404 4.41674 4.55984 4.59886 4.65863 4.69359 4.74509 4.75812 4.79230 4.81489 4.93230 4.98013 5.02488 5.06432 5.09383 5.13980 5.23263 5.27483 5.30316 5.37394 5.42946 5.44978 5.57919 5.68610 5.70464 5.83464 6.42792 6.56676 7.15462 7.19004 7.51382 7.91950 8.41984 9.20731 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.002029 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.463119 B =13796.739531 C =14562.568347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.032 4.032 4 C -0.037 4.037 5 C -0.008 4.008 6 C -0.118 4.118 7 C 0.526 3.474 8 O -0.584 6.584 9 N -0.615 5.615 10 C 0.105 3.895 11 C -0.119 4.119 12 C -0.053 4.053 13 C 0.120 3.880 14 C -0.107 4.107 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.183 3.817 26 C -0.109 4.109 27 N -0.302 5.302 28 N -0.124 5.124 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.025 0.975 47 H 0.249 0.751 48 H 0.046 0.954 49 H 0.009 0.991 50 H 0.039 0.961 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 -7.521 -17.791 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.184 4.184 4 C -0.176 4.176 5 C -0.048 4.048 6 C -0.158 4.158 7 C 0.317 3.683 8 O -0.465 6.465 9 N -0.348 5.348 10 C -0.018 4.018 11 C -0.157 4.157 12 C -0.054 4.054 13 C -0.002 4.002 14 C -0.146 4.146 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.057 3.943 26 C -0.148 4.148 27 N -0.168 5.168 28 N -0.103 5.103 29 H 0.125 0.875 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.042 0.958 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.027 0.973 50 H 0.058 0.942 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.326 -8.639 -18.147 26.536 hybrid contribution 0.148 1.985 1.001 2.228 sum -17.178 -6.654 -17.146 25.166 Atomic orbital electron populations 1.22738 0.69831 1.07784 1.06649 1.47658 1.11026 1.04272 1.45300 1.24019 0.89914 0.96234 1.08211 1.22176 0.96483 0.90991 1.07996 1.19503 0.89214 0.97933 0.98113 1.21507 0.92384 1.00613 1.01300 1.20785 0.84624 0.83310 0.79605 1.90671 1.79692 1.37746 1.38414 1.48660 1.19582 1.38836 1.27741 1.22201 0.99182 0.92859 0.87521 1.22663 0.96844 0.95952 1.00195 1.20878 0.96035 0.95653 0.92833 1.22187 0.85403 0.96563 0.96092 1.21718 0.93711 1.01770 0.97445 1.21064 0.94654 0.92212 0.90217 1.44286 1.02191 1.41456 1.45342 1.19453 1.00090 1.19407 1.00119 0.91906 1.25718 0.99371 1.02126 0.97387 1.70158 1.22969 1.39944 1.24745 0.85430 0.77601 0.80346 0.77616 1.20830 1.22073 1.20140 1.20568 0.83614 0.98265 0.91852 1.21759 0.98490 0.97562 0.96994 1.74974 1.10374 1.13533 1.17912 1.78232 0.96635 1.13696 1.21754 0.87542 0.85107 0.87578 0.75264 0.88404 0.90601 0.87849 0.87798 0.90855 0.89046 0.90724 0.89015 0.90453 0.92362 0.89444 0.93007 0.93121 0.95752 0.94217 0.93531 0.97321 0.94215 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.39 127.77 1.46 1.61 16 2 N -0.29 -3.92 3.74 -369.24 -1.38 -5.30 16 3 C -0.03 -0.41 11.54 83.49 0.96 0.56 16 4 C -0.04 -0.72 6.50 41.60 0.27 -0.45 16 5 C -0.01 -0.15 5.08 29.85 0.15 0.00 16 6 C -0.12 -2.37 4.87 29.85 0.15 -2.22 16 7 C 0.53 14.02 7.85 87.66 0.69 14.71 16 8 O -0.58 -19.56 16.25 -3.04 -0.05 -19.61 16 9 N -0.62 -15.88 3.32 -812.53 -2.70 -18.57 16 10 C 0.10 2.28 6.11 86.76 0.53 2.81 16 11 C -0.12 -3.05 4.92 31.56 0.16 -2.89 16 12 C -0.05 -1.59 0.55 -51.92 -0.03 -1.62 16 13 C 0.12 3.36 5.81 86.56 0.50 3.86 16 14 C -0.11 -3.32 4.84 30.41 0.15 -3.17 16 15 C 0.14 5.60 6.24 86.41 0.54 6.14 16 16 N -0.61 -29.73 2.98 -698.48 -2.08 -31.81 16 17 C -0.26 -14.21 9.57 84.03 0.80 -13.41 16 18 H 0.06 3.37 7.89 -2.91 -0.02 3.34 16 19 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 20 N -0.93 -54.57 11.20 21.65 0.24 -54.33 16 21 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 C 0.18 8.51 5.01 86.41 0.43 8.95 16 26 C -0.11 -4.04 4.85 30.41 0.15 -3.90 16 27 N -0.30 -7.52 12.40 -48.60 -0.60 -8.12 16 28 N -0.12 -2.78 13.17 37.02 0.49 -2.29 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.13 -0.53 8.14 -2.39 -0.02 -0.54 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.23 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.24 6.18 -2.39 -0.01 2.23 16 40 H 0.09 2.03 7.98 -2.39 -0.02 2.01 16 41 H 0.08 1.97 7.99 -2.39 -0.02 1.95 16 42 H 0.06 1.84 7.94 -2.39 -0.02 1.82 16 43 H 0.09 2.15 8.10 -2.38 -0.02 2.13 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 46 H 0.02 0.93 7.62 -2.39 -0.02 0.92 16 47 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.05 2.53 6.02 -2.39 -0.01 2.52 16 49 H 0.01 0.42 6.56 -2.39 -0.02 0.41 16 50 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.06 1.98 7.81 -2.39 -0.02 1.96 16 Total: -1.00 -77.29 401.83 4.18 -73.11 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.91 Total: 11.34 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.32 Total: 8.57 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.03 Total: -120.42 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.29 4.18 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040957074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.189 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds