Wall clock time and date at job start Wed Apr 1 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34947 * 126.03750 * 2 1 4 4 C 1.35318 * 107.74809 * 179.97438 * 3 2 1 5 5 C 1.50692 * 126.04131 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47236 * 89.99672 * 5 4 3 7 7 O 1.21284 * 120.00146 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00303 * 180.02562 * 6 5 4 9 9 C 1.47081 * 120.88534 * 180.02562 * 8 6 5 10 10 C 1.53236 * 108.51986 * 231.20633 * 9 8 6 11 11 N 1.46900 * 109.34178 * 306.16513 * 10 9 8 12 12 C 1.46901 * 111.00098 * 187.25458 * 11 10 9 13 13 H 1.09002 * 110.77674 * 298.85238 * 12 11 10 14 14 C 1.55158 * 110.71883 * 62.09107 * 12 11 10 15 15 C 1.54912 * 101.57771 * 153.86425 * 14 12 11 16 16 N 1.47424 * 104.83392 * 322.99091 * 15 14 12 17 17 C 1.36934 * 125.64629 * 204.09680 * 16 15 14 18 18 H 1.07998 * 120.00423 * 164.09201 * 17 16 15 19 19 C 1.38816 * 120.00111 * 344.08502 * 17 16 15 20 20 N 1.31625 * 120.00018 * 351.07531 * 19 17 16 21 21 Si 1.86799 * 120.00263 * 171.06952 * 19 17 16 22 22 H 1.48498 * 109.46792 * 84.97844 * 21 19 17 23 23 H 1.48506 * 109.46921 * 324.98272 * 21 19 17 24 24 H 1.48499 * 109.47458 * 204.98246 * 21 19 17 25 25 C 1.47023 * 108.70325 * 24.35717 * 16 15 14 26 26 C 1.46909 * 111.26642 * 63.10871 * 11 10 9 27 27 C 1.47085 * 120.87840 * 0.02562 * 8 6 5 28 28 C 1.39870 * 107.91698 * 0.25978 * 4 3 2 29 29 N 1.30843 * 108.20356 * 359.55745 * 28 4 3 30 30 H 1.09010 * 109.47293 * 89.99994 * 1 2 3 31 31 H 1.09000 * 109.47571 * 209.99839 * 1 2 3 32 32 H 1.09006 * 109.47253 * 330.00101 * 1 2 3 33 33 H 1.08003 * 126.12780 * 359.95646 * 3 2 1 34 34 H 1.08997 * 109.47194 * 329.99475 * 5 4 3 35 35 H 1.09006 * 109.47349 * 209.99470 * 5 4 3 36 36 H 1.09002 * 109.62841 * 111.49258 * 9 8 6 37 37 H 1.09000 * 109.78347 * 351.01226 * 9 8 6 38 38 H 1.09003 * 109.48963 * 186.20999 * 10 9 8 39 39 H 1.08998 * 109.51390 * 66.14358 * 10 9 8 40 40 H 1.08995 * 111.00304 * 35.79135 * 14 12 11 41 41 H 1.08996 * 111.00035 * 271.94157 * 14 12 11 42 42 H 1.08999 * 110.36266 * 204.14936 * 15 14 12 43 43 H 1.09000 * 110.36514 * 81.82917 * 15 14 12 44 44 H 0.96997 * 119.99854 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.87981 * 118.13384 * 25 16 15 46 46 H 1.09002 * 109.87779 * 239.29736 * 25 16 15 47 47 H 1.08996 * 109.49201 * 56.85473 * 26 11 10 48 48 H 1.09000 * 109.49187 * 176.93454 * 26 11 10 49 49 H 1.08992 * 109.63061 * 248.50471 * 27 8 6 50 50 H 1.08998 * 109.62908 * 8.89317 * 27 8 6 51 51 H 1.07997 * 125.89859 * 179.74006 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5453 0.0013 6 6 5.1753 1.8380 1.4224 7 8 4.5342 1.3788 2.3439 8 7 6.2513 2.6111 1.6694 9 6 6.6665 2.9088 3.0486 10 6 6.8363 4.4252 3.1892 11 7 7.7502 4.9112 2.1469 12 6 8.0748 6.3293 2.3508 13 1 7.1754 6.9430 2.3001 14 6 8.8051 6.5362 3.7040 15 6 9.6193 7.8240 3.4242 16 7 10.0495 7.7009 2.0196 17 6 11.1356 8.3197 1.4604 18 1 11.5219 7.9789 0.5111 19 6 11.7400 9.3850 2.1135 20 7 11.1709 9.9141 3.1760 21 14 13.3611 10.0679 1.4848 22 1 13.0973 11.0597 0.4115 23 1 14.1879 8.9598 0.9425 24 1 14.0867 10.7268 2.6003 25 6 9.1158 6.8086 1.3170 26 6 7.1963 4.6856 0.8051 27 6 7.0416 3.1794 0.5667 28 6 3.5346 -0.7321 -0.0051 29 7 2.2890 -1.1328 0.0007 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.9281 2.1194 -0.0007 34 1 4.5444 2.4802 -0.5125 35 1 5.5824 1.0342 -0.5121 36 1 7.6137 2.4130 3.2610 37 1 5.9057 2.5591 3.7465 38 1 7.2494 4.6554 4.1713 39 1 5.8672 4.9118 3.0791 40 1 9.4648 5.6970 3.9243 41 1 8.0916 6.6930 4.5130 42 1 10.4859 7.8756 4.0833 43 1 8.9910 8.7055 3.5527 44 1 11.5935 10.6583 3.6326 45 1 8.6194 7.3509 0.5122 46 1 9.6551 5.9522 0.9123 47 1 6.2221 5.1683 0.7279 48 1 7.8706 5.1046 0.0581 49 1 8.0247 2.7097 0.5408 50 1 6.5280 3.0063 -0.3790 51 1 4.4053 -1.3710 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046012511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:15 Heat of formation + Delta-G solvation = 67.353347 kcal Electronic energy + Delta-G solvation = -30477.368559 eV Core-core repulsion = 26413.735191 eV Total energy + Delta-G solvation = -4063.633369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16733 -41.09064 -39.77744 -37.95975 -35.51723 -34.56629 -33.82313 -32.92625 -32.06754 -31.01225 -29.54570 -29.08846 -27.54506 -26.50101 -25.75059 -24.53435 -22.69023 -22.01910 -21.88574 -21.35183 -20.93417 -19.77044 -18.85251 -18.21189 -17.72453 -17.06550 -16.70145 -16.56780 -16.42038 -16.18652 -15.93951 -15.82088 -15.38223 -15.20789 -14.88108 -14.56001 -14.49074 -14.19457 -14.11208 -13.85294 -13.51793 -13.43332 -13.40809 -13.33929 -13.10483 -12.78376 -12.70955 -12.63854 -12.51458 -12.43848 -12.21283 -11.99602 -11.78970 -11.70015 -11.57438 -11.53406 -11.48008 -10.78461 -10.66275 -10.33515 -9.73216 -9.28926 -9.21153 -8.78566 -7.87114 -5.23874 0.98418 1.47988 1.49975 1.58767 1.67925 1.74703 1.77355 2.21906 2.50746 2.86210 3.34165 3.66191 3.69648 3.74695 3.79916 4.00129 4.01073 4.09600 4.12914 4.26568 4.31184 4.31810 4.33389 4.41349 4.43915 4.46802 4.51856 4.60561 4.68273 4.68708 4.78188 4.80231 4.86679 4.91244 4.93161 4.96910 5.03993 5.06239 5.14729 5.19424 5.20226 5.45448 5.53189 5.61250 5.72079 5.72745 6.09720 6.15824 6.16921 6.24298 6.53884 6.75864 7.09937 7.28849 7.78245 8.46627 9.25445 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.001784 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.465064 B =15688.895834 C =15957.698651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.065 3.935 4 C -0.236 4.236 5 C -0.051 4.051 6 C 0.513 3.487 7 O -0.584 6.584 8 N -0.614 5.614 9 C 0.122 3.878 10 C 0.049 3.951 11 N -0.529 5.529 12 C 0.091 3.909 13 H 0.043 0.957 14 C -0.117 4.117 15 C 0.181 3.819 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.977 3.023 22 H -0.283 1.283 23 H -0.270 1.270 24 H -0.295 1.295 25 C 0.147 3.853 26 C 0.035 3.965 27 C 0.117 3.883 28 C 0.049 3.951 29 N -0.341 5.341 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.198 0.802 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.024 0.976 43 H -0.001 1.001 44 H 0.248 0.752 45 H 0.017 0.983 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.125 0.875 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 -18.554 -8.451 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.082 4.082 4 C -0.248 4.248 5 C -0.091 4.091 6 C 0.303 3.697 7 O -0.464 6.464 8 N -0.348 5.348 9 C -0.001 4.001 10 C -0.080 4.080 11 N -0.255 5.255 12 C -0.017 4.017 13 H 0.060 0.940 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.096 0.904 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.805 3.195 22 H -0.209 1.209 23 H -0.195 1.195 24 H -0.221 1.221 25 C 0.021 3.979 26 C -0.094 4.094 27 C -0.006 4.006 28 C -0.136 4.136 29 N -0.163 5.163 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.215 0.785 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.017 0.983 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.143 0.857 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.795 -19.940 -7.904 29.187 hybrid contribution 0.748 2.078 0.189 2.217 sum -19.047 -17.862 -7.715 27.228 Atomic orbital electron populations 1.22152 0.72331 1.05572 1.04625 1.48740 1.07854 1.03481 1.56473 1.22786 0.90862 0.94345 1.00255 1.19708 0.94452 0.93550 1.17112 1.19987 0.96028 1.01152 0.91945 1.21364 0.78709 0.76872 0.92736 1.90677 1.54437 1.53120 1.48181 1.48336 1.28678 1.50055 1.07717 1.21548 1.00626 0.94133 0.83766 1.22412 0.94211 0.94932 0.96406 1.61964 1.43937 1.16344 1.03209 1.22338 0.95845 0.87640 0.95923 0.93957 1.22853 0.98690 0.98013 0.96041 1.21103 0.94961 0.92885 0.85561 1.44696 1.29041 1.54408 1.06795 1.19354 1.03917 1.09175 1.04856 0.90373 1.25747 1.03066 0.97732 0.99115 1.70145 1.40084 1.26390 1.22960 0.85130 0.79315 0.78184 0.76875 1.20930 1.19456 1.22102 1.21361 0.90393 0.92601 0.93517 1.22609 0.98765 0.97101 0.90893 1.22045 0.97056 0.91467 0.89984 1.24083 0.95369 0.95382 0.98806 1.77257 1.02604 1.09994 1.26480 0.89200 0.89566 0.87277 0.78505 0.85714 0.85608 0.90619 0.89963 0.89237 0.95091 0.90887 0.90267 0.95770 0.98257 0.94301 0.96550 0.94145 0.94316 0.88938 0.89861 0.85746 0.78984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.47 127.77 1.47 2.28 16 2 N -0.38 -6.81 4.01 -369.56 -1.48 -8.29 16 3 C 0.06 1.02 11.40 83.54 0.95 1.98 16 4 C -0.24 -4.09 4.59 -20.15 -0.09 -4.19 16 5 C -0.05 -0.62 4.55 29.10 0.13 -0.49 16 6 C 0.51 10.33 7.70 87.66 0.68 11.00 16 7 O -0.58 -17.23 15.49 -3.04 -0.05 -17.28 16 8 N -0.61 -11.37 3.01 -817.87 -2.46 -13.83 16 9 C 0.12 2.60 6.59 86.35 0.57 3.17 16 10 C 0.05 1.11 5.48 86.38 0.47 1.58 16 11 N -0.53 -13.36 4.46 -862.97 -3.85 -17.21 16 12 C 0.09 2.95 2.64 46.11 0.12 3.08 16 13 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 14 C -0.12 -4.20 5.45 31.99 0.17 -4.02 16 15 C 0.18 8.83 5.36 86.86 0.47 9.29 16 16 N -0.62 -31.86 3.39 -691.96 -2.35 -34.20 16 17 C -0.24 -13.62 10.21 84.03 0.86 -12.76 16 18 H 0.08 4.17 7.84 -2.91 -0.02 4.15 16 19 C -0.06 -3.57 5.39 84.86 0.46 -3.11 16 20 N -0.95 -57.07 10.92 21.65 0.24 -56.83 16 21 Si 0.98 45.37 29.56 68.60 2.03 47.40 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.15 5.81 5.70 86.73 0.49 6.31 16 26 C 0.03 0.67 5.43 86.39 0.47 1.14 16 27 C 0.12 1.62 6.51 86.36 0.56 2.18 16 28 C 0.05 0.98 11.96 85.24 1.02 2.00 16 29 N -0.34 -7.88 12.58 -57.02 -0.72 -8.60 16 30 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.12 0.86 7.66 -2.39 -0.02 0.84 16 35 H 0.13 0.93 8.00 -2.38 -0.02 0.91 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.93 7.07 -2.39 -0.02 1.92 16 38 H 0.09 2.02 6.85 -2.39 -0.02 2.00 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.46 7.93 -2.39 -0.02 2.44 16 42 H 0.02 1.32 7.33 -2.39 -0.02 1.30 16 43 H 0.00 -0.03 7.94 -2.39 -0.02 -0.05 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.04 1.56 7.60 -2.39 -0.02 1.55 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 48 H 0.09 1.85 6.68 -2.39 -0.02 1.83 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.12 0.83 6.02 -2.39 -0.01 0.82 16 51 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -80.32 401.94 1.07 -79.25 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.91 Total: 10.16 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 8.80 Total: 19.44 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -10.62 Total: -138.97 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.05 Total: -17.28 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -80.32 1.07 -79.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.601 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds