Wall clock time and date at job start Wed Apr 1 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40086 * 126.03754 * 2 1 4 4 C 1.30832 * 108.20513 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20603 * 359.77340 * 4 3 2 6 6 C 1.34953 * 126.03782 * 180.02562 * 2 1 3 7 7 C 1.50699 * 126.12434 * 359.94660 * 6 2 1 8 8 C 1.50700 * 109.46907 * 264.99402 * 7 6 2 9 9 O 1.21279 * 120.00266 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.47081 * 120.88300 * 180.02562 * 10 8 7 12 12 C 1.53234 * 108.52059 * 231.20500 * 11 10 8 13 13 N 1.46895 * 109.34290 * 306.16710 * 12 11 10 14 14 C 1.46903 * 111.00149 * 187.25030 * 13 12 11 15 15 H 1.08995 * 110.64225 * 298.31528 * 14 13 12 16 16 C 1.55154 * 110.71882 * 174.97808 * 14 13 12 17 17 C 1.54910 * 101.58031 * 206.13764 * 16 14 13 18 18 N 1.47426 * 104.83209 * 37.01037 * 17 16 14 19 19 C 1.36932 * 125.64638 * 155.89300 * 18 17 16 20 20 H 1.08001 * 119.99867 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00333 * 359.97290 * 19 18 17 22 22 N 1.31623 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47007 * 90.00170 * 23 21 19 25 25 H 1.48501 * 109.46993 * 210.00274 * 23 21 19 26 26 H 1.48499 * 109.47317 * 330.00050 * 23 21 19 27 27 C 1.47019 * 108.70209 * 335.87354 * 18 17 16 28 28 C 1.46908 * 111.26676 * 63.10905 * 13 12 11 29 29 C 1.47081 * 120.88167 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47455 * 269.97859 * 1 2 3 31 31 H 1.09002 * 109.47554 * 29.97826 * 1 2 3 32 32 H 1.09000 * 109.47433 * 149.97706 * 1 2 3 33 33 H 1.08001 * 125.89903 * 179.97438 * 4 3 2 34 34 H 1.08004 * 126.04512 * 180.23264 * 5 4 3 35 35 H 1.09000 * 109.47151 * 145.00280 * 7 6 2 36 36 H 1.08995 * 109.47190 * 24.99789 * 7 6 2 37 37 H 1.08998 * 109.62655 * 111.49505 * 11 10 8 38 38 H 1.08999 * 109.62739 * 350.91935 * 11 10 8 39 39 H 1.08998 * 109.49537 * 186.20526 * 12 11 10 40 40 H 1.09004 * 109.49485 * 66.13208 * 12 11 10 41 41 H 1.09002 * 111.00945 * 88.06571 * 16 14 13 42 42 H 1.08999 * 111.00353 * 324.21109 * 16 14 13 43 43 H 1.08998 * 110.36709 * 278.17139 * 17 16 14 44 44 H 1.09005 * 110.36466 * 155.84673 * 17 16 14 45 45 H 0.96997 * 120.00161 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.88389 * 120.48020 * 27 18 17 47 47 H 1.09004 * 109.87600 * 241.48978 * 27 18 17 48 48 H 1.09000 * 109.49706 * 56.85132 * 28 13 12 49 49 H 1.09000 * 109.49136 * 176.93769 * 28 13 12 50 50 H 1.08994 * 109.63092 * 248.50216 * 29 10 8 51 51 H 1.09000 * 109.62848 * 9.08777 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6665 0.0043 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 0.0000 8 6 1.7625 -3.0418 1.4155 9 8 2.0807 -2.3160 2.3335 10 7 1.3778 -4.3099 1.6613 11 6 1.3361 -4.8333 3.0351 12 6 2.1090 -6.1559 3.0757 13 7 1.5768 -7.0621 2.0494 14 6 2.1727 -8.3996 2.1678 15 1 3.2513 -8.3544 2.0179 16 6 1.5158 -9.3840 1.1644 17 6 1.7358 -10.7436 1.8734 18 7 1.5628 -10.4533 3.3084 19 6 1.2059 -11.3615 4.2690 20 1 1.1054 -11.0481 5.2977 21 6 0.9732 -12.6849 3.9208 22 7 1.0961 -13.0670 2.6673 23 14 0.4869 -13.9240 5.2315 24 1 -0.9924 -13.9566 5.3573 25 1 0.9809 -15.2706 4.8471 26 1 1.0858 -13.5297 6.5319 27 6 1.8376 -9.0272 3.5373 28 6 1.7754 -6.5150 0.7006 29 6 0.9884 -5.2070 0.5627 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 4.4053 1.3710 -0.0011 34 1 4.4211 -1.2963 0.0087 35 1 2.4869 -3.1296 -0.5899 36 1 0.7991 -2.5864 -0.4335 37 1 0.3010 -5.0049 3.3303 38 1 1.7995 -4.1174 3.7139 39 1 1.9960 -6.6132 4.0586 40 1 3.1647 -5.9664 2.8815 41 1 2.0259 -9.3586 0.2014 42 1 0.4531 -9.1716 1.0476 43 1 2.7425 -11.1139 1.6800 44 1 0.9933 -11.4692 1.5411 45 1 0.9332 -13.9916 2.4238 46 1 0.9576 -8.5436 3.9614 47 1 2.6840 -8.9170 4.2152 48 1 2.8357 -6.3204 0.5394 49 1 1.4204 -7.2327 -0.0390 50 1 -0.0801 -5.4145 0.6206 51 1 1.2219 -4.7381 -0.3932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046022350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:30 Heat of formation + Delta-G solvation = 96.247478 kcal Electronic energy + Delta-G solvation = -30794.267097 eV Core-core repulsion = 26731.886672 eV Total energy + Delta-G solvation = -4062.380425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59368 -40.30212 -38.62949 -36.70055 -34.36224 -33.75259 -32.73089 -31.95912 -31.32743 -29.29000 -28.57750 -27.39821 -26.99025 -25.97643 -24.19827 -23.61700 -21.93149 -21.39614 -20.31279 -20.04918 -19.60737 -19.03808 -17.67745 -17.08218 -16.88658 -16.08859 -15.88802 -15.60847 -15.46203 -14.93218 -14.71292 -14.62556 -14.50633 -14.25911 -13.97709 -13.81348 -13.44660 -13.21777 -13.03361 -12.91399 -12.72858 -12.45898 -12.44947 -12.22934 -11.88527 -11.70183 -11.63164 -11.38765 -11.34553 -10.96420 -10.89357 -10.82823 -10.28984 -10.23481 -10.14175 -10.06059 -9.84988 -9.59237 -9.50422 -8.95649 -8.74429 -8.66189 -8.20784 -6.84243 -5.66602 -3.07977 1.53974 2.21621 2.32399 2.54275 2.81183 3.39295 3.44268 3.46125 3.86936 4.04697 4.20421 4.24719 4.48576 4.49110 4.68370 4.75791 4.79762 4.88433 4.92644 4.96740 5.06782 5.08875 5.21172 5.28316 5.41079 5.41779 5.47558 5.49670 5.50806 5.56140 5.66711 5.70851 5.80816 5.86319 5.87364 5.93798 6.20498 6.30230 6.42052 6.50128 6.52441 6.61639 6.66243 6.70784 7.09586 7.14006 7.35144 7.45869 7.49237 7.61811 7.83634 7.86717 8.34818 9.20962 9.81912 10.46419 11.37481 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.001847 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.034496 B =15155.394980 C =15339.353951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 N -0.297 5.297 4 C 0.047 3.953 5 C -0.256 4.256 6 C 0.103 3.897 7 C -0.080 4.080 8 C 0.517 3.483 9 O -0.530 6.530 10 N -0.611 5.611 11 C 0.119 3.881 12 C 0.040 3.960 13 N -0.525 5.525 14 C 0.072 3.928 15 H 0.043 0.957 16 C -0.134 4.134 17 C 0.153 3.847 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.146 3.854 28 C 0.040 3.960 29 C 0.110 3.890 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.183 0.817 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.108 0.892 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.035 0.965 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 22.612 -10.336 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.150 5.150 3 N -0.118 5.118 4 C -0.138 4.138 5 C -0.286 4.286 6 C -0.025 4.025 7 C -0.121 4.121 8 C 0.304 3.696 9 O -0.407 6.407 10 N -0.345 5.345 11 C -0.004 4.004 12 C -0.089 4.089 13 N -0.251 5.251 14 C -0.036 4.036 15 H 0.061 0.939 16 C -0.172 4.172 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.020 3.980 28 C -0.089 4.089 29 C -0.013 4.013 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.200 0.800 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.126 0.874 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.100 0.900 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.986 23.755 -9.723 25.687 hybrid contribution 1.270 -1.414 0.524 1.972 sum 0.285 22.340 -9.199 24.162 Atomic orbital electron populations 1.21850 0.74595 1.04249 1.03609 1.48388 1.06404 1.03306 1.56865 1.77346 1.01913 1.07673 1.24876 1.23785 0.95203 0.94994 0.99856 1.21177 0.96085 0.95131 1.16194 1.20237 0.91444 0.88891 1.01967 1.20301 1.04498 0.91000 0.96301 1.20275 0.77207 0.81501 0.90664 1.90751 1.47787 1.56038 1.46078 1.48201 1.66361 1.11307 1.08655 1.21756 1.01555 0.94580 0.82485 1.22490 0.96365 0.92537 0.97495 1.62015 1.58477 1.02302 1.02259 1.22700 0.95489 0.86723 0.98690 0.93940 1.23089 1.00233 0.97595 0.96331 1.21928 1.00247 0.92357 0.82733 1.44426 1.80707 1.03015 1.04750 1.19070 1.38439 0.88547 0.88765 0.90507 1.24786 1.02227 0.97082 0.96670 1.69786 1.56014 1.16240 1.15159 0.86067 0.78210 0.80748 0.80442 1.21584 1.21677 1.20764 1.21224 0.97365 0.86666 0.92766 1.22453 0.98205 0.95737 0.92496 1.21963 1.00458 0.89775 0.89128 0.90617 0.89127 0.89704 0.79985 0.83694 0.86147 0.87742 0.90479 0.88853 0.88888 0.94673 0.92821 0.91094 0.97204 0.87422 0.93755 0.94735 0.96622 0.94638 0.88881 0.90008 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.27 59.84 0.67 1.32 16 2 N -0.37 -3.84 4.01 -63.89 -0.26 -4.09 16 3 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 4 C 0.05 0.48 12.02 -17.37 -0.21 0.28 16 5 C -0.26 -2.64 10.72 -40.01 -0.43 -3.07 16 6 C 0.10 1.03 5.42 -82.26 -0.45 0.58 16 7 C -0.08 -0.57 4.35 -29.04 -0.13 -0.70 16 8 C 0.52 5.50 7.70 -10.99 -0.08 5.41 16 9 O -0.53 -7.90 15.49 5.56 0.09 -7.81 16 10 N -0.61 -6.03 3.01 -172.45 -0.52 -6.55 16 11 C 0.12 1.32 6.60 -3.60 -0.02 1.30 16 12 C 0.04 0.49 5.45 -3.71 -0.02 0.47 16 13 N -0.53 -7.02 4.45 -224.13 -1.00 -8.02 16 14 C 0.07 1.20 2.65 -65.88 -0.17 1.02 16 15 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 16 C -0.13 -2.38 5.38 -24.58 -0.13 -2.51 16 17 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 18 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 19 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 23 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.15 2.99 5.70 -3.07 -0.02 2.97 16 28 C 0.04 0.41 5.47 -3.68 -0.02 0.39 16 29 C 0.11 0.85 6.51 -3.58 -0.02 0.83 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.33 6.98 -51.93 -0.36 -0.03 16 33 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.12 0.61 7.66 -51.93 -0.40 0.22 16 36 H 0.10 0.48 6.81 -51.93 -0.35 0.12 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.11 7.06 -51.93 -0.37 0.75 16 39 H 0.09 1.20 6.78 -51.93 -0.35 0.85 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.72 7.70 -51.93 -0.40 0.32 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.92 6.80 -51.93 -0.35 0.57 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.40 6.02 -51.93 -0.31 0.08 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -35.31 398.06 -9.88 -45.18 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.23 Total: -1.79 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.30 Total: 5.21 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -1.41 Total: -63.66 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.31 -9.88 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046022350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.429 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds