Wall clock time and date at job start Wed Apr 1 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40086 * 126.03754 * 2 1 4 4 C 1.30832 * 108.20513 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20603 * 359.77340 * 4 3 2 6 6 C 1.34953 * 126.03782 * 180.02562 * 2 1 3 7 7 C 1.50699 * 126.12434 * 359.94660 * 6 2 1 8 8 C 1.50700 * 109.46907 * 264.99402 * 7 6 2 9 9 O 1.21279 * 120.00266 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.47081 * 120.88300 * 180.02562 * 10 8 7 12 12 C 1.53234 * 108.52059 * 231.20500 * 11 10 8 13 13 N 1.46895 * 109.34290 * 306.16710 * 12 11 10 14 14 C 1.46903 * 111.00149 * 187.25030 * 13 12 11 15 15 H 1.08995 * 110.64225 * 298.31528 * 14 13 12 16 16 C 1.55154 * 110.71882 * 174.97808 * 14 13 12 17 17 C 1.54910 * 101.58031 * 206.13764 * 16 14 13 18 18 N 1.47426 * 104.83209 * 37.01037 * 17 16 14 19 19 C 1.36932 * 125.64638 * 155.89300 * 18 17 16 20 20 H 1.08001 * 119.99867 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00333 * 359.97290 * 19 18 17 22 22 N 1.31623 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47007 * 90.00170 * 23 21 19 25 25 H 1.48501 * 109.46993 * 210.00274 * 23 21 19 26 26 H 1.48499 * 109.47317 * 330.00050 * 23 21 19 27 27 C 1.47019 * 108.70209 * 335.87354 * 18 17 16 28 28 C 1.46908 * 111.26676 * 63.10905 * 13 12 11 29 29 C 1.47081 * 120.88167 * 0.02562 * 10 8 7 30 30 H 1.09001 * 109.47455 * 269.97859 * 1 2 3 31 31 H 1.09002 * 109.47554 * 29.97826 * 1 2 3 32 32 H 1.09000 * 109.47433 * 149.97706 * 1 2 3 33 33 H 1.08001 * 125.89903 * 179.97438 * 4 3 2 34 34 H 1.08004 * 126.04512 * 180.23264 * 5 4 3 35 35 H 1.09000 * 109.47151 * 145.00280 * 7 6 2 36 36 H 1.08995 * 109.47190 * 24.99789 * 7 6 2 37 37 H 1.08998 * 109.62655 * 111.49505 * 11 10 8 38 38 H 1.08999 * 109.62739 * 350.91935 * 11 10 8 39 39 H 1.08998 * 109.49537 * 186.20526 * 12 11 10 40 40 H 1.09004 * 109.49485 * 66.13208 * 12 11 10 41 41 H 1.09002 * 111.00945 * 88.06571 * 16 14 13 42 42 H 1.08999 * 111.00353 * 324.21109 * 16 14 13 43 43 H 1.08998 * 110.36709 * 278.17139 * 17 16 14 44 44 H 1.09005 * 110.36466 * 155.84673 * 17 16 14 45 45 H 0.96997 * 120.00161 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.88389 * 120.48020 * 27 18 17 47 47 H 1.09004 * 109.87600 * 241.48978 * 27 18 17 48 48 H 1.09000 * 109.49706 * 56.85132 * 28 13 12 49 49 H 1.09000 * 109.49136 * 176.93769 * 28 13 12 50 50 H 1.08994 * 109.63092 * 248.50216 * 29 10 8 51 51 H 1.09000 * 109.62848 * 9.08777 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6665 0.0043 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 0.0000 8 6 1.7625 -3.0418 1.4155 9 8 2.0807 -2.3160 2.3335 10 7 1.3778 -4.3099 1.6613 11 6 1.3361 -4.8333 3.0351 12 6 2.1090 -6.1559 3.0757 13 7 1.5768 -7.0621 2.0494 14 6 2.1727 -8.3996 2.1678 15 1 3.2513 -8.3544 2.0179 16 6 1.5158 -9.3840 1.1644 17 6 1.7358 -10.7436 1.8734 18 7 1.5628 -10.4533 3.3084 19 6 1.2059 -11.3615 4.2690 20 1 1.1054 -11.0481 5.2977 21 6 0.9732 -12.6849 3.9208 22 7 1.0961 -13.0670 2.6673 23 14 0.4869 -13.9240 5.2315 24 1 -0.9924 -13.9566 5.3573 25 1 0.9809 -15.2706 4.8471 26 1 1.0858 -13.5297 6.5319 27 6 1.8376 -9.0272 3.5373 28 6 1.7754 -6.5150 0.7006 29 6 0.9884 -5.2070 0.5627 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 4.4053 1.3710 -0.0011 34 1 4.4211 -1.2963 0.0087 35 1 2.4869 -3.1296 -0.5899 36 1 0.7991 -2.5864 -0.4335 37 1 0.3010 -5.0049 3.3303 38 1 1.7995 -4.1174 3.7139 39 1 1.9960 -6.6132 4.0586 40 1 3.1647 -5.9664 2.8815 41 1 2.0259 -9.3586 0.2014 42 1 0.4531 -9.1716 1.0476 43 1 2.7425 -11.1139 1.6800 44 1 0.9933 -11.4692 1.5411 45 1 0.9332 -13.9916 2.4238 46 1 0.9576 -8.5436 3.9614 47 1 2.6840 -8.9170 4.2152 48 1 2.8357 -6.3204 0.5394 49 1 1.4204 -7.2327 -0.0390 50 1 -0.0801 -5.4145 0.6206 51 1 1.2219 -4.7381 -0.3932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046022350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:29 Heat of formation + Delta-G solvation = 71.733708 kcal Electronic energy + Delta-G solvation = -30795.330093 eV Core-core repulsion = 26731.886672 eV Total energy + Delta-G solvation = -4063.443422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.29193 -41.16386 -39.83509 -38.02812 -35.61171 -34.43998 -33.86384 -33.27919 -32.17786 -30.95840 -29.71113 -28.45291 -27.58301 -27.30667 -25.81059 -24.62639 -22.82726 -22.10525 -21.82775 -21.24778 -20.78571 -19.81626 -18.92854 -18.42010 -17.76641 -17.15729 -16.77186 -16.66917 -16.43618 -16.15368 -15.93690 -15.84754 -15.42955 -15.18159 -14.89472 -14.76507 -14.59012 -14.30707 -14.17475 -13.81758 -13.54414 -13.44431 -13.39401 -13.25727 -13.22599 -12.91714 -12.82334 -12.70752 -12.59763 -12.47281 -12.24223 -11.98932 -11.81342 -11.70306 -11.62013 -11.53766 -11.37576 -11.00030 -10.73020 -10.22447 -9.82634 -9.45508 -9.24467 -8.86877 -7.76333 -5.20335 0.82932 1.47489 1.49077 1.54393 1.57577 1.64003 1.81737 2.07695 2.49356 2.83770 3.33850 3.41681 3.55771 3.71486 3.72559 3.78671 3.97229 4.01705 4.05029 4.15436 4.25389 4.28602 4.31787 4.36297 4.38094 4.45969 4.48227 4.55666 4.65649 4.69664 4.76126 4.76523 4.78518 4.81998 4.89680 4.93351 5.05001 5.06900 5.13525 5.17125 5.19379 5.41362 5.47711 5.68276 5.73554 5.82724 6.05515 6.10082 6.15177 6.33691 6.40304 6.74149 7.09887 7.12796 7.79985 8.43226 9.25384 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.001847 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.034496 B =15155.394980 C =15339.353951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.375 5.375 3 N -0.336 5.336 4 C 0.037 3.963 5 C -0.278 4.278 6 C 0.097 3.903 7 C -0.072 4.072 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.125 3.875 12 C 0.046 3.954 13 N -0.530 5.530 14 C 0.091 3.909 15 H 0.044 0.956 16 C -0.112 4.112 17 C 0.152 3.848 18 N -0.626 5.626 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.067 4.067 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.144 3.856 28 C 0.035 3.965 29 C 0.112 3.888 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.204 0.796 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.086 0.914 42 H 0.072 0.928 43 H -0.015 1.015 44 H 0.075 0.925 45 H 0.247 0.753 46 H 0.032 0.968 47 H 0.011 0.989 48 H 0.040 0.960 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 23.430 -11.997 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.158 5.158 3 N -0.158 5.158 4 C -0.147 4.147 5 C -0.307 4.307 6 C -0.032 4.032 7 C -0.113 4.113 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.342 5.342 11 C 0.002 3.998 12 C -0.083 4.083 13 N -0.255 5.255 14 C -0.018 4.018 15 H 0.062 0.938 16 C -0.150 4.150 17 C 0.026 3.974 18 N -0.352 5.352 19 C -0.367 4.367 20 H 0.095 0.905 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.198 1.198 27 C 0.018 3.982 28 C -0.093 4.093 29 C -0.009 4.009 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.221 0.779 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.003 0.997 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.058 0.942 49 H 0.121 0.879 50 H 0.107 0.893 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.651 24.598 -11.406 27.164 hybrid contribution 1.485 -1.650 1.078 2.467 sum -0.166 22.948 -10.328 25.166 Atomic orbital electron populations 1.22148 0.72894 1.06303 1.03829 1.48711 1.07552 1.03051 1.56446 1.77271 1.02855 1.09267 1.26452 1.24253 0.95539 0.95748 0.99148 1.21505 0.97013 0.95347 1.16870 1.20697 0.91459 0.90059 1.00985 1.20431 1.07293 0.89356 0.94198 1.20833 0.75897 0.81081 0.91572 1.90742 1.50014 1.57338 1.47942 1.48267 1.65837 1.11535 1.08535 1.21551 1.01176 0.93454 0.83616 1.22411 0.96341 0.92808 0.96747 1.61962 1.58123 1.01010 1.04399 1.22363 0.95541 0.88310 0.95561 0.93796 1.22854 1.00899 0.94009 0.97283 1.21753 0.97663 0.95074 0.82865 1.44748 1.80633 1.04675 1.05154 1.19415 1.38230 0.89520 0.89527 0.90488 1.25609 1.02743 0.98844 0.98734 1.70036 1.56851 1.16120 1.16695 0.85066 0.77820 0.78032 0.78326 1.21117 1.21947 1.19804 1.21343 0.96916 0.84603 0.95297 1.22636 0.99114 0.97141 0.90413 1.22173 1.00440 0.88281 0.90054 0.91252 0.88400 0.86458 0.77901 0.82654 0.83159 0.84209 0.90321 0.90057 0.90155 0.95011 0.89578 0.90906 0.99710 0.90732 0.94299 0.94972 0.97074 0.94209 0.87881 0.89258 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.27 127.77 1.44 2.42 16 2 N -0.37 -7.25 4.01 -356.03 -1.43 -8.68 16 3 N -0.34 -7.96 12.58 -57.03 -0.72 -8.67 16 4 C 0.04 0.75 12.02 85.24 1.02 1.78 16 5 C -0.28 -5.34 10.72 21.99 0.24 -5.11 16 6 C 0.10 1.71 5.42 41.40 0.22 1.94 16 7 C -0.07 -0.73 4.35 29.10 0.13 -0.61 16 8 C 0.52 9.55 7.70 87.66 0.68 10.23 16 9 O -0.58 -16.72 15.49 -3.03 -0.05 -16.76 16 10 N -0.61 -10.09 3.01 -817.89 -2.46 -12.55 16 11 C 0.13 2.61 6.60 86.35 0.57 3.18 16 12 C 0.05 1.07 5.45 86.38 0.47 1.54 16 13 N -0.53 -12.87 4.45 -863.02 -3.84 -16.71 16 14 C 0.09 2.88 2.65 46.10 0.12 3.00 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C -0.11 -3.78 5.38 31.99 0.17 -3.61 16 17 C 0.15 7.28 5.89 86.86 0.51 7.79 16 18 N -0.63 -32.14 3.39 -691.99 -2.35 -34.49 16 19 C -0.24 -13.38 10.27 84.03 0.86 -12.52 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 22 N -0.95 -55.81 10.09 21.65 0.22 -55.60 16 23 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 C 0.14 5.88 5.70 86.73 0.49 6.37 16 28 C 0.04 0.57 5.47 86.39 0.47 1.05 16 29 C 0.11 1.20 6.51 86.36 0.56 1.76 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.46 6.98 -2.39 -0.02 0.44 16 33 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.15 0.68 7.66 -2.39 -0.02 0.67 16 36 H 0.14 0.45 6.81 -2.39 -0.02 0.43 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.92 7.06 -2.39 -0.02 1.90 16 39 H 0.08 2.06 6.78 -2.39 -0.02 2.05 16 40 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 2.37 7.93 -2.39 -0.02 2.35 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.07 4.09 5.87 -2.38 -0.01 4.07 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.03 1.33 7.70 -2.39 -0.02 1.31 16 47 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 48 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 1.54 6.80 -2.39 -0.02 1.52 16 50 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.13 0.33 6.02 -2.39 -0.01 0.32 16 Total: -1.00 -80.60 398.06 0.75 -79.85 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.92 Total: 10.18 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 8.43 Total: 15.89 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -10.58 Total: -136.70 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -80.60 0.75 -79.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046022350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.586 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds