Wall clock time and date at job start Wed Apr 1 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.04234 * 2 1 4 4 C 1.35311 * 107.74864 * 179.74731 * 3 2 1 5 5 C 1.39870 * 107.92129 * 0.39826 * 4 3 2 6 6 C 1.50700 * 125.90011 * 179.86353 * 5 4 3 7 7 C 1.50705 * 109.47065 * 124.71048 * 6 5 4 8 8 O 1.21280 * 120.00246 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00085 * 180.02562 * 7 6 5 10 10 C 1.47084 * 120.88338 * 179.97438 * 9 7 6 11 11 C 1.53231 * 108.52125 * 231.16343 * 10 9 7 12 12 N 1.46897 * 109.34282 * 306.16801 * 11 10 9 13 13 C 1.46899 * 111.00299 * 187.25155 * 12 11 10 14 14 H 1.09004 * 110.88975 * 297.78215 * 13 12 11 15 15 C 1.55156 * 111.00086 * 61.70215 * 13 12 11 16 16 C 1.54331 * 102.94145 * 153.57517 * 15 13 12 17 17 N 1.47017 * 107.27127 * 337.80772 * 16 15 13 18 18 C 1.36932 * 125.64795 * 178.97189 * 17 16 15 19 19 H 1.07997 * 120.00438 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99993 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 89.99619 * 22 20 18 24 24 H 1.48504 * 109.47296 * 209.99676 * 22 20 18 25 25 H 1.48501 * 109.47151 * 329.99676 * 22 20 18 26 26 C 1.47431 * 108.70386 * 358.94193 * 17 16 15 27 27 C 1.46906 * 111.26788 * 63.10902 * 12 11 10 28 28 C 1.47083 * 120.87999 * 359.97438 * 9 7 6 29 29 N 1.30840 * 108.19843 * 359.59511 * 5 4 3 30 30 H 1.09003 * 109.47014 * 270.02852 * 1 2 3 31 31 H 1.09007 * 109.47020 * 30.02749 * 1 2 3 32 32 H 1.09004 * 109.47148 * 150.02183 * 1 2 3 33 33 H 1.07999 * 126.12426 * 359.97438 * 3 2 1 34 34 H 1.08001 * 126.04212 * 180.26857 * 4 3 2 35 35 H 1.09000 * 109.47373 * 4.71501 * 6 5 4 36 36 H 1.08996 * 109.47149 * 244.70829 * 6 5 4 37 37 H 1.08998 * 109.62267 * 111.45053 * 10 9 7 38 38 H 1.08999 * 109.78414 * 350.96993 * 10 9 7 39 39 H 1.08998 * 109.49244 * 186.21159 * 11 10 9 40 40 H 1.08997 * 109.49785 * 66.13162 * 11 10 9 41 41 H 1.08999 * 110.71995 * 35.21639 * 15 13 12 42 42 H 1.09000 * 110.72337 * 271.94203 * 15 13 12 43 43 H 1.09001 * 109.88166 * 218.38640 * 16 15 13 44 44 H 1.09006 * 109.87817 * 97.22896 * 16 15 13 45 45 H 0.96994 * 120.00290 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.36566 * 142.96624 * 26 17 16 47 47 H 1.08996 * 110.36287 * 265.18015 * 26 17 16 48 48 H 1.09002 * 109.49240 * 56.85241 * 27 12 11 49 49 H 1.09001 * 109.49431 * 176.93586 * 27 12 11 50 50 H 1.08997 * 109.63219 * 248.54317 * 28 9 7 51 51 H 1.08995 * 109.62695 * 9.13451 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 3.5346 -0.7322 0.0000 6 6 4.7496 -1.6238 0.0005 7 6 4.6720 -2.5779 1.1645 8 8 3.7233 -2.5383 1.9190 9 7 5.6569 -3.4754 1.3669 10 6 5.6012 -4.4153 2.4969 11 6 6.9273 -4.3372 3.2607 12 7 8.0403 -4.5540 2.3268 13 6 9.3175 -4.6580 3.0449 14 1 9.5418 -3.7324 3.5752 15 6 9.3129 -5.8687 4.0153 16 6 10.8097 -6.2280 4.1268 17 7 11.4781 -5.6885 2.9336 18 6 12.8170 -5.7767 2.6605 19 1 13.2124 -5.3464 1.7523 20 6 13.6662 -6.4193 3.5510 21 7 13.1845 -6.9434 4.6581 22 14 15.4926 -6.5403 3.1781 23 1 16.1931 -5.3609 3.7468 24 1 16.0403 -7.7808 3.7834 25 1 15.6963 -6.5754 1.7075 26 6 10.4680 -5.0375 2.0795 27 6 8.0940 -3.4975 1.3075 28 6 6.8159 -3.5409 0.4638 29 7 2.2891 -1.1328 0.0001 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9282 2.1193 -0.0004 34 1 4.4211 1.2961 0.0113 35 1 5.6482 -1.0134 0.0905 36 1 4.7859 -2.1889 -0.9307 37 1 5.4529 -5.4284 2.1233 38 1 4.7798 -4.1459 3.1608 39 1 6.9471 -5.1047 4.0345 40 1 7.0248 -3.3539 3.7208 41 1 8.7474 -6.6993 3.5929 42 1 8.9116 -5.5823 4.9874 43 1 10.9294 -7.3108 4.1612 44 1 11.2331 -5.7775 5.0246 45 1 13.7779 -7.3921 5.2805 46 1 10.8836 -4.1436 1.6146 47 1 10.1125 -5.7305 1.3170 48 1 8.1752 -2.5258 1.7947 49 1 8.9599 -3.6560 0.6646 50 1 6.7846 -4.4699 -0.1054 51 1 6.7979 -2.6900 -0.2172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046026909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:35 Heat of formation + Delta-G solvation = 95.169774 kcal Electronic energy + Delta-G solvation = -30455.267252 eV Core-core repulsion = 26392.840095 eV Total energy + Delta-G solvation = -4062.427158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45776 -40.17106 -38.49925 -36.60834 -34.24550 -34.12012 -32.03340 -31.60391 -30.61247 -29.94440 -29.10401 -27.90221 -26.39401 -25.54739 -24.18764 -23.46869 -21.80228 -21.40756 -20.26079 -19.89247 -19.63098 -18.78341 -17.42966 -17.17156 -16.83793 -15.98801 -15.78822 -15.52209 -15.46851 -14.82381 -14.56491 -14.52604 -14.40659 -14.19183 -13.93654 -13.66407 -13.31992 -13.08353 -12.85564 -12.83991 -12.70797 -12.43323 -12.27966 -12.16266 -12.00652 -11.78885 -11.53713 -11.28826 -11.17614 -10.86939 -10.79733 -10.79244 -10.12986 -10.07886 -9.99714 -9.91427 -9.86706 -9.64736 -9.44432 -8.81063 -8.77527 -8.57944 -8.11843 -6.80688 -5.69154 -3.02685 1.66740 2.25375 2.45025 2.57657 2.96522 3.41090 3.45884 3.48111 3.96199 4.13403 4.36630 4.49268 4.52880 4.61452 4.79830 4.84265 4.90110 4.92872 5.04645 5.08221 5.12499 5.17912 5.33087 5.35843 5.41145 5.48253 5.53971 5.54836 5.65342 5.68810 5.74654 5.77066 5.84247 5.86761 5.90140 6.03633 6.30947 6.34397 6.41081 6.51010 6.54668 6.67172 6.75450 6.76977 7.21122 7.27370 7.42544 7.51789 7.58126 7.66670 7.85045 8.10749 8.28227 9.24022 9.84545 10.50709 11.42520 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.001782 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.587159 B =15709.132529 C =16247.287466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.049 3.951 4 C -0.266 4.266 5 C 0.082 3.918 6 C -0.058 4.058 7 C 0.518 3.482 8 O -0.529 6.529 9 N -0.614 5.614 10 C 0.119 3.881 11 C 0.043 3.957 12 N -0.526 5.526 13 C 0.068 3.932 14 H 0.046 0.954 15 C -0.134 4.134 16 C 0.179 3.821 17 N -0.606 5.606 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.149 3.851 27 C 0.039 3.961 28 C 0.111 3.889 29 N -0.263 5.263 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.036 0.964 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.077 14.986 -10.535 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.097 4.097 4 C -0.295 4.295 5 C -0.085 4.085 6 C -0.100 4.100 7 C 0.305 3.695 8 O -0.404 6.404 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.086 4.086 12 N -0.251 5.251 13 C -0.041 4.041 14 H 0.064 0.936 15 C -0.173 4.173 16 C 0.054 3.946 17 N -0.332 5.332 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.022 3.978 27 C -0.090 4.090 28 C -0.012 4.012 29 N -0.086 5.086 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.098 0.902 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.452 13.480 -10.266 29.749 hybrid contribution 1.726 1.489 0.357 2.307 sum -22.726 14.970 -9.910 28.962 Atomic orbital electron populations 1.21835 0.74328 1.04300 1.03420 1.48540 1.06646 1.03884 1.56958 1.22487 0.91141 0.93456 1.02589 1.21352 0.97186 0.94038 1.16923 1.21539 0.92716 0.93385 1.00848 1.20061 0.95024 0.96080 0.98817 1.20343 0.82047 0.80791 0.86302 1.90725 1.32261 1.70389 1.47071 1.48181 1.21781 1.35436 1.29498 1.21691 0.97634 0.92885 0.88103 1.22449 0.90485 1.00677 0.95017 1.61972 1.03738 1.44689 1.14724 1.22881 0.87999 0.97673 0.95526 0.93606 1.22934 1.00542 0.96789 0.97021 1.21132 0.85088 0.98147 0.90224 1.44411 1.03129 1.65096 1.20600 1.19046 0.81474 1.30849 1.04188 0.90458 1.24804 0.98186 1.00597 0.96925 1.69962 1.33447 1.42118 1.11423 0.86120 0.85004 0.77134 0.77504 1.21677 1.21681 1.20696 1.21465 0.88235 0.95351 0.92746 1.22477 0.97895 0.93377 0.95276 1.21925 0.84273 1.03001 0.92011 1.77428 1.01201 1.07194 1.22735 0.90770 0.89564 0.89327 0.81017 0.83462 0.86941 0.87224 0.90729 0.89027 0.89186 0.94790 0.91441 0.92692 0.93823 0.93745 0.93780 0.94916 0.95273 0.94604 0.88875 0.90150 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.47 59.84 0.69 1.25 16 2 N -0.38 -3.75 4.01 -68.16 -0.27 -4.02 16 3 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 4 C -0.27 -2.50 10.72 -40.01 -0.43 -2.93 16 5 C 0.08 0.95 6.02 -82.40 -0.50 0.46 16 6 C -0.06 -0.54 4.64 -29.03 -0.13 -0.68 16 7 C 0.52 6.55 7.70 -10.98 -0.08 6.46 16 8 O -0.53 -8.85 15.02 5.56 0.08 -8.77 16 9 N -0.61 -7.03 3.01 -172.48 -0.52 -7.55 16 10 C 0.12 1.45 6.59 -3.60 -0.02 1.42 16 11 C 0.04 0.55 5.48 -3.71 -0.02 0.53 16 12 N -0.53 -7.41 4.53 -223.80 -1.01 -8.42 16 13 C 0.07 1.18 2.71 -65.57 -0.18 1.00 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.13 -2.51 5.32 -24.89 -0.13 -2.64 16 16 C 0.18 4.36 5.37 -3.06 -0.02 4.35 16 17 N -0.61 -15.45 3.39 -170.07 -0.58 -16.03 16 18 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.17 10.31 55.49 0.57 -26.59 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.02 5.66 -2.53 -0.01 3.01 16 27 C 0.04 0.45 5.48 -3.71 -0.02 0.43 16 28 C 0.11 1.03 6.50 -3.62 -0.02 1.01 16 29 N -0.26 -3.50 11.92 33.67 0.40 -3.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.11 0.74 7.64 -51.93 -0.40 0.35 16 36 H 0.11 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.18 7.07 -51.93 -0.37 0.82 16 39 H 0.09 1.15 6.86 -51.93 -0.36 0.79 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 43 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 44 H 0.04 1.20 7.38 -51.93 -0.38 0.81 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.64 7.85 -51.93 -0.41 0.23 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 1.07 6.80 -51.93 -0.35 0.72 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.09 0.55 6.02 -51.93 -0.31 0.23 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -36.75 400.73 -10.06 -46.81 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.41 Total: -2.45 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.34 Total: 7.03 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.41 Total: -65.72 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.75 -10.06 -46.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046026909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.978 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds