Wall clock time and date at job start Wed Apr 1 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.04234 * 2 1 4 4 C 1.35311 * 107.74864 * 179.74731 * 3 2 1 5 5 C 1.39870 * 107.92129 * 0.39826 * 4 3 2 6 6 C 1.50700 * 125.90011 * 179.86353 * 5 4 3 7 7 C 1.50705 * 109.47065 * 124.71048 * 6 5 4 8 8 O 1.21280 * 120.00246 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00085 * 180.02562 * 7 6 5 10 10 C 1.47084 * 120.88338 * 179.97438 * 9 7 6 11 11 C 1.53231 * 108.52125 * 231.16343 * 10 9 7 12 12 N 1.46897 * 109.34282 * 306.16801 * 11 10 9 13 13 C 1.46899 * 111.00299 * 187.25155 * 12 11 10 14 14 H 1.09004 * 110.88975 * 297.78215 * 13 12 11 15 15 C 1.55156 * 111.00086 * 61.70215 * 13 12 11 16 16 C 1.54331 * 102.94145 * 153.57517 * 15 13 12 17 17 N 1.47017 * 107.27127 * 337.80772 * 16 15 13 18 18 C 1.36932 * 125.64795 * 178.97189 * 17 16 15 19 19 H 1.07997 * 120.00438 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99993 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 89.99619 * 22 20 18 24 24 H 1.48504 * 109.47296 * 209.99676 * 22 20 18 25 25 H 1.48501 * 109.47151 * 329.99676 * 22 20 18 26 26 C 1.47431 * 108.70386 * 358.94193 * 17 16 15 27 27 C 1.46906 * 111.26788 * 63.10902 * 12 11 10 28 28 C 1.47083 * 120.87999 * 359.97438 * 9 7 6 29 29 N 1.30840 * 108.19843 * 359.59511 * 5 4 3 30 30 H 1.09003 * 109.47014 * 270.02852 * 1 2 3 31 31 H 1.09007 * 109.47020 * 30.02749 * 1 2 3 32 32 H 1.09004 * 109.47148 * 150.02183 * 1 2 3 33 33 H 1.07999 * 126.12426 * 359.97438 * 3 2 1 34 34 H 1.08001 * 126.04212 * 180.26857 * 4 3 2 35 35 H 1.09000 * 109.47373 * 4.71501 * 6 5 4 36 36 H 1.08996 * 109.47149 * 244.70829 * 6 5 4 37 37 H 1.08998 * 109.62267 * 111.45053 * 10 9 7 38 38 H 1.08999 * 109.78414 * 350.96993 * 10 9 7 39 39 H 1.08998 * 109.49244 * 186.21159 * 11 10 9 40 40 H 1.08997 * 109.49785 * 66.13162 * 11 10 9 41 41 H 1.08999 * 110.71995 * 35.21639 * 15 13 12 42 42 H 1.09000 * 110.72337 * 271.94203 * 15 13 12 43 43 H 1.09001 * 109.88166 * 218.38640 * 16 15 13 44 44 H 1.09006 * 109.87817 * 97.22896 * 16 15 13 45 45 H 0.96994 * 120.00290 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.36566 * 142.96624 * 26 17 16 47 47 H 1.08996 * 110.36287 * 265.18015 * 26 17 16 48 48 H 1.09002 * 109.49240 * 56.85241 * 27 12 11 49 49 H 1.09001 * 109.49431 * 176.93586 * 27 12 11 50 50 H 1.08997 * 109.63219 * 248.54317 * 28 9 7 51 51 H 1.08995 * 109.62695 * 9.13451 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 3.5346 -0.7322 0.0000 6 6 4.7496 -1.6238 0.0005 7 6 4.6720 -2.5779 1.1645 8 8 3.7233 -2.5383 1.9190 9 7 5.6569 -3.4754 1.3669 10 6 5.6012 -4.4153 2.4969 11 6 6.9273 -4.3372 3.2607 12 7 8.0403 -4.5540 2.3268 13 6 9.3175 -4.6580 3.0449 14 1 9.5418 -3.7324 3.5752 15 6 9.3129 -5.8687 4.0153 16 6 10.8097 -6.2280 4.1268 17 7 11.4781 -5.6885 2.9336 18 6 12.8170 -5.7767 2.6605 19 1 13.2124 -5.3464 1.7523 20 6 13.6662 -6.4193 3.5510 21 7 13.1845 -6.9434 4.6581 22 14 15.4926 -6.5403 3.1781 23 1 16.1931 -5.3609 3.7468 24 1 16.0403 -7.7808 3.7834 25 1 15.6963 -6.5754 1.7075 26 6 10.4680 -5.0375 2.0795 27 6 8.0940 -3.4975 1.3075 28 6 6.8159 -3.5409 0.4638 29 7 2.2891 -1.1328 0.0001 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9282 2.1193 -0.0004 34 1 4.4211 1.2961 0.0113 35 1 5.6482 -1.0134 0.0905 36 1 4.7859 -2.1889 -0.9307 37 1 5.4529 -5.4284 2.1233 38 1 4.7798 -4.1459 3.1608 39 1 6.9471 -5.1047 4.0345 40 1 7.0248 -3.3539 3.7208 41 1 8.7474 -6.6993 3.5929 42 1 8.9116 -5.5823 4.9874 43 1 10.9294 -7.3108 4.1612 44 1 11.2331 -5.7775 5.0246 45 1 13.7779 -7.3921 5.2805 46 1 10.8836 -4.1436 1.6146 47 1 10.1125 -5.7305 1.3170 48 1 8.1752 -2.5258 1.7947 49 1 8.9599 -3.6560 0.6646 50 1 6.7846 -4.4699 -0.1054 51 1 6.7979 -2.6900 -0.2172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046026909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:34 Heat of formation + Delta-G solvation = 69.359101 kcal Electronic energy + Delta-G solvation = -30456.386487 eV Core-core repulsion = 26392.840095 eV Total energy + Delta-G solvation = -4063.546393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.13128 -41.13922 -39.80241 -38.01885 -35.56184 -34.81109 -33.81610 -32.52853 -31.43900 -30.99396 -30.45351 -29.31931 -27.54984 -26.51243 -25.81380 -24.57867 -22.78991 -22.02342 -21.74774 -21.31063 -20.81559 -19.66019 -18.89152 -18.27036 -17.80756 -17.09255 -16.77506 -16.67546 -16.40083 -16.19492 -15.92947 -15.84813 -15.45229 -15.04993 -14.80416 -14.62973 -14.45173 -14.21339 -14.00458 -13.86898 -13.74266 -13.49648 -13.43266 -13.27442 -13.06780 -12.90200 -12.84844 -12.73445 -12.51850 -12.36931 -12.22142 -11.98090 -11.78271 -11.66077 -11.56414 -11.49860 -11.45685 -10.83089 -10.68599 -10.16843 -9.78405 -9.43547 -9.24535 -8.87552 -7.82571 -5.18353 1.02031 1.47740 1.49781 1.58480 1.64660 1.70217 1.76895 2.14092 2.50154 2.83847 3.36609 3.49489 3.64761 3.68235 3.85360 3.92618 3.97273 4.09058 4.11624 4.19098 4.28378 4.29698 4.35720 4.39466 4.42852 4.46547 4.52582 4.56882 4.67167 4.68341 4.76323 4.79110 4.84714 4.90221 4.93623 4.94599 5.00447 5.05808 5.13032 5.16526 5.24395 5.47333 5.48359 5.67233 5.72176 5.77214 6.05400 6.13203 6.23426 6.23509 6.44723 6.83752 7.12112 7.19349 7.79905 8.44598 9.28027 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.001782 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.587159 B =15709.132529 C =16247.287466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.387 5.387 3 C 0.054 3.946 4 C -0.285 4.285 5 C 0.064 3.936 6 C -0.054 4.054 7 C 0.515 3.485 8 O -0.578 6.578 9 N -0.613 5.613 10 C 0.124 3.876 11 C 0.049 3.951 12 N -0.527 5.527 13 C 0.088 3.912 14 H 0.039 0.961 15 C -0.118 4.118 16 C 0.187 3.813 17 N -0.628 5.628 18 C -0.240 4.240 19 H 0.086 0.914 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.149 3.851 27 C 0.036 3.964 28 C 0.115 3.885 29 N -0.321 5.321 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.213 0.787 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.006 0.994 44 H 0.009 0.991 45 H 0.246 0.754 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.037 0.963 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.634 17.143 -12.703 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.092 4.092 4 C -0.314 4.314 5 C -0.103 4.103 6 C -0.095 4.095 7 C 0.304 3.696 8 O -0.457 6.457 9 N -0.347 5.347 10 C 0.001 3.999 11 C -0.080 4.080 12 N -0.252 5.252 13 C -0.021 4.021 14 H 0.057 0.943 15 C -0.157 4.157 16 C 0.061 3.939 17 N -0.355 5.355 18 C -0.369 4.369 19 H 0.104 0.896 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.024 3.976 27 C -0.093 4.093 28 C -0.007 4.007 29 N -0.144 5.144 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.024 0.976 44 H 0.027 0.973 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.021 15.651 -12.486 32.045 hybrid contribution 1.820 0.860 1.004 2.249 sum -23.202 16.511 -11.482 30.704 Atomic orbital electron populations 1.22129 0.72524 1.05870 1.04057 1.48892 1.07891 1.03655 1.56550 1.23191 0.90796 0.94713 1.00515 1.21738 0.98633 0.93499 1.17519 1.21997 0.92845 0.94768 1.00681 1.20194 0.95612 0.95718 0.97954 1.20955 0.81262 0.80832 0.86548 1.90703 1.34205 1.71754 1.49021 1.48283 1.22205 1.34806 1.29385 1.21558 0.96614 0.93356 0.88394 1.22405 0.90266 1.00379 0.94917 1.61936 1.02192 1.46294 1.14805 1.22519 0.88802 0.96455 0.94329 0.94275 1.22738 0.96379 0.97830 0.98744 1.20873 0.88559 0.95524 0.88921 1.44733 1.03506 1.65608 1.21631 1.19485 0.82926 1.30186 1.04309 0.89643 1.25681 1.02612 1.00876 0.97017 1.70194 1.34549 1.43125 1.12365 0.85062 0.79655 0.76597 0.77922 1.21321 1.22288 1.19132 1.21579 0.88100 0.95257 0.92698 1.22605 0.99430 0.92496 0.94753 1.22091 0.81986 1.05131 0.91518 1.77326 1.02521 1.09607 1.24956 0.90572 0.85984 0.89817 0.77062 0.81397 0.83867 0.85112 0.90316 0.90182 0.89125 0.95332 0.90603 0.90830 0.97562 0.97286 0.94506 0.93862 0.94937 0.94446 0.88457 0.89505 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.39 16 2 N -0.39 -7.24 4.01 -369.56 -1.48 -8.72 16 3 C 0.05 0.76 11.49 83.54 0.96 1.72 16 4 C -0.28 -4.77 10.72 21.99 0.24 -4.54 16 5 C 0.06 1.39 6.02 43.10 0.26 1.65 16 6 C -0.05 -0.87 4.64 29.10 0.14 -0.74 16 7 C 0.52 12.33 7.70 87.66 0.67 13.00 16 8 O -0.58 -19.47 15.02 -3.03 -0.05 -19.51 16 9 N -0.61 -12.81 3.01 -818.00 -2.46 -15.28 16 10 C 0.12 2.86 6.59 86.35 0.57 3.43 16 11 C 0.05 1.19 5.48 86.38 0.47 1.66 16 12 N -0.53 -13.74 4.53 -861.97 -3.90 -17.64 16 13 C 0.09 2.94 2.71 46.31 0.13 3.06 16 14 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 15 C -0.12 -4.37 5.32 31.79 0.17 -4.20 16 16 C 0.19 9.38 5.37 86.73 0.47 9.84 16 17 N -0.63 -32.33 3.39 -691.98 -2.35 -34.68 16 18 C -0.24 -13.44 10.28 84.03 0.86 -12.58 16 19 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 21 N -0.95 -58.05 10.31 21.65 0.22 -57.83 16 22 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 C 0.15 5.88 5.66 86.85 0.49 6.37 16 27 C 0.04 0.72 5.48 86.37 0.47 1.19 16 28 C 0.11 1.74 6.50 86.34 0.56 2.30 16 29 N -0.32 -8.45 11.92 -47.38 -0.56 -9.01 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.14 1.34 7.64 -2.39 -0.02 1.32 16 36 H 0.13 1.51 8.00 -2.39 -0.02 1.50 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.07 7.07 -2.39 -0.02 2.05 16 39 H 0.09 2.18 6.86 -2.39 -0.02 2.16 16 40 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.07 2.44 7.94 -2.39 -0.02 2.42 16 43 H 0.01 0.35 7.51 -2.39 -0.02 0.33 16 44 H 0.01 0.50 7.38 -2.38 -0.02 0.49 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 47 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.10 1.93 6.80 -2.39 -0.02 1.91 16 50 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.12 0.98 6.02 -2.39 -0.01 0.97 16 Total: -1.00 -83.88 400.73 0.74 -83.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.91 Total: 10.63 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 8.39 Total: 21.07 kcal Atomic # 7 Polarization: -132.63 SS G_CDS: -10.54 Total: -143.16 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -83.88 0.74 -83.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046026909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.497 kcal (2) G-P(sol) polarization free energy of solvation -83.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds