Wall clock time and date at job start Wed Apr 1 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34947 * 126.03608 * 2 1 4 4 C 1.35318 * 107.74169 * 179.97438 * 3 2 1 5 5 C 1.39862 * 107.92342 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.89971 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47484 * 124.99708 * 6 5 4 8 8 O 1.21278 * 120.00035 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00120 * 180.02562 * 7 6 5 10 10 C 1.47080 * 120.88034 * 179.97438 * 9 7 6 11 11 C 1.53237 * 108.52047 * 231.20313 * 10 9 7 12 12 N 1.46894 * 109.34158 * 306.16994 * 11 10 9 13 13 C 1.46902 * 110.99797 * 187.25308 * 12 11 10 14 14 H 1.09001 * 110.91879 * 303.90162 * 13 12 11 15 15 C 1.55161 * 111.00468 * 180.02562 * 13 12 11 16 16 C 1.54322 * 102.94520 * 206.42658 * 15 13 12 17 17 N 1.47025 * 107.27043 * 22.19131 * 16 15 13 18 18 C 1.36933 * 125.64647 * 181.02343 * 17 16 15 19 19 H 1.08003 * 119.99851 * 168.96850 * 18 17 16 20 20 C 1.38806 * 120.00288 * 348.97781 * 18 17 16 21 21 N 1.31617 * 120.00285 * 165.60962 * 20 18 17 22 22 Si 1.86803 * 119.99894 * 345.60348 * 20 18 17 23 23 H 1.48501 * 109.46964 * 65.29782 * 22 20 18 24 24 H 1.48500 * 109.47304 * 305.29781 * 22 20 18 25 25 H 1.48498 * 109.47395 * 185.29602 * 22 20 18 26 26 C 1.47428 * 108.70148 * 1.28576 * 17 16 15 27 27 C 1.46904 * 111.26722 * 63.10832 * 12 11 10 28 28 C 1.47080 * 120.88145 * 0.02562 * 9 7 6 29 29 N 1.30841 * 108.20317 * 0.25519 * 5 4 3 30 30 H 1.08997 * 109.46866 * 90.00137 * 1 2 3 31 31 H 1.08999 * 109.47044 * 210.00157 * 1 2 3 32 32 H 1.09004 * 109.46853 * 330.00441 * 1 2 3 33 33 H 1.07994 * 126.13070 * 0.03093 * 3 2 1 34 34 H 1.08002 * 126.03568 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47315 * 4.98826 * 6 5 4 36 36 H 1.09001 * 109.47081 * 244.99486 * 6 5 4 37 37 H 1.09008 * 109.62642 * 111.49765 * 10 9 7 38 38 H 1.09003 * 109.79129 * 351.01481 * 10 9 7 39 39 H 1.09006 * 109.48873 * 186.20999 * 11 10 9 40 40 H 1.08998 * 109.51709 * 66.15266 * 11 10 9 41 41 H 1.08999 * 110.71774 * 88.05938 * 15 13 12 42 42 H 1.09004 * 110.71877 * 324.78821 * 15 13 12 43 43 H 1.09005 * 109.87702 * 262.77700 * 16 15 13 44 44 H 1.09000 * 109.88338 * 141.61019 * 16 15 13 45 45 H 0.97002 * 119.99988 * 354.92274 * 21 20 18 46 46 H 1.09004 * 110.36379 * 94.48466 * 26 17 16 47 47 H 1.09002 * 110.36529 * 216.80246 * 26 17 16 48 48 H 1.09003 * 109.49431 * 56.85397 * 27 12 11 49 49 H 1.08997 * 109.49312 * 176.93256 * 27 12 11 50 50 H 1.09001 * 109.62618 * 248.50407 * 28 9 7 51 51 H 1.08996 * 109.63119 * 8.88272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7497 -1.6236 0.0014 7 6 4.6716 -2.5780 1.1650 8 8 3.7229 -2.5379 1.9196 9 7 5.6564 -3.4755 1.3678 10 6 5.6002 -4.4156 2.4975 11 6 6.9255 -4.3369 3.2627 12 7 8.0394 -4.5529 2.3298 13 6 9.3160 -4.6563 3.0492 14 1 9.4880 -3.7738 3.6655 15 6 10.4929 -4.8838 2.0639 16 6 11.5331 -5.6222 2.9324 17 7 10.8068 -6.2436 4.0496 18 6 11.3714 -6.9757 5.0596 19 1 10.7853 -7.2406 5.9273 20 6 12.6970 -7.3772 4.9686 21 7 13.3237 -7.8255 6.0356 22 14 13.5915 -7.2814 3.3315 23 1 13.7224 -5.8602 2.9213 24 1 12.8212 -8.0247 2.3022 25 1 14.9421 -7.8832 3.4693 26 6 9.3693 -5.9532 3.8987 27 6 8.0935 -3.4962 1.3107 28 6 6.8164 -3.5400 0.4659 29 7 2.2892 -1.1328 -0.0059 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9282 2.1193 0.0005 34 1 4.4211 1.2963 0.0003 35 1 5.6482 -1.0133 0.0917 36 1 4.7865 -2.1887 -0.9301 37 1 5.4528 -5.4289 2.1237 38 1 4.7779 -4.1469 3.1607 39 1 6.9449 -5.1045 4.0364 40 1 7.0222 -3.3538 3.7234 41 1 10.8904 -3.9319 1.7117 42 1 10.1791 -5.5058 1.2256 43 1 12.2664 -4.9127 3.3159 44 1 12.0314 -6.3904 2.3411 45 1 12.8839 -7.8067 6.9000 46 1 8.8697 -6.7707 3.3788 47 1 8.9116 -5.7866 4.8738 48 1 8.1737 -2.5245 1.7982 49 1 8.9601 -3.6540 0.6687 50 1 6.7862 -4.4690 -0.1036 51 1 6.7967 -2.6910 -0.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046026910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:39 Heat of formation + Delta-G solvation = 104.781067 kcal Electronic energy + Delta-G solvation = -30560.787329 eV Core-core repulsion = 26498.776948 eV Total energy + Delta-G solvation = -4062.010381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50680 -40.27328 -38.72865 -36.91738 -34.39400 -34.19431 -32.30655 -31.69536 -30.68076 -30.00396 -29.49669 -28.43484 -26.53092 -25.81277 -24.04431 -23.25213 -21.92998 -21.45682 -20.60331 -20.29926 -19.79128 -18.87434 -17.55456 -17.39888 -17.20622 -16.12910 -15.88585 -15.74056 -15.56818 -15.28537 -14.97350 -14.66128 -14.34133 -14.07117 -14.02212 -13.79332 -13.41812 -13.31239 -13.10388 -12.95136 -12.82611 -12.66730 -12.49483 -12.34296 -12.21751 -12.15037 -11.69064 -11.50388 -11.27777 -11.05290 -10.94409 -10.83970 -10.70757 -10.32720 -9.99914 -9.93806 -9.49483 -9.29639 -8.98666 -8.87202 -8.83687 -8.68646 -8.27232 -7.00537 -6.28781 -3.20010 1.62188 2.20871 2.39624 2.50737 2.88587 3.43113 3.52032 3.71770 3.81542 4.08679 4.29621 4.44224 4.56478 4.64678 4.71882 4.75129 4.75224 4.84234 4.94798 5.01647 5.03133 5.06556 5.12329 5.18197 5.23796 5.34658 5.36204 5.44781 5.47823 5.50278 5.55629 5.57777 5.67096 5.71266 5.75456 5.86338 5.92873 6.12347 6.18488 6.27945 6.34704 6.39292 6.51168 6.59078 6.71057 6.78629 7.06379 7.14096 7.27944 7.47050 7.70596 8.03763 8.35962 9.06662 9.58451 10.25349 11.22090 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.001849 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.856865 B =15136.997681 C =15548.917456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.049 3.951 4 C -0.266 4.266 5 C 0.082 3.918 6 C -0.058 4.058 7 C 0.518 3.482 8 O -0.527 6.527 9 N -0.615 5.615 10 C 0.119 3.881 11 C 0.042 3.958 12 N -0.526 5.526 13 C 0.068 3.932 14 H 0.051 0.949 15 C -0.121 4.121 16 C 0.112 3.888 17 N -0.613 5.613 18 C -0.320 4.320 19 H 0.078 0.922 20 C -0.023 4.023 21 N -0.930 5.930 22 Si 1.073 2.927 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.302 1.302 26 C 0.149 3.851 27 C 0.038 3.962 28 C 0.111 3.889 29 N -0.263 5.263 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.261 0.739 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 19.402 -17.275 34.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.096 4.096 4 C -0.296 4.296 5 C -0.085 4.085 6 C -0.099 4.099 7 C 0.305 3.695 8 O -0.402 6.402 9 N -0.350 5.350 10 C -0.003 4.003 11 C -0.087 4.087 12 N -0.251 5.251 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.159 4.159 16 C -0.013 4.013 17 N -0.341 5.341 18 C -0.447 4.447 19 H 0.095 0.905 20 C -0.222 4.222 21 N -0.571 5.571 22 Si 0.907 3.093 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.231 1.231 26 C 0.022 3.978 27 C -0.091 4.091 28 C -0.012 4.012 29 N -0.086 5.086 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.110 0.890 50 H 0.098 0.902 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.224 17.589 -17.761 33.447 hybrid contribution -0.778 1.894 1.181 2.363 sum -23.001 19.483 -16.579 34.402 Atomic orbital electron populations 1.21844 0.74281 1.04581 1.03216 1.48544 1.06671 1.03863 1.56890 1.22495 0.91139 0.93473 1.02501 1.21344 0.97186 0.94012 1.17012 1.21523 0.92719 0.93380 1.00927 1.20050 0.95041 0.96051 0.98778 1.20351 0.82054 0.80775 0.86314 1.90731 1.32205 1.70289 1.46999 1.48175 1.21730 1.35512 1.29563 1.21694 0.97577 0.92940 0.88093 1.22480 0.90353 1.00906 0.94924 1.61937 1.03538 1.44835 1.14830 1.22927 0.87422 0.98785 0.94955 0.93077 1.22650 0.95150 1.00016 0.98077 1.21962 0.94736 0.95076 0.89518 1.44769 1.00831 1.61485 1.27035 1.20170 0.96903 1.30856 0.96790 0.90465 1.25865 0.93704 0.97740 1.04886 1.70894 1.38418 1.48753 0.99047 0.83806 0.74894 0.75777 0.74821 1.21457 1.22650 1.23090 1.21519 0.87097 0.93025 0.96133 1.22477 0.97988 0.93377 0.95216 1.21900 0.84238 1.03057 0.92008 1.77432 1.01187 1.07229 1.22719 0.90816 0.89224 0.89534 0.80992 0.83478 0.86980 0.87251 0.90619 0.88877 0.89033 0.94559 0.91695 0.90468 0.93787 0.95295 0.92923 0.94680 0.94241 0.94508 0.88980 0.90195 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.85 0.69 1.22 16 2 N -0.38 -3.62 4.01 -68.16 -0.27 -3.89 16 3 C 0.05 0.39 11.49 -17.22 -0.20 0.19 16 4 C -0.27 -2.38 10.72 -40.01 -0.43 -2.81 16 5 C 0.08 0.91 6.01 -82.41 -0.50 0.41 16 6 C -0.06 -0.50 4.64 -29.04 -0.13 -0.63 16 7 C 0.52 6.23 7.70 -10.98 -0.08 6.14 16 8 O -0.53 -8.58 15.03 5.56 0.08 -8.50 16 9 N -0.61 -6.59 3.01 -172.49 -0.52 -7.10 16 10 C 0.12 1.39 6.59 -3.60 -0.02 1.37 16 11 C 0.04 0.52 5.52 -3.70 -0.02 0.50 16 12 N -0.53 -6.81 4.53 -223.67 -1.01 -7.82 16 13 C 0.07 1.08 2.73 -65.44 -0.18 0.90 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.12 -1.94 5.03 -24.90 -0.13 -2.06 16 16 C 0.11 2.43 4.61 -3.06 -0.01 2.41 16 17 N -0.61 -15.12 3.32 -169.93 -0.56 -15.69 16 18 C -0.32 -9.28 10.56 -15.06 -0.16 -9.44 16 19 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 20 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 21 N -0.93 -29.51 13.70 55.49 0.76 -28.75 16 22 Si 1.07 27.05 24.53 -169.99 -4.17 22.88 16 23 H -0.29 -6.57 5.43 56.52 0.31 -6.26 16 24 H -0.30 -7.27 6.84 56.52 0.39 -6.88 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 C 0.15 2.98 5.96 -2.41 -0.01 2.96 16 27 C 0.04 0.38 5.42 -3.72 -0.02 0.36 16 28 C 0.11 0.90 6.50 -3.63 -0.02 0.88 16 29 N -0.26 -3.40 11.94 33.67 0.40 -3.00 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.11 0.65 7.64 -51.93 -0.40 0.25 16 36 H 0.11 0.73 8.00 -51.93 -0.42 0.31 16 37 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.09 1.17 7.07 -51.93 -0.37 0.81 16 39 H 0.09 1.18 7.05 -51.93 -0.37 0.81 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 42 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 43 H 0.04 1.00 6.78 -51.93 -0.35 0.64 16 44 H 0.03 0.67 3.83 -51.93 -0.20 0.47 16 45 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.84 6.64 -51.93 -0.34 0.49 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.09 0.45 6.02 -51.93 -0.31 0.14 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -38.63 393.04 -9.03 -47.67 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.33 Total: -3.35 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.33 Total: 1.63 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.21 Total: -66.26 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -4.17 Total: 22.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.63 -9.03 -47.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046026910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.447 kcal (2) G-P(sol) polarization free energy of solvation -38.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds