Wall clock time and date at job start Wed Apr 1 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34947 * 126.03608 * 2 1 4 4 C 1.35318 * 107.74169 * 179.97438 * 3 2 1 5 5 C 1.39862 * 107.92342 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.89971 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47484 * 124.99708 * 6 5 4 8 8 O 1.21278 * 120.00035 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00120 * 180.02562 * 7 6 5 10 10 C 1.47080 * 120.88034 * 179.97438 * 9 7 6 11 11 C 1.53237 * 108.52047 * 231.20313 * 10 9 7 12 12 N 1.46894 * 109.34158 * 306.16994 * 11 10 9 13 13 C 1.46902 * 110.99797 * 187.25308 * 12 11 10 14 14 H 1.09001 * 110.91879 * 303.90162 * 13 12 11 15 15 C 1.55161 * 111.00468 * 180.02562 * 13 12 11 16 16 C 1.54322 * 102.94520 * 206.42658 * 15 13 12 17 17 N 1.47025 * 107.27043 * 22.19131 * 16 15 13 18 18 C 1.36933 * 125.64647 * 181.02343 * 17 16 15 19 19 H 1.08003 * 119.99851 * 168.96850 * 18 17 16 20 20 C 1.38806 * 120.00288 * 348.97781 * 18 17 16 21 21 N 1.31617 * 120.00285 * 165.60962 * 20 18 17 22 22 Si 1.86803 * 119.99894 * 345.60348 * 20 18 17 23 23 H 1.48501 * 109.46964 * 65.29782 * 22 20 18 24 24 H 1.48500 * 109.47304 * 305.29781 * 22 20 18 25 25 H 1.48498 * 109.47395 * 185.29602 * 22 20 18 26 26 C 1.47428 * 108.70148 * 1.28576 * 17 16 15 27 27 C 1.46904 * 111.26722 * 63.10832 * 12 11 10 28 28 C 1.47080 * 120.88145 * 0.02562 * 9 7 6 29 29 N 1.30841 * 108.20317 * 0.25519 * 5 4 3 30 30 H 1.08997 * 109.46866 * 90.00137 * 1 2 3 31 31 H 1.08999 * 109.47044 * 210.00157 * 1 2 3 32 32 H 1.09004 * 109.46853 * 330.00441 * 1 2 3 33 33 H 1.07994 * 126.13070 * 0.03093 * 3 2 1 34 34 H 1.08002 * 126.03568 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47315 * 4.98826 * 6 5 4 36 36 H 1.09001 * 109.47081 * 244.99486 * 6 5 4 37 37 H 1.09008 * 109.62642 * 111.49765 * 10 9 7 38 38 H 1.09003 * 109.79129 * 351.01481 * 10 9 7 39 39 H 1.09006 * 109.48873 * 186.20999 * 11 10 9 40 40 H 1.08998 * 109.51709 * 66.15266 * 11 10 9 41 41 H 1.08999 * 110.71774 * 88.05938 * 15 13 12 42 42 H 1.09004 * 110.71877 * 324.78821 * 15 13 12 43 43 H 1.09005 * 109.87702 * 262.77700 * 16 15 13 44 44 H 1.09000 * 109.88338 * 141.61019 * 16 15 13 45 45 H 0.97002 * 119.99988 * 354.92274 * 21 20 18 46 46 H 1.09004 * 110.36379 * 94.48466 * 26 17 16 47 47 H 1.09002 * 110.36529 * 216.80246 * 26 17 16 48 48 H 1.09003 * 109.49431 * 56.85397 * 27 12 11 49 49 H 1.08997 * 109.49312 * 176.93256 * 27 12 11 50 50 H 1.09001 * 109.62618 * 248.50407 * 28 9 7 51 51 H 1.08996 * 109.63119 * 8.88272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7497 -1.6236 0.0014 7 6 4.6716 -2.5780 1.1650 8 8 3.7229 -2.5379 1.9196 9 7 5.6564 -3.4755 1.3678 10 6 5.6002 -4.4156 2.4975 11 6 6.9255 -4.3369 3.2627 12 7 8.0394 -4.5529 2.3298 13 6 9.3160 -4.6563 3.0492 14 1 9.4880 -3.7738 3.6655 15 6 10.4929 -4.8838 2.0639 16 6 11.5331 -5.6222 2.9324 17 7 10.8068 -6.2436 4.0496 18 6 11.3714 -6.9757 5.0596 19 1 10.7853 -7.2406 5.9273 20 6 12.6970 -7.3772 4.9686 21 7 13.3237 -7.8255 6.0356 22 14 13.5915 -7.2814 3.3315 23 1 13.7224 -5.8602 2.9213 24 1 12.8212 -8.0247 2.3022 25 1 14.9421 -7.8832 3.4693 26 6 9.3693 -5.9532 3.8987 27 6 8.0935 -3.4962 1.3107 28 6 6.8164 -3.5400 0.4659 29 7 2.2892 -1.1328 -0.0059 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9282 2.1193 0.0005 34 1 4.4211 1.2963 0.0003 35 1 5.6482 -1.0133 0.0917 36 1 4.7865 -2.1887 -0.9301 37 1 5.4528 -5.4289 2.1237 38 1 4.7779 -4.1469 3.1607 39 1 6.9449 -5.1045 4.0364 40 1 7.0222 -3.3538 3.7234 41 1 10.8904 -3.9319 1.7117 42 1 10.1791 -5.5058 1.2256 43 1 12.2664 -4.9127 3.3159 44 1 12.0314 -6.3904 2.3411 45 1 12.8839 -7.8067 6.9000 46 1 8.8697 -6.7707 3.3788 47 1 8.9116 -5.7866 4.8738 48 1 8.1737 -2.5245 1.7982 49 1 8.9601 -3.6540 0.6687 50 1 6.7862 -4.4690 -0.1036 51 1 6.7967 -2.6910 -0.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046026910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:38 Heat of formation + Delta-G solvation = 75.180237 kcal Electronic energy + Delta-G solvation = -30562.070917 eV Core-core repulsion = 26498.776948 eV Total energy + Delta-G solvation = -4063.293969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13933 -41.17872 -39.96935 -38.21324 -35.65766 -34.82948 -34.19913 -32.61843 -31.33180 -31.16123 -30.69698 -29.76023 -27.60676 -26.58900 -25.40589 -24.57394 -22.86956 -22.26503 -22.03270 -21.38853 -20.86484 -19.68856 -19.55769 -18.35017 -17.82111 -17.26523 -17.06657 -16.79988 -16.57853 -16.18376 -15.96029 -15.69467 -15.49220 -15.25239 -15.01494 -14.74034 -14.64393 -14.44619 -14.22697 -13.99673 -13.83714 -13.61079 -13.45916 -13.31391 -13.12113 -13.01110 -12.95778 -12.84746 -12.56785 -12.33536 -12.26085 -12.08055 -11.64667 -11.60289 -11.49847 -11.38801 -11.03677 -10.84773 -10.65621 -10.17864 -9.81006 -9.44080 -9.28520 -9.08364 -8.66112 -5.48107 1.01459 1.42036 1.53108 1.63721 1.68657 1.75426 1.76508 2.12784 2.57206 2.71012 3.15624 3.40746 3.48559 3.59939 3.65175 3.90020 3.91477 3.96565 4.05737 4.14988 4.18024 4.24164 4.31352 4.36116 4.38802 4.42272 4.44585 4.51119 4.54087 4.61897 4.66835 4.72036 4.76452 4.82581 4.85908 4.88867 4.92679 4.94394 4.98997 5.09523 5.14416 5.15759 5.26337 5.45620 5.52874 5.71887 5.99471 6.08087 6.11608 6.22451 6.43954 6.82659 6.83200 7.18579 7.44317 8.09281 8.86916 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.001849 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.856865 B =15136.997681 C =15548.917456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 C 0.053 3.947 4 C -0.284 4.284 5 C 0.063 3.937 6 C -0.052 4.052 7 C 0.514 3.486 8 O -0.580 6.580 9 N -0.613 5.613 10 C 0.125 3.875 11 C 0.049 3.951 12 N -0.528 5.528 13 C 0.087 3.913 14 H 0.047 0.953 15 C -0.104 4.104 16 C 0.098 3.902 17 N -0.635 5.635 18 C -0.313 4.313 19 H 0.041 0.959 20 C -0.082 4.082 21 N -0.965 5.965 22 Si 1.114 2.886 23 H -0.246 1.246 24 H -0.284 1.284 25 H -0.314 1.314 26 C 0.144 3.856 27 C 0.035 3.965 28 C 0.111 3.889 29 N -0.322 5.322 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.212 0.788 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.245 0.755 46 H 0.033 0.967 47 H 0.025 0.975 48 H 0.040 0.960 49 H 0.113 0.887 50 H 0.087 0.913 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.214 22.471 -21.370 38.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.093 4.093 4 C -0.313 4.313 5 C -0.103 4.103 6 C -0.093 4.093 7 C 0.303 3.697 8 O -0.459 6.459 9 N -0.347 5.347 10 C 0.002 3.998 11 C -0.080 4.080 12 N -0.253 5.253 13 C -0.023 4.023 14 H 0.065 0.935 15 C -0.142 4.142 16 C -0.026 4.026 17 N -0.363 5.363 18 C -0.441 4.441 19 H 0.059 0.941 20 C -0.274 4.274 21 N -0.609 5.609 22 Si 0.941 3.059 23 H -0.170 1.170 24 H -0.212 1.212 25 H -0.243 1.243 26 C 0.019 3.981 27 C -0.093 4.093 28 C -0.011 4.011 29 N -0.146 5.146 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.229 0.771 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.131 0.869 50 H 0.105 0.895 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.363 20.688 -21.900 37.519 hybrid contribution -0.916 0.947 2.548 2.869 sum -23.279 21.635 -19.351 37.208 Atomic orbital electron populations 1.22122 0.72586 1.05405 1.04477 1.48891 1.07879 1.03688 1.56585 1.23200 0.90863 0.94686 1.00543 1.21741 0.98600 0.93478 1.17476 1.22023 0.92873 0.94807 1.00639 1.20193 0.95619 0.95634 0.97835 1.21014 0.81255 0.80870 0.86578 1.90710 1.34322 1.71770 1.49083 1.48282 1.22378 1.34683 1.29341 1.21497 0.96432 0.93383 0.88496 1.22372 0.90722 1.00081 0.94820 1.61901 1.01868 1.46793 1.14750 1.22578 0.89263 0.95857 0.94552 0.93540 1.22631 0.93011 1.01441 0.97137 1.22177 0.96299 0.95039 0.89072 1.44858 1.03180 1.61189 1.27087 1.20057 0.96744 1.30450 0.96898 0.94120 1.27263 0.95116 0.97717 1.07322 1.71004 1.39085 1.51657 0.99139 0.83352 0.73152 0.78223 0.71160 1.17041 1.21152 1.24323 1.21633 0.84553 0.95420 0.96506 1.22666 0.99778 0.92314 0.94518 1.22155 0.82015 1.05313 0.91586 1.77333 1.02587 1.09629 1.25005 0.89324 0.90557 0.86567 0.77118 0.81249 0.83584 0.85021 0.90484 0.90550 0.90369 0.95129 0.87741 0.88728 0.94602 0.95577 0.94570 0.94939 0.95673 0.94158 0.86914 0.89477 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.47 127.77 1.47 2.35 16 2 N -0.39 -7.02 4.01 -369.55 -1.48 -8.50 16 3 C 0.05 0.71 11.49 83.54 0.96 1.67 16 4 C -0.28 -4.41 10.72 21.99 0.24 -4.17 16 5 C 0.06 1.30 6.01 43.10 0.26 1.56 16 6 C -0.05 -0.74 4.64 29.10 0.14 -0.61 16 7 C 0.51 11.61 7.70 87.66 0.67 12.29 16 8 O -0.58 -19.17 15.03 -3.02 -0.05 -19.22 16 9 N -0.61 -11.77 3.01 -818.02 -2.46 -14.23 16 10 C 0.13 2.85 6.59 86.35 0.57 3.42 16 11 C 0.05 1.17 5.52 86.38 0.48 1.65 16 12 N -0.53 -12.15 4.53 -861.55 -3.90 -16.05 16 13 C 0.09 2.54 2.73 46.38 0.13 2.67 16 14 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 15 C -0.10 -2.87 5.03 31.78 0.16 -2.71 16 16 C 0.10 3.98 4.61 86.73 0.40 4.38 16 17 N -0.63 -31.16 3.32 -691.54 -2.30 -33.46 16 18 C -0.31 -18.71 10.56 84.03 0.89 -17.82 16 19 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 20 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 21 N -0.96 -63.48 13.70 21.65 0.30 -63.19 16 22 Si 1.11 54.02 24.53 68.60 1.68 55.70 16 23 H -0.25 -10.24 5.43 99.48 0.54 -9.70 16 24 H -0.28 -12.99 6.84 99.48 0.68 -12.31 16 25 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 26 C 0.14 5.75 5.96 86.93 0.52 6.27 16 27 C 0.04 0.53 5.42 86.37 0.47 1.00 16 28 C 0.11 1.30 6.50 86.33 0.56 1.87 16 29 N -0.32 -8.23 11.94 -47.39 -0.57 -8.79 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.01 7.64 -2.39 -0.02 0.99 16 36 H 0.13 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 2.01 7.07 -2.39 -0.02 1.99 16 39 H 0.08 2.05 7.05 -2.38 -0.02 2.04 16 40 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 2.13 7.96 -2.39 -0.02 2.11 16 42 H 0.09 2.34 8.11 -2.38 -0.02 2.32 16 43 H 0.04 1.51 6.78 -2.38 -0.02 1.49 16 44 H 0.03 1.11 3.83 -2.39 -0.01 1.10 16 45 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 46 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.02 1.05 7.87 -2.39 -0.02 1.03 16 48 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.11 1.32 6.64 -2.39 -0.02 1.30 16 50 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.13 0.54 6.02 -2.39 -0.01 0.52 16 Total: -1.00 -90.66 393.04 0.28 -90.38 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.69 Total: 8.10 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 8.36 Total: 9.27 kcal Atomic # 7 Polarization: -133.82 SS G_CDS: -10.41 Total: -144.23 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 1.68 Total: 55.70 kcal Total: -90.66 0.28 -90.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046026910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.561 kcal (2) G-P(sol) polarization free energy of solvation -90.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds