Wall clock time and date at job start Wed Apr 1 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34807 * 126.60015 * 2 1 4 4 C 1.36589 * 106.84176 * 180.10855 * 3 2 1 5 5 C 1.47527 * 125.76986 * 179.90118 * 4 3 2 6 6 O 1.21598 * 120.00223 * 7.16601 * 5 4 3 7 7 N 1.34781 * 119.99771 * 187.17708 * 5 4 3 8 8 C 1.46991 * 120.61815 * 6.17476 * 7 5 4 9 9 C 1.53190 * 108.73707 * 126.38943 * 8 7 5 10 10 C 1.53040 * 109.33963 * 54.62857 * 9 8 7 11 11 C 1.53037 * 109.53678 * 298.61883 * 10 9 8 12 12 H 1.09000 * 109.49572 * 301.38276 * 11 10 9 13 13 C 1.52998 * 109.49960 * 181.31680 * 11 10 9 14 14 C 1.53042 * 109.45881 * 180.02562 * 13 11 10 15 15 C 1.53192 * 109.31053 * 178.61280 * 14 13 11 16 16 N 1.46924 * 108.77894 * 54.63245 * 15 14 13 17 17 C 1.36936 * 120.63232 * 126.36782 * 16 15 14 18 18 H 1.08006 * 120.00030 * 211.97817 * 17 16 15 19 19 C 1.38807 * 120.00356 * 31.98133 * 17 16 15 20 20 N 1.31622 * 119.99951 * 21.08301 * 19 17 16 21 21 Si 1.86801 * 120.00481 * 201.08799 * 19 17 16 22 22 H 1.48501 * 109.47367 * 89.99642 * 21 19 17 23 23 H 1.48501 * 109.46994 * 209.99802 * 21 19 17 24 24 H 1.48505 * 109.46902 * 329.99386 * 21 19 17 25 25 C 1.46932 * 118.73731 * 306.39357 * 16 15 14 26 26 C 1.53040 * 109.46319 * 59.99490 * 13 11 10 27 27 C 1.46924 * 120.62759 * 186.16180 * 7 5 4 28 28 N 1.34400 * 108.46012 * 359.63384 * 4 3 2 29 29 N 1.28759 * 109.51978 * 0.22241 * 28 4 3 30 30 H 1.08999 * 109.46945 * 270.27557 * 1 2 3 31 31 H 1.08994 * 109.46645 * 30.27210 * 1 2 3 32 32 H 1.08990 * 109.47247 * 150.27570 * 1 2 3 33 33 H 1.08005 * 126.57469 * 359.96648 * 3 2 1 34 34 H 1.09008 * 109.62898 * 6.60645 * 8 7 5 35 35 H 1.08994 * 109.58527 * 246.15729 * 8 7 5 36 36 H 1.09000 * 109.50158 * 294.65756 * 9 8 7 37 37 H 1.08999 * 109.49717 * 174.59355 * 9 8 7 38 38 H 1.09000 * 109.46226 * 58.63430 * 10 9 8 39 39 H 1.08993 * 109.46114 * 178.59513 * 10 9 8 40 40 H 1.09000 * 109.45743 * 300.02078 * 13 11 10 41 41 H 1.09002 * 109.49717 * 298.55858 * 14 13 11 42 42 H 1.08999 * 109.50287 * 58.66225 * 14 13 11 43 43 H 1.09001 * 109.58962 * 294.84895 * 15 14 13 44 44 H 1.09000 * 109.59114 * 174.41898 * 15 14 13 45 45 H 0.96999 * 120.00844 * 180.02562 * 20 19 17 46 46 H 1.08990 * 109.58373 * 293.81534 * 25 16 15 47 47 H 1.09002 * 109.58139 * 173.39080 * 25 16 15 48 48 H 1.08997 * 109.49551 * 301.34386 * 26 13 11 49 49 H 1.09006 * 109.49146 * 61.40193 * 26 13 11 50 50 H 1.08999 * 109.58946 * 113.83662 * 27 7 5 51 51 H 1.09002 * 109.59073 * 353.41379 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0823 0.0000 4 6 3.5543 0.6205 -0.0025 5 6 4.7705 1.4555 -0.0054 6 8 4.6807 2.6611 0.1255 7 7 5.9812 0.8821 -0.1535 8 6 6.0988 -0.5533 -0.4476 9 6 6.9657 -0.7299 -1.6982 10 6 8.3049 -0.0187 -1.4912 11 6 8.0624 1.4775 -1.2798 12 1 7.5412 1.8874 -2.1449 13 6 9.4037 2.1926 -1.1057 14 6 9.1601 3.6886 -0.8937 15 6 10.5029 4.3959 -0.6852 16 7 11.3835 4.0826 -1.8187 17 6 11.9783 5.0847 -2.5380 18 1 12.1719 4.9511 -3.5921 19 6 12.3323 6.2721 -1.9124 20 7 12.4923 6.3057 -0.6064 21 14 12.5816 7.8227 -2.9240 22 1 11.2939 8.5541 -3.0344 23 1 13.5881 8.6899 -2.2606 24 1 13.0610 7.4566 -4.2810 25 6 11.6135 2.6736 -2.1663 26 6 10.2579 1.9865 -2.3586 27 6 7.2082 1.6799 -0.0244 28 7 3.5238 -0.7231 0.0042 29 7 2.3008 -1.1258 0.0060 30 1 -0.3633 0.0049 1.0277 31 1 -0.3632 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5095 33 1 1.9562 2.1161 -0.0005 34 1 5.1088 -0.9726 -0.6272 35 1 6.5659 -1.0619 0.3956 36 1 6.4544 -0.2994 -2.5592 37 1 7.1408 -1.7916 -1.8725 38 1 8.8045 -0.4328 -0.6155 39 1 8.9330 -0.1642 -2.3700 40 1 9.9240 1.7828 -0.2400 41 1 8.6624 4.1039 -1.7700 42 1 8.5320 3.8341 -0.0148 43 1 10.9603 4.0463 0.2403 44 1 10.3443 5.4731 -0.6326 45 1 12.7393 7.1355 -0.1691 46 1 12.1614 2.1836 -1.3616 47 1 12.1876 2.6145 -3.0910 48 1 10.4114 0.9200 -2.5228 49 1 9.7491 2.4179 -3.2207 50 1 7.7657 1.3534 0.8535 51 1 6.9497 2.7341 0.0758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047236343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:04 Heat of formation + Delta-G solvation = 86.218927 kcal Electronic energy + Delta-G solvation = -31232.424184 eV Core-core repulsion = 27169.608888 eV Total energy + Delta-G solvation = -4062.815296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.61850 -40.09964 -38.30437 -36.70324 -35.17797 -33.96507 -32.32062 -31.61166 -31.15582 -29.78837 -29.22225 -28.21377 -25.84184 -25.19605 -23.42895 -23.15917 -22.57472 -21.91943 -21.23369 -20.26150 -19.49683 -18.99629 -17.74634 -16.78182 -16.63046 -16.55651 -16.04261 -15.23119 -15.04196 -14.72459 -14.52083 -14.30732 -13.94625 -13.87146 -13.78888 -13.58390 -13.40941 -13.33435 -12.99342 -12.92490 -12.77727 -12.45105 -12.17692 -12.06937 -11.70465 -11.32638 -11.24416 -10.98138 -10.88298 -10.82365 -10.64825 -10.55892 -10.41940 -10.30745 -10.10687 -10.05108 -9.91402 -9.75498 -9.64997 -9.33443 -9.17967 -8.57285 -8.37382 -6.53178 -5.72229 -3.15258 0.74929 1.38722 1.61478 2.87055 3.10983 3.43048 3.50115 3.51160 3.84467 3.89797 4.32256 4.42137 4.56925 4.57684 4.71617 4.78056 4.93425 4.96331 5.01721 5.04920 5.20955 5.34238 5.42191 5.52026 5.56442 5.69780 5.73992 5.81899 5.83426 5.88466 5.94487 6.00765 6.08475 6.12095 6.18627 6.23270 6.34030 6.45968 6.48001 6.59206 6.66313 6.76015 6.83910 6.93749 6.99083 7.12272 7.30209 7.43595 7.56390 7.67662 7.89546 8.05233 8.55339 9.29423 9.93457 10.53968 11.35644 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002238 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.690127 B =12510.348577 C =13431.181325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.363 5.363 3 C 0.093 3.907 4 C -0.094 4.094 5 C 0.600 3.400 6 O -0.538 6.538 7 N -0.593 5.593 8 C 0.083 3.917 9 C -0.133 4.133 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.071 0.929 13 C -0.069 4.069 14 C -0.137 4.137 15 C 0.175 3.825 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.145 3.855 26 C -0.126 4.126 27 C 0.115 3.885 28 N -0.204 5.204 29 N -0.070 5.070 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.206 0.794 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.072 0.928 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.400 -16.450 1.751 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.148 5.148 3 C -0.063 4.063 4 C -0.233 4.233 5 C 0.386 3.614 6 O -0.415 6.415 7 N -0.324 5.324 8 C -0.040 4.040 9 C -0.171 4.171 10 C -0.155 4.155 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.088 4.088 14 C -0.176 4.176 15 C 0.049 3.951 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.079 0.921 19 C -0.193 4.193 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.019 3.981 26 C -0.165 4.165 27 C -0.007 4.007 28 N -0.077 5.077 29 N -0.049 5.049 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.223 0.777 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.394 -17.196 1.941 29.908 hybrid contribution -0.070 1.857 -0.418 1.904 sum -24.464 -15.339 1.523 28.915 Atomic orbital electron populations 1.22223 0.72395 1.05900 1.04882 1.50351 1.09169 1.05666 1.49593 1.23398 0.90049 0.95079 0.97806 1.21529 0.94731 0.90234 1.16784 1.16813 0.81616 0.86061 0.76958 1.90827 1.86018 1.13315 1.51304 1.47937 1.05301 1.10422 1.68745 1.22554 1.04045 0.80106 0.97337 1.21924 0.96584 1.00757 0.97871 1.21665 0.96529 0.94988 1.02340 1.21583 0.96692 0.95438 0.97583 0.91096 1.21004 0.93263 0.95967 0.98568 1.22267 1.00449 0.94598 1.00297 1.20651 0.86251 0.98982 0.89219 1.44007 1.51930 0.99829 1.35579 1.19105 1.34397 0.94016 0.91060 0.92071 1.25091 0.98905 0.99709 0.95570 1.70094 1.49630 1.25887 1.08292 0.86387 0.77458 0.83759 0.79759 1.21419 1.21860 1.20412 1.20904 0.93017 0.86354 0.97808 1.22083 0.98455 0.98828 0.97163 1.21873 0.83524 0.97262 0.98009 1.74391 1.12073 1.10344 1.10906 1.82018 0.93751 1.06754 1.22405 0.89118 0.88267 0.88001 0.77688 0.85750 0.91549 0.91946 0.90921 0.91875 0.91131 0.91834 0.92709 0.93185 0.96407 0.90962 0.93727 0.96698 0.93084 0.93068 0.92581 0.91286 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.52 59.85 0.69 0.83 16 2 N -0.36 -2.51 4.03 -67.86 -0.27 -2.78 16 3 C 0.09 0.75 11.32 -16.84 -0.19 0.56 16 4 C -0.09 -1.07 6.70 -83.55 -0.56 -1.63 16 5 C 0.60 8.32 7.68 -12.47 -0.10 8.22 16 6 O -0.54 -8.87 16.29 5.28 0.09 -8.79 16 7 N -0.59 -7.77 2.97 -173.94 -0.52 -8.29 16 8 C 0.08 0.91 6.11 -3.68 -0.02 0.89 16 9 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16 10 C -0.12 -1.38 4.85 -26.69 -0.13 -1.51 16 11 C -0.09 -1.30 1.92 -90.50 -0.17 -1.48 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.07 -1.14 1.74 -90.58 -0.16 -1.30 16 14 C -0.14 -2.66 5.05 -26.61 -0.13 -2.80 16 15 C 0.17 4.25 5.32 -3.71 -0.02 4.23 16 16 N -0.59 -15.16 2.96 -172.32 -0.51 -15.67 16 17 C -0.26 -7.22 9.50 -15.06 -0.14 -7.37 16 18 H 0.06 1.71 7.91 -52.48 -0.42 1.29 16 19 C 0.01 0.20 4.77 -17.43 -0.08 0.11 16 20 N -0.90 -26.73 11.78 55.49 0.65 -26.08 16 21 Si 0.90 22.19 29.60 -169.99 -5.03 17.16 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 26 C -0.13 -2.19 5.04 -26.61 -0.13 -2.33 16 27 C 0.11 1.60 5.20 -3.71 -0.02 1.58 16 28 N -0.20 -2.32 8.77 32.85 0.29 -2.03 16 29 N -0.07 -0.71 13.78 60.35 0.83 0.12 16 30 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.21 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.13 1.39 4.07 -83.89 -0.34 1.04 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.97 6.50 -51.93 -0.34 1.63 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.05 0.76 6.33 -51.93 -0.33 0.43 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.10 1.56 5.58 -51.93 -0.29 1.27 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -34.73 392.35 -8.19 -42.92 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.27 Total: -2.07 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.36 Total: -0.41 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.47 Total: -54.73 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.73 -8.19 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047236343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.141 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds