Wall clock time and date at job start Wed Apr 1 2020 05:52:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34807 * 126.60015 * 2 1
4 4 C 1.36589 * 106.84176 * 180.10855 * 3 2 1
5 5 C 1.47527 * 125.76986 * 179.90118 * 4 3 2
6 6 O 1.21598 * 120.00223 * 7.16601 * 5 4 3
7 7 N 1.34781 * 119.99771 * 187.17708 * 5 4 3
8 8 C 1.46991 * 120.61815 * 6.17476 * 7 5 4
9 9 C 1.53190 * 108.73707 * 126.38943 * 8 7 5
10 10 C 1.53040 * 109.33963 * 54.62857 * 9 8 7
11 11 C 1.53037 * 109.53678 * 298.61883 * 10 9 8
12 12 H 1.09000 * 109.49572 * 301.38276 * 11 10 9
13 13 C 1.52998 * 109.49960 * 181.31680 * 11 10 9
14 14 C 1.53042 * 109.45881 * 180.02562 * 13 11 10
15 15 C 1.53192 * 109.31053 * 178.61280 * 14 13 11
16 16 N 1.46924 * 108.77894 * 54.63245 * 15 14 13
17 17 C 1.36936 * 120.63232 * 126.36782 * 16 15 14
18 18 H 1.08006 * 120.00030 * 211.97817 * 17 16 15
19 19 C 1.38807 * 120.00356 * 31.98133 * 17 16 15
20 20 N 1.31622 * 119.99951 * 21.08301 * 19 17 16
21 21 Si 1.86801 * 120.00481 * 201.08799 * 19 17 16
22 22 H 1.48501 * 109.47367 * 89.99642 * 21 19 17
23 23 H 1.48501 * 109.46994 * 209.99802 * 21 19 17
24 24 H 1.48505 * 109.46902 * 329.99386 * 21 19 17
25 25 C 1.46932 * 118.73731 * 306.39357 * 16 15 14
26 26 C 1.53040 * 109.46319 * 59.99490 * 13 11 10
27 27 C 1.46924 * 120.62759 * 186.16180 * 7 5 4
28 28 N 1.34400 * 108.46012 * 359.63384 * 4 3 2
29 29 N 1.28759 * 109.51978 * 0.22241 * 28 4 3
30 30 H 1.08999 * 109.46945 * 270.27557 * 1 2 3
31 31 H 1.08994 * 109.46645 * 30.27210 * 1 2 3
32 32 H 1.08990 * 109.47247 * 150.27570 * 1 2 3
33 33 H 1.08005 * 126.57469 * 359.96648 * 3 2 1
34 34 H 1.09008 * 109.62898 * 6.60645 * 8 7 5
35 35 H 1.08994 * 109.58527 * 246.15729 * 8 7 5
36 36 H 1.09000 * 109.50158 * 294.65756 * 9 8 7
37 37 H 1.08999 * 109.49717 * 174.59355 * 9 8 7
38 38 H 1.09000 * 109.46226 * 58.63430 * 10 9 8
39 39 H 1.08993 * 109.46114 * 178.59513 * 10 9 8
40 40 H 1.09000 * 109.45743 * 300.02078 * 13 11 10
41 41 H 1.09002 * 109.49717 * 298.55858 * 14 13 11
42 42 H 1.08999 * 109.50287 * 58.66225 * 14 13 11
43 43 H 1.09001 * 109.58962 * 294.84895 * 15 14 13
44 44 H 1.09000 * 109.59114 * 174.41898 * 15 14 13
45 45 H 0.96999 * 120.00844 * 180.02562 * 20 19 17
46 46 H 1.08990 * 109.58373 * 293.81534 * 25 16 15
47 47 H 1.09002 * 109.58139 * 173.39080 * 25 16 15
48 48 H 1.08997 * 109.49551 * 301.34386 * 26 13 11
49 49 H 1.09006 * 109.49146 * 61.40193 * 26 13 11
50 50 H 1.08999 * 109.58946 * 113.83662 * 27 7 5
51 51 H 1.09002 * 109.59073 * 353.41379 * 27 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2688 1.0823 0.0000
4 6 3.5543 0.6205 -0.0025
5 6 4.7705 1.4555 -0.0054
6 8 4.6807 2.6611 0.1255
7 7 5.9812 0.8821 -0.1535
8 6 6.0988 -0.5533 -0.4476
9 6 6.9657 -0.7299 -1.6982
10 6 8.3049 -0.0187 -1.4912
11 6 8.0624 1.4775 -1.2798
12 1 7.5412 1.8874 -2.1449
13 6 9.4037 2.1926 -1.1057
14 6 9.1601 3.6886 -0.8937
15 6 10.5029 4.3959 -0.6852
16 7 11.3835 4.0826 -1.8187
17 6 11.9783 5.0847 -2.5380
18 1 12.1719 4.9511 -3.5921
19 6 12.3323 6.2721 -1.9124
20 7 12.4923 6.3057 -0.6064
21 14 12.5816 7.8227 -2.9240
22 1 11.2939 8.5541 -3.0344
23 1 13.5881 8.6899 -2.2606
24 1 13.0610 7.4566 -4.2810
25 6 11.6135 2.6736 -2.1663
26 6 10.2579 1.9865 -2.3586
27 6 7.2082 1.6799 -0.0244
28 7 3.5238 -0.7231 0.0042
29 7 2.3008 -1.1258 0.0060
30 1 -0.3633 0.0049 1.0277
31 1 -0.3632 0.8875 -0.5180
32 1 -0.3633 -0.8924 -0.5095
33 1 1.9562 2.1161 -0.0005
34 1 5.1088 -0.9726 -0.6272
35 1 6.5659 -1.0619 0.3956
36 1 6.4544 -0.2994 -2.5592
37 1 7.1408 -1.7916 -1.8725
38 1 8.8045 -0.4328 -0.6155
39 1 8.9330 -0.1642 -2.3700
40 1 9.9240 1.7828 -0.2400
41 1 8.6624 4.1039 -1.7700
42 1 8.5320 3.8341 -0.0148
43 1 10.9603 4.0463 0.2403
44 1 10.3443 5.4731 -0.6326
45 1 12.7393 7.1355 -0.1691
46 1 12.1614 2.1836 -1.3616
47 1 12.1876 2.6145 -3.0910
48 1 10.4114 0.9200 -2.5228
49 1 9.7491 2.4179 -3.2207
50 1 7.7657 1.3534 0.8535
51 1 6.9497 2.7341 0.0758
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001047236343.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:04
Heat of formation + Delta-G solvation = 86.218927 kcal
Electronic energy + Delta-G solvation = -31232.424184 eV
Core-core repulsion = 27169.608888 eV
Total energy + Delta-G solvation = -4062.815296 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.61850 -40.09964 -38.30437 -36.70324 -35.17797 -33.96507 -32.32062 -31.61166
-31.15582 -29.78837 -29.22225 -28.21377 -25.84184 -25.19605 -23.42895 -23.15917
-22.57472 -21.91943 -21.23369 -20.26150 -19.49683 -18.99629 -17.74634 -16.78182
-16.63046 -16.55651 -16.04261 -15.23119 -15.04196 -14.72459 -14.52083 -14.30732
-13.94625 -13.87146 -13.78888 -13.58390 -13.40941 -13.33435 -12.99342 -12.92490
-12.77727 -12.45105 -12.17692 -12.06937 -11.70465 -11.32638 -11.24416 -10.98138
-10.88298 -10.82365 -10.64825 -10.55892 -10.41940 -10.30745 -10.10687 -10.05108
-9.91402 -9.75498 -9.64997 -9.33443 -9.17967 -8.57285 -8.37382 -6.53178
-5.72229 -3.15258 0.74929 1.38722 1.61478 2.87055 3.10983 3.43048
3.50115 3.51160 3.84467 3.89797 4.32256 4.42137 4.56925 4.57684
4.71617 4.78056 4.93425 4.96331 5.01721 5.04920 5.20955 5.34238
5.42191 5.52026 5.56442 5.69780 5.73992 5.81899 5.83426 5.88466
5.94487 6.00765 6.08475 6.12095 6.18627 6.23270 6.34030 6.45968
6.48001 6.59206 6.66313 6.76015 6.83910 6.93749 6.99083 7.12272
7.30209 7.43595 7.56390 7.67662 7.89546 8.05233 8.55339 9.29423
9.93457 10.53968 11.35644
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.019844 B = 0.002238 C = 0.002084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1410.690127 B =12510.348577 C =13431.181325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.363 5.363
3 C 0.093 3.907
4 C -0.094 4.094
5 C 0.600 3.400
6 O -0.538 6.538
7 N -0.593 5.593
8 C 0.083 3.917
9 C -0.133 4.133
10 C -0.118 4.118
11 C -0.094 4.094
12 H 0.071 0.929
13 C -0.069 4.069
14 C -0.137 4.137
15 C 0.175 3.825
16 N -0.590 5.590
17 C -0.256 4.256
18 H 0.062 0.938
19 C 0.007 3.993
20 N -0.896 5.896
21 Si 0.897 3.103
22 H -0.287 1.287
23 H -0.292 1.292
24 H -0.279 1.279
25 C 0.145 3.855
26 C -0.126 4.126
27 C 0.115 3.885
28 N -0.204 5.204
29 N -0.070 5.070
30 H 0.090 0.910
31 H 0.099 0.901
32 H 0.101 0.899
33 H 0.206 0.794
34 H 0.126 0.874
35 H 0.066 0.934
36 H 0.062 0.938
37 H 0.072 0.928
38 H 0.063 0.937
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.054 0.946
42 H 0.050 0.950
43 H 0.018 0.982
44 H 0.072 0.928
45 H 0.253 0.747
46 H 0.015 0.985
47 H 0.051 0.949
48 H 0.051 0.949
49 H 0.055 0.945
50 H 0.069 0.931
51 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.400 -16.450 1.751 29.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.148 5.148
3 C -0.063 4.063
4 C -0.233 4.233
5 C 0.386 3.614
6 O -0.415 6.415
7 N -0.324 5.324
8 C -0.040 4.040
9 C -0.171 4.171
10 C -0.155 4.155
11 C -0.113 4.113
12 H 0.089 0.911
13 C -0.088 4.088
14 C -0.176 4.176
15 C 0.049 3.951
16 N -0.313 5.313
17 C -0.386 4.386
18 H 0.079 0.921
19 C -0.193 4.193
20 N -0.539 5.539
21 Si 0.726 3.274
22 H -0.214 1.214
23 H -0.219 1.219
24 H -0.204 1.204
25 C 0.019 3.981
26 C -0.165 4.165
27 C -0.007 4.007
28 N -0.077 5.077
29 N -0.049 5.049
30 H 0.109 0.891
31 H 0.117 0.883
32 H 0.120 0.880
33 H 0.223 0.777
34 H 0.143 0.857
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.091 0.909
38 H 0.081 0.919
39 H 0.089 0.911
40 H 0.082 0.918
41 H 0.073 0.927
42 H 0.068 0.932
43 H 0.036 0.964
44 H 0.090 0.910
45 H 0.063 0.937
46 H 0.033 0.967
47 H 0.069 0.931
48 H 0.069 0.931
49 H 0.074 0.926
50 H 0.087 0.913
51 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -24.394 -17.196 1.941 29.908
hybrid contribution -0.070 1.857 -0.418 1.904
sum -24.464 -15.339 1.523 28.915
Atomic orbital electron populations
1.22223 0.72395 1.05900 1.04882 1.50351 1.09169 1.05666 1.49593
1.23398 0.90049 0.95079 0.97806 1.21529 0.94731 0.90234 1.16784
1.16813 0.81616 0.86061 0.76958 1.90827 1.86018 1.13315 1.51304
1.47937 1.05301 1.10422 1.68745 1.22554 1.04045 0.80106 0.97337
1.21924 0.96584 1.00757 0.97871 1.21665 0.96529 0.94988 1.02340
1.21583 0.96692 0.95438 0.97583 0.91096 1.21004 0.93263 0.95967
0.98568 1.22267 1.00449 0.94598 1.00297 1.20651 0.86251 0.98982
0.89219 1.44007 1.51930 0.99829 1.35579 1.19105 1.34397 0.94016
0.91060 0.92071 1.25091 0.98905 0.99709 0.95570 1.70094 1.49630
1.25887 1.08292 0.86387 0.77458 0.83759 0.79759 1.21419 1.21860
1.20412 1.20904 0.93017 0.86354 0.97808 1.22083 0.98455 0.98828
0.97163 1.21873 0.83524 0.97262 0.98009 1.74391 1.12073 1.10344
1.10906 1.82018 0.93751 1.06754 1.22405 0.89118 0.88267 0.88001
0.77688 0.85750 0.91549 0.91946 0.90921 0.91875 0.91131 0.91834
0.92709 0.93185 0.96407 0.90962 0.93727 0.96698 0.93084 0.93068
0.92581 0.91286 0.88353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.14 11.52 59.85 0.69 0.83 16
2 N -0.36 -2.51 4.03 -67.86 -0.27 -2.78 16
3 C 0.09 0.75 11.32 -16.84 -0.19 0.56 16
4 C -0.09 -1.07 6.70 -83.55 -0.56 -1.63 16
5 C 0.60 8.32 7.68 -12.47 -0.10 8.22 16
6 O -0.54 -8.87 16.29 5.28 0.09 -8.79 16
7 N -0.59 -7.77 2.97 -173.94 -0.52 -8.29 16
8 C 0.08 0.91 6.11 -3.68 -0.02 0.89 16
9 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16
10 C -0.12 -1.38 4.85 -26.69 -0.13 -1.51 16
11 C -0.09 -1.30 1.92 -90.50 -0.17 -1.48 16
12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
13 C -0.07 -1.14 1.74 -90.58 -0.16 -1.30 16
14 C -0.14 -2.66 5.05 -26.61 -0.13 -2.80 16
15 C 0.17 4.25 5.32 -3.71 -0.02 4.23 16
16 N -0.59 -15.16 2.96 -172.32 -0.51 -15.67 16
17 C -0.26 -7.22 9.50 -15.06 -0.14 -7.37 16
18 H 0.06 1.71 7.91 -52.48 -0.42 1.29 16
19 C 0.01 0.20 4.77 -17.43 -0.08 0.11 16
20 N -0.90 -26.73 11.78 55.49 0.65 -26.08 16
21 Si 0.90 22.19 29.60 -169.99 -5.03 17.16 16
22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
25 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16
26 C -0.13 -2.19 5.04 -26.61 -0.13 -2.33 16
27 C 0.11 1.60 5.20 -3.71 -0.02 1.58 16
28 N -0.20 -2.32 8.77 32.85 0.29 -2.03 16
29 N -0.07 -0.71 13.78 60.35 0.83 0.12 16
30 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16
31 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16
32 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16
33 H 0.21 1.05 8.06 -52.48 -0.42 0.63 16
34 H 0.13 1.39 4.07 -83.89 -0.34 1.04 16
35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16
40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16
43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
44 H 0.07 1.97 6.50 -51.93 -0.34 1.63 16
45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16
48 H 0.05 0.76 6.33 -51.93 -0.33 0.43 16
49 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
51 H 0.10 1.56 5.58 -51.93 -0.29 1.27 16
LS Contribution 392.35 15.07 5.91 5.91
Total: -1.00 -34.73 392.35 -8.19 -42.92
By element:
Atomic # 1 Polarization: 6.20 SS G_CDS: -8.27 Total: -2.07 kcal
Atomic # 6 Polarization: 0.95 SS G_CDS: -1.36 Total: -0.41 kcal
Atomic # 7 Polarization: -55.20 SS G_CDS: 0.47 Total: -54.73 kcal
Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -34.73 -8.19 -42.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047236343.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.141 kcal
(2) G-P(sol) polarization free energy of solvation -34.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds