Wall clock time and date at job start Wed Apr 1 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34807 * 126.60015 * 2 1 4 4 C 1.36589 * 106.84176 * 180.10855 * 3 2 1 5 5 C 1.47527 * 125.76986 * 179.90118 * 4 3 2 6 6 O 1.21598 * 120.00223 * 7.16601 * 5 4 3 7 7 N 1.34781 * 119.99771 * 187.17708 * 5 4 3 8 8 C 1.46991 * 120.61815 * 6.17476 * 7 5 4 9 9 C 1.53190 * 108.73707 * 126.38943 * 8 7 5 10 10 C 1.53040 * 109.33963 * 54.62857 * 9 8 7 11 11 C 1.53037 * 109.53678 * 298.61883 * 10 9 8 12 12 H 1.09000 * 109.49572 * 301.38276 * 11 10 9 13 13 C 1.52998 * 109.49960 * 181.31680 * 11 10 9 14 14 C 1.53042 * 109.45881 * 180.02562 * 13 11 10 15 15 C 1.53192 * 109.31053 * 178.61280 * 14 13 11 16 16 N 1.46924 * 108.77894 * 54.63245 * 15 14 13 17 17 C 1.36936 * 120.63232 * 126.36782 * 16 15 14 18 18 H 1.08006 * 120.00030 * 211.97817 * 17 16 15 19 19 C 1.38807 * 120.00356 * 31.98133 * 17 16 15 20 20 N 1.31622 * 119.99951 * 21.08301 * 19 17 16 21 21 Si 1.86801 * 120.00481 * 201.08799 * 19 17 16 22 22 H 1.48501 * 109.47367 * 89.99642 * 21 19 17 23 23 H 1.48501 * 109.46994 * 209.99802 * 21 19 17 24 24 H 1.48505 * 109.46902 * 329.99386 * 21 19 17 25 25 C 1.46932 * 118.73731 * 306.39357 * 16 15 14 26 26 C 1.53040 * 109.46319 * 59.99490 * 13 11 10 27 27 C 1.46924 * 120.62759 * 186.16180 * 7 5 4 28 28 N 1.34400 * 108.46012 * 359.63384 * 4 3 2 29 29 N 1.28759 * 109.51978 * 0.22241 * 28 4 3 30 30 H 1.08999 * 109.46945 * 270.27557 * 1 2 3 31 31 H 1.08994 * 109.46645 * 30.27210 * 1 2 3 32 32 H 1.08990 * 109.47247 * 150.27570 * 1 2 3 33 33 H 1.08005 * 126.57469 * 359.96648 * 3 2 1 34 34 H 1.09008 * 109.62898 * 6.60645 * 8 7 5 35 35 H 1.08994 * 109.58527 * 246.15729 * 8 7 5 36 36 H 1.09000 * 109.50158 * 294.65756 * 9 8 7 37 37 H 1.08999 * 109.49717 * 174.59355 * 9 8 7 38 38 H 1.09000 * 109.46226 * 58.63430 * 10 9 8 39 39 H 1.08993 * 109.46114 * 178.59513 * 10 9 8 40 40 H 1.09000 * 109.45743 * 300.02078 * 13 11 10 41 41 H 1.09002 * 109.49717 * 298.55858 * 14 13 11 42 42 H 1.08999 * 109.50287 * 58.66225 * 14 13 11 43 43 H 1.09001 * 109.58962 * 294.84895 * 15 14 13 44 44 H 1.09000 * 109.59114 * 174.41898 * 15 14 13 45 45 H 0.96999 * 120.00844 * 180.02562 * 20 19 17 46 46 H 1.08990 * 109.58373 * 293.81534 * 25 16 15 47 47 H 1.09002 * 109.58139 * 173.39080 * 25 16 15 48 48 H 1.08997 * 109.49551 * 301.34386 * 26 13 11 49 49 H 1.09006 * 109.49146 * 61.40193 * 26 13 11 50 50 H 1.08999 * 109.58946 * 113.83662 * 27 7 5 51 51 H 1.09002 * 109.59073 * 353.41379 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0823 0.0000 4 6 3.5543 0.6205 -0.0025 5 6 4.7705 1.4555 -0.0054 6 8 4.6807 2.6611 0.1255 7 7 5.9812 0.8821 -0.1535 8 6 6.0988 -0.5533 -0.4476 9 6 6.9657 -0.7299 -1.6982 10 6 8.3049 -0.0187 -1.4912 11 6 8.0624 1.4775 -1.2798 12 1 7.5412 1.8874 -2.1449 13 6 9.4037 2.1926 -1.1057 14 6 9.1601 3.6886 -0.8937 15 6 10.5029 4.3959 -0.6852 16 7 11.3835 4.0826 -1.8187 17 6 11.9783 5.0847 -2.5380 18 1 12.1719 4.9511 -3.5921 19 6 12.3323 6.2721 -1.9124 20 7 12.4923 6.3057 -0.6064 21 14 12.5816 7.8227 -2.9240 22 1 11.2939 8.5541 -3.0344 23 1 13.5881 8.6899 -2.2606 24 1 13.0610 7.4566 -4.2810 25 6 11.6135 2.6736 -2.1663 26 6 10.2579 1.9865 -2.3586 27 6 7.2082 1.6799 -0.0244 28 7 3.5238 -0.7231 0.0042 29 7 2.3008 -1.1258 0.0060 30 1 -0.3633 0.0049 1.0277 31 1 -0.3632 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5095 33 1 1.9562 2.1161 -0.0005 34 1 5.1088 -0.9726 -0.6272 35 1 6.5659 -1.0619 0.3956 36 1 6.4544 -0.2994 -2.5592 37 1 7.1408 -1.7916 -1.8725 38 1 8.8045 -0.4328 -0.6155 39 1 8.9330 -0.1642 -2.3700 40 1 9.9240 1.7828 -0.2400 41 1 8.6624 4.1039 -1.7700 42 1 8.5320 3.8341 -0.0148 43 1 10.9603 4.0463 0.2403 44 1 10.3443 5.4731 -0.6326 45 1 12.7393 7.1355 -0.1691 46 1 12.1614 2.1836 -1.3616 47 1 12.1876 2.6145 -3.0910 48 1 10.4114 0.9200 -2.5228 49 1 9.7491 2.4179 -3.2207 50 1 7.7657 1.3534 0.8535 51 1 6.9497 2.7341 0.0758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047236343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:03 Heat of formation + Delta-G solvation = 64.151185 kcal Electronic energy + Delta-G solvation = -31233.381113 eV Core-core repulsion = 27169.608888 eV Total energy + Delta-G solvation = -4063.772225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.30596 -41.15698 -39.66053 -38.06245 -35.92403 -35.35776 -33.69779 -32.94175 -32.09690 -31.47131 -30.61051 -28.77332 -27.00898 -26.76930 -24.70877 -24.32172 -23.36560 -23.21427 -22.56510 -21.41890 -20.68845 -20.38863 -18.70524 -18.46829 -17.55610 -17.28219 -16.93361 -16.76306 -16.15317 -15.83601 -15.70287 -15.52796 -15.32605 -15.11815 -14.86687 -14.79804 -14.48310 -14.17816 -14.16263 -13.98877 -13.96779 -13.72533 -13.50665 -13.18144 -13.01755 -12.85504 -12.67718 -12.49400 -12.33752 -12.24062 -12.03083 -11.90359 -11.80837 -11.58568 -11.51286 -11.38040 -11.32227 -11.07006 -10.78456 -10.71729 -10.53165 -10.39829 -9.59750 -8.62682 -7.87951 -5.34826 0.12948 0.54647 1.15505 1.44321 1.46828 1.55298 1.92590 2.16636 2.50820 3.08788 3.24371 3.41156 3.69001 3.74039 3.79684 3.86419 3.94233 3.97738 4.13126 4.24160 4.25472 4.36574 4.38464 4.46023 4.48703 4.57431 4.61736 4.65372 4.69743 4.75858 4.79042 4.83155 4.92180 4.94270 5.05300 5.08082 5.13484 5.17326 5.21425 5.33526 5.37756 5.42221 5.43665 5.45578 5.49090 5.56177 5.63928 5.68144 5.78625 6.32542 6.40978 6.80734 7.07407 7.15550 7.87510 8.42347 9.17348 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002238 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.690127 B =12510.348577 C =13431.181325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.348 5.348 3 C 0.109 3.891 4 C -0.123 4.123 5 C 0.595 3.405 6 O -0.575 6.575 7 N -0.594 5.594 8 C 0.082 3.918 9 C -0.126 4.126 10 C -0.114 4.114 11 C -0.080 4.080 12 H 0.058 0.942 13 C -0.061 4.061 14 C -0.123 4.123 15 C 0.182 3.818 16 N -0.610 5.610 17 C -0.267 4.267 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.139 3.861 26 C -0.112 4.112 27 C 0.117 3.883 28 N -0.218 5.218 29 N -0.090 5.090 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.061 0.939 43 H -0.002 1.002 44 H 0.034 0.966 45 H 0.250 0.750 46 H 0.013 0.987 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.483 -18.351 0.882 32.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.050 4.050 4 C -0.262 4.262 5 C 0.383 3.617 6 O -0.455 6.455 7 N -0.325 5.325 8 C -0.040 4.040 9 C -0.164 4.164 10 C -0.151 4.151 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.080 4.080 14 C -0.162 4.162 15 C 0.056 3.944 16 N -0.334 5.334 17 C -0.397 4.397 18 H 0.079 0.921 19 C -0.243 4.243 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.014 3.986 26 C -0.151 4.151 27 C -0.005 4.005 28 N -0.091 5.091 29 N -0.070 5.070 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.130 0.870 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.508 -19.169 1.049 32.730 hybrid contribution 0.486 2.414 -0.119 2.466 sum -26.022 -16.755 0.930 30.963 Atomic orbital electron populations 1.22743 0.69223 1.07859 1.06640 1.50684 1.10706 1.04433 1.47455 1.23794 0.89111 0.96339 0.95726 1.21365 0.94895 0.90418 1.19546 1.17173 0.82466 0.85920 0.76168 1.90794 1.86656 1.14874 1.53156 1.48025 1.04843 1.11197 1.68415 1.22694 1.04577 0.78750 0.98020 1.21889 0.95423 1.02021 0.97092 1.21645 0.97530 0.92865 1.03061 1.21390 0.94593 0.96981 0.96983 0.92365 1.20907 0.94860 0.93828 0.98386 1.22063 0.97382 0.96441 1.00288 1.20468 0.88403 0.97208 0.88310 1.44291 1.52254 1.01274 1.35533 1.19421 1.33850 0.95095 0.91376 0.92116 1.25869 0.99305 1.02559 0.96614 1.70225 1.51142 1.26273 1.09880 0.85351 0.77099 0.79840 0.78694 1.21348 1.21982 1.19111 1.21095 0.95536 0.84454 0.97494 1.21938 0.95760 1.00374 0.97049 1.21730 0.84182 0.96291 0.98343 1.74323 1.12929 1.10342 1.11477 1.81924 0.93820 1.08114 1.23143 0.87382 0.85385 0.87047 0.74986 0.85541 0.90673 0.92673 0.88442 0.90892 0.90454 0.91499 0.93887 0.91999 0.98391 0.94714 0.94121 0.96890 0.93182 0.89421 0.93319 0.90500 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.01 11.52 127.77 1.47 1.48 16 2 N -0.35 -4.00 4.03 -368.61 -1.49 -5.48 16 3 C 0.11 1.54 11.32 83.85 0.95 2.49 16 4 C -0.12 -2.69 6.70 40.82 0.27 -2.41 16 5 C 0.60 16.46 7.68 86.69 0.67 17.13 16 6 O -0.58 -19.30 16.29 -4.02 -0.07 -19.37 16 7 N -0.59 -15.21 2.97 -822.49 -2.45 -17.66 16 8 C 0.08 1.67 6.11 86.35 0.53 2.19 16 9 C -0.13 -2.29 6.08 30.67 0.19 -2.10 16 10 C -0.11 -2.33 4.85 30.62 0.15 -2.18 16 11 C -0.08 -2.12 1.92 -10.72 -0.02 -2.14 16 12 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 13 C -0.06 -1.95 1.74 -10.77 -0.02 -1.97 16 14 C -0.12 -4.87 5.05 30.67 0.15 -4.71 16 15 C 0.18 9.21 5.32 86.36 0.46 9.67 16 16 N -0.61 -32.01 2.96 -699.10 -2.07 -34.08 16 17 C -0.27 -15.36 9.50 84.03 0.80 -14.56 16 18 H 0.06 3.43 7.91 -2.91 -0.02 3.41 16 19 C -0.05 -2.75 4.77 84.86 0.40 -2.34 16 20 N -0.93 -57.40 11.78 21.65 0.26 -57.14 16 21 Si 0.96 46.55 29.60 68.60 2.03 48.58 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.14 5.95 6.52 86.36 0.56 6.51 16 26 C -0.11 -3.73 5.04 30.67 0.15 -3.58 16 27 C 0.12 3.20 5.20 86.36 0.45 3.65 16 28 N -0.22 -4.73 8.77 -50.00 -0.44 -5.17 16 29 N -0.09 -1.70 13.78 37.02 0.51 -1.19 16 30 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.13 2.64 4.07 -43.74 -0.18 2.47 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.51 6.33 -2.39 -0.02 1.50 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 2.29 6.50 -2.39 -0.02 2.27 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 44 H 0.03 1.98 6.50 -2.39 -0.02 1.97 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 48 H 0.09 2.32 6.33 -2.39 -0.02 2.30 16 49 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.07 2.41 5.58 -2.39 -0.01 2.40 16 Total: -1.00 -78.61 392.35 4.21 -74.39 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.76 Total: 10.01 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 7.17 Total: 7.11 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.68 Total: -120.72 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.07 Total: -19.37 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -78.61 4.21 -74.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047236343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.543 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds