Wall clock time and date at job start Wed Apr 1 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34586 * 125.74952 * 2 1 4 4 N 1.30863 * 107.62720 * 180.02562 * 3 2 1 5 5 C 1.34558 * 107.26950 * 359.97438 * 4 3 2 6 6 C 1.47864 * 126.04875 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00272 * 187.65083 * 6 5 4 8 8 N 1.34779 * 120.00263 * 7.65391 * 6 5 4 9 9 C 1.46996 * 120.61017 * 6.30600 * 8 6 5 10 10 C 1.53190 * 108.73705 * 126.39082 * 9 8 6 11 11 C 1.53033 * 109.34305 * 54.61925 * 10 9 8 12 12 C 1.53037 * 109.54084 * 298.61991 * 11 10 9 13 13 H 1.09005 * 109.50005 * 301.38368 * 12 11 10 14 14 C 1.52998 * 109.50205 * 181.31333 * 12 11 10 15 15 C 1.53046 * 109.45968 * 180.02562 * 14 12 11 16 16 C 1.53188 * 109.31161 * 178.61688 * 15 14 12 17 17 N 1.46926 * 108.77649 * 54.63613 * 16 15 14 18 18 C 1.36939 * 120.62998 * 126.37316 * 17 16 15 19 19 H 1.08000 * 119.99528 * 211.00655 * 18 17 16 20 20 C 1.38808 * 120.00131 * 31.00731 * 18 17 16 21 21 N 1.31620 * 120.00217 * 19.80942 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 199.81690 * 20 18 17 23 23 H 1.48502 * 109.47445 * 89.99611 * 22 20 18 24 24 H 1.48496 * 109.47401 * 209.99956 * 22 20 18 25 25 H 1.48504 * 109.46996 * 329.99739 * 22 20 18 26 26 C 1.46931 * 118.73913 * 306.38867 * 17 16 15 27 27 C 1.53042 * 109.45858 * 60.00365 * 14 12 11 28 28 C 1.46927 * 120.63248 * 186.28452 * 8 6 5 29 29 N 1.28852 * 125.74846 * 180.31045 * 2 1 3 30 30 H 1.09000 * 109.47081 * 90.00375 * 1 2 3 31 31 H 1.09002 * 109.47306 * 210.00492 * 1 2 3 32 32 H 1.08999 * 109.47250 * 329.99802 * 1 2 3 33 33 H 1.08005 * 126.18227 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.63443 * 6.60000 * 9 8 6 35 35 H 1.09007 * 109.57965 * 246.14395 * 9 8 6 36 36 H 1.09004 * 109.49920 * 294.64873 * 10 9 8 37 37 H 1.09001 * 109.49779 * 174.58988 * 10 9 8 38 38 H 1.09007 * 109.46494 * 58.63901 * 11 10 9 39 39 H 1.09006 * 109.46496 * 178.59725 * 11 10 9 40 40 H 1.08991 * 109.46115 * 300.02352 * 14 12 11 41 41 H 1.08999 * 109.49837 * 298.56718 * 15 14 12 42 42 H 1.09003 * 109.49416 * 58.66249 * 15 14 12 43 43 H 1.09006 * 109.58845 * 294.84710 * 16 15 14 44 44 H 1.09001 * 109.59058 * 174.42387 * 16 15 14 45 45 H 0.97002 * 119.99840 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58483 * 293.82529 * 26 17 16 47 47 H 1.09002 * 109.58533 * 173.39369 * 26 17 16 48 48 H 1.09001 * 109.49457 * 301.33654 * 27 14 12 49 49 H 1.08993 * 109.49870 * 61.39745 * 27 14 12 50 50 H 1.08998 * 109.58534 * 113.84350 * 28 8 6 51 51 H 1.08999 * 109.58816 * 353.41440 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 -0.0006 5 6 3.4750 -0.6602 -0.0003 6 6 4.6574 -1.5480 -0.0013 7 8 4.5169 -2.7473 -0.1411 8 7 5.8911 -1.0276 0.1529 9 6 6.0687 0.3988 0.4603 10 6 6.9409 0.5273 1.7131 11 6 8.2490 -0.2378 1.5006 12 6 7.9440 -1.7205 1.2754 13 1 7.4049 -2.1160 2.1363 14 6 9.2542 -2.4899 1.0956 15 6 8.9480 -3.9724 0.8698 16 6 10.2599 -4.7338 0.6560 17 7 11.1516 -4.4682 1.7931 18 6 11.7028 -5.5010 2.5035 19 1 11.9151 -5.3799 3.5555 20 6 11.9886 -6.7034 1.8717 21 7 12.1067 -6.7466 0.5615 22 14 12.2052 -8.2604 2.8808 23 1 10.8927 -8.9382 3.0333 24 1 13.1546 -9.1698 2.1902 25 1 12.7406 -7.9110 4.2211 26 6 11.4405 -3.0734 2.1537 27 6 10.1148 -2.3315 2.3512 28 6 7.0835 -1.8753 0.0174 29 7 2.2178 -1.0457 -0.0057 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9163 2.1191 -0.0004 34 1 5.0971 0.8578 0.6429 35 1 6.5579 0.8950 -0.3780 36 1 6.4108 0.1109 2.5697 37 1 7.1603 1.5790 1.8972 38 1 8.7668 0.1628 0.6290 39 1 8.8818 -0.1270 2.3813 40 1 9.7922 -2.0946 0.2342 41 1 8.4321 -4.3743 1.7418 42 1 8.3153 -4.0831 -0.0108 43 1 10.7328 -4.3953 -0.2660 44 1 10.0561 -5.8027 0.5934 45 1 12.3061 -7.5870 0.1200 46 1 12.0095 -2.5996 1.3538 47 1 12.0154 -3.0469 3.0793 48 1 10.3129 -1.2739 2.5253 49 1 9.5873 -2.7488 3.2089 50 1 7.6553 -1.5645 -0.8570 51 1 6.7810 -2.9167 -0.0925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047237058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:02 Heat of formation + Delta-G solvation = 84.848481 kcal Electronic energy + Delta-G solvation = -31280.337615 eV Core-core repulsion = 27217.462892 eV Total energy + Delta-G solvation = -4062.874723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.84297 -40.16065 -38.30060 -36.68316 -35.13256 -33.92579 -32.32624 -32.12140 -31.41285 -29.76016 -29.32925 -28.16546 -25.87049 -25.18732 -23.73859 -23.20353 -22.57887 -21.85001 -21.22910 -20.20168 -19.47795 -18.97782 -17.76481 -17.20766 -16.82479 -16.60130 -16.29089 -15.24690 -15.16778 -14.69343 -14.53030 -14.26827 -13.96387 -13.79585 -13.73912 -13.55934 -13.37232 -13.31526 -12.97151 -12.89676 -12.77052 -12.36090 -12.11158 -11.91317 -11.37510 -11.29324 -11.21941 -10.89922 -10.86245 -10.81780 -10.59887 -10.53830 -10.34417 -10.29972 -10.07559 -10.03159 -9.94626 -9.83792 -9.70129 -9.31604 -9.16600 -8.57342 -8.36153 -6.52403 -5.70241 -3.13014 1.09744 1.72070 1.78189 2.78725 3.19084 3.44650 3.51599 3.52461 3.71461 3.91066 4.25803 4.43641 4.57944 4.58420 4.74540 4.83191 4.97307 5.01911 5.10278 5.35771 5.39727 5.45623 5.53617 5.58076 5.68313 5.75607 5.76569 5.83160 5.87375 5.94910 5.95617 6.05737 6.11718 6.19019 6.20095 6.30132 6.35411 6.48397 6.50400 6.63093 6.68287 6.77597 6.85930 6.95254 7.00886 7.13381 7.27563 7.47696 7.61879 7.72223 7.90410 8.07829 8.56625 9.31340 9.95368 10.54944 11.37935 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.002248 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.274326 B =12452.502905 C =13375.524829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.305 5.305 3 C 0.188 3.812 4 N -0.482 5.482 5 C 0.153 3.847 6 C 0.610 3.390 7 O -0.518 6.518 8 N -0.589 5.589 9 C 0.078 3.922 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.094 4.094 13 H 0.071 0.929 14 C -0.069 4.069 15 C -0.138 4.138 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.062 0.938 20 C 0.005 3.995 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.126 4.126 28 C 0.116 3.884 29 N -0.252 5.252 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.227 0.773 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.017 0.983 44 H 0.075 0.925 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.338 22.746 -1.578 32.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.100 5.100 3 C -0.106 4.106 4 N -0.208 5.208 5 C -0.127 4.127 6 C 0.393 3.607 7 O -0.390 6.390 8 N -0.321 5.321 9 C -0.044 4.044 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.113 4.113 13 H 0.089 0.911 14 C -0.088 4.088 15 C -0.177 4.177 16 C 0.049 3.951 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.542 5.542 22 Si 0.728 3.272 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.019 3.981 27 C -0.165 4.165 28 C -0.005 4.005 29 N -0.091 5.091 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.243 0.757 34 H 0.151 0.849 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.271 21.453 -1.774 31.700 hybrid contribution -0.177 -0.444 0.411 0.630 sum -23.448 21.010 -1.363 31.513 Atomic orbital electron populations 1.22275 0.72133 1.06080 1.05098 1.47391 1.09393 1.03836 1.49426 1.26663 0.86155 0.96054 1.01746 1.71092 1.19323 1.09465 1.20925 1.23819 0.92178 0.89287 1.07424 1.16361 0.80924 0.85597 0.77830 1.90851 1.84918 1.13812 1.49461 1.47856 1.04682 1.10999 1.68600 1.22677 1.04406 0.80315 0.97026 1.21928 0.96717 1.00522 0.97960 1.21668 0.96730 0.94835 1.02293 1.21590 0.96739 0.95482 0.97509 0.91064 1.21004 0.93480 0.95761 0.98541 1.22279 1.00414 0.94694 1.00315 1.20670 0.86394 0.99048 0.89027 1.44020 1.52027 0.99890 1.35469 1.19126 1.36166 0.91780 0.91326 0.92017 1.25078 0.99432 0.99411 0.95495 1.70079 1.51179 1.25232 1.07663 0.86364 0.77504 0.83705 0.79646 1.21431 1.21856 1.20445 1.20902 0.93040 0.86389 0.97737 1.22083 0.98481 0.98808 0.97151 1.21898 0.84248 0.96285 0.98093 1.74390 1.02811 1.13182 1.18688 0.89048 0.88078 0.87890 0.75692 0.84853 0.91712 0.92021 0.90985 0.91877 0.91154 0.91814 0.92704 0.93175 0.96443 0.90650 0.93730 0.96699 0.93095 0.93072 0.92573 0.91119 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.14 11.38 59.85 0.68 0.82 16 2 N -0.31 -2.19 3.72 -69.39 -0.26 -2.45 16 3 C 0.19 1.14 12.62 -90.49 -1.14 0.00 16 4 N -0.48 -4.85 7.85 -12.36 -0.10 -4.95 16 5 C 0.15 2.03 7.65 -156.35 -1.20 0.84 16 6 C 0.61 9.64 7.70 -12.32 -0.09 9.54 16 7 O -0.52 -10.00 16.51 5.32 0.09 -9.91 16 8 N -0.59 -8.13 2.97 -173.81 -0.52 -8.64 16 9 C 0.08 0.85 6.11 -3.67 -0.02 0.83 16 10 C -0.13 -1.37 6.08 -26.62 -0.16 -1.53 16 11 C -0.12 -1.38 4.85 -26.70 -0.13 -1.51 16 12 C -0.09 -1.34 1.92 -90.50 -0.17 -1.51 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.07 -1.16 1.74 -90.58 -0.16 -1.31 16 15 C -0.14 -2.75 5.05 -26.61 -0.13 -2.88 16 16 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 17 N -0.59 -15.33 2.97 -172.31 -0.51 -15.84 16 18 C -0.25 -7.23 9.53 -15.06 -0.14 -7.37 16 19 H 0.06 1.74 7.90 -52.49 -0.41 1.32 16 20 C 0.01 0.15 4.81 -17.43 -0.08 0.06 16 21 N -0.90 -27.01 11.61 55.49 0.64 -26.36 16 22 Si 0.90 22.44 29.60 -169.99 -5.03 17.41 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 27 C -0.13 -2.22 5.04 -26.61 -0.13 -2.35 16 28 C 0.12 1.68 5.20 -3.71 -0.02 1.67 16 29 N -0.25 -3.13 12.09 32.07 0.39 -2.74 16 30 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.23 0.11 8.06 -52.48 -0.42 -0.31 16 34 H 0.13 1.41 4.10 -62.00 -0.25 1.16 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.93 6.50 -51.93 -0.34 0.59 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 2.09 6.38 -51.93 -0.33 1.76 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 48 H 0.05 0.76 6.33 -51.93 -0.33 0.44 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.10 1.64 5.58 -51.93 -0.29 1.35 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -37.07 391.56 -10.52 -47.59 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.17 Total: -2.71 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.96 Total: 2.70 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.35 Total: -60.98 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.07 -10.52 -47.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047237058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.440 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds