Wall clock time and date at job start Wed Apr 1 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34582 * 125.74609 * 2 1 4 4 N 1.30870 * 107.62288 * 180.02562 * 3 2 1 5 5 C 1.34548 * 107.26871 * 359.97438 * 4 3 2 6 6 C 1.47873 * 126.04554 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99744 * 172.54621 * 6 5 4 8 8 N 1.34775 * 119.99972 * 352.53885 * 6 5 4 9 9 C 1.46918 * 120.63192 * 353.40029 * 8 6 5 10 10 C 1.53193 * 108.77244 * 233.62352 * 9 8 6 11 11 C 1.53039 * 109.34039 * 305.38080 * 10 9 8 12 12 C 1.53033 * 109.53968 * 61.31582 * 11 10 9 13 13 H 1.09001 * 109.49952 * 58.65352 * 12 11 10 14 14 C 1.53001 * 109.49988 * 178.71645 * 12 11 10 15 15 C 1.53036 * 109.45914 * 299.93835 * 14 12 11 16 16 C 1.53192 * 109.31435 * 178.62671 * 15 14 12 17 17 N 1.46927 * 108.77548 * 54.62976 * 16 15 14 18 18 C 1.36933 * 120.63014 * 126.37193 * 17 16 15 19 19 H 1.08000 * 120.00126 * 330.42799 * 18 17 16 20 20 C 1.38815 * 120.00414 * 150.42597 * 18 17 16 21 21 N 1.31619 * 119.99826 * 342.83036 * 20 18 17 22 22 Si 1.86798 * 120.00148 * 162.82646 * 20 18 17 23 23 H 1.48496 * 109.46990 * 180.02562 * 22 20 18 24 24 H 1.48491 * 109.47428 * 60.00267 * 22 20 18 25 25 H 1.48504 * 109.46790 * 300.00157 * 22 20 18 26 26 C 1.46921 * 118.74014 * 306.64648 * 17 16 15 27 27 C 1.52761 * 109.00793 * 53.30875 * 26 17 16 28 28 C 1.46930 * 120.62964 * 173.41146 * 8 6 5 29 29 N 1.28845 * 125.74511 * 180.31550 * 2 1 3 30 30 H 1.08994 * 109.47328 * 90.00280 * 1 2 3 31 31 H 1.09005 * 109.46892 * 210.00210 * 1 2 3 32 32 H 1.09000 * 109.47151 * 329.99947 * 1 2 3 33 33 H 1.08002 * 126.19043 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.58778 * 353.40832 * 9 8 6 35 35 H 1.08999 * 109.58987 * 113.69590 * 9 8 6 36 36 H 1.09001 * 109.50000 * 65.31456 * 10 9 8 37 37 H 1.09006 * 109.49823 * 185.37802 * 10 9 8 38 38 H 1.09004 * 109.42879 * 301.30945 * 11 10 9 39 39 H 1.09001 * 109.48348 * 181.35633 * 11 10 9 40 40 H 1.09000 * 109.45761 * 59.90594 * 14 12 11 41 41 H 1.08994 * 109.50087 * 58.67429 * 15 14 12 42 42 H 1.09004 * 109.52449 * 298.59204 * 15 14 12 43 43 H 1.09006 * 109.58324 * 294.84449 * 16 15 14 44 44 H 1.09001 * 109.59214 * 174.41968 * 16 15 14 45 45 H 0.97005 * 119.99723 * 353.86844 * 21 20 18 46 46 H 1.08999 * 109.59117 * 173.14311 * 26 17 16 47 47 H 1.09009 * 109.58800 * 293.56939 * 26 17 16 48 48 H 1.09007 * 109.56335 * 185.55687 * 27 26 17 49 49 H 1.08998 * 109.35918 * 65.49926 * 27 26 17 50 50 H 1.09001 * 109.58570 * 6.58431 * 28 8 6 51 51 H 1.09001 * 109.70576 * 246.23432 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 -0.0006 5 6 3.4750 -0.6601 -0.0003 6 6 4.6575 -1.5480 -0.0002 7 8 4.5168 -2.7476 0.1365 8 7 5.8912 -1.0271 -0.1520 9 6 6.0693 0.3979 -0.4620 10 6 6.9449 0.5247 -1.7126 11 6 8.2530 -0.2394 -1.4950 12 6 7.9480 -1.7215 -1.2663 13 1 7.4117 -2.1197 -2.1276 14 6 9.2581 -2.4898 -1.0807 15 6 10.1215 -2.3357 -2.3348 16 6 11.4464 -3.0775 -2.1321 17 7 11.1572 -4.4707 -1.7659 18 6 11.7097 -5.5065 -2.4709 19 1 11.9451 -5.3824 -3.5176 20 6 11.9674 -6.7159 -1.8402 21 7 12.0066 -6.7776 -0.5260 22 14 12.2583 -8.2559 -2.8566 23 1 12.5090 -9.4063 -1.9516 24 1 13.4365 -8.0526 -3.7373 25 1 11.0601 -8.5333 -3.6889 26 6 10.2590 -4.7314 -0.6328 27 6 8.9517 -3.9712 -0.8490 28 6 7.0838 -1.8737 -0.0107 29 7 2.2177 -1.0457 -0.0058 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9164 2.1191 0.0004 34 1 5.0977 0.8555 -0.6483 35 1 6.5532 0.8969 0.3776 36 1 6.4179 0.1058 -2.5698 37 1 7.1639 1.5762 -1.8984 38 1 8.7679 0.1642 -0.6231 39 1 8.8881 -0.1307 -2.3742 40 1 9.7941 -2.0908 -0.2196 41 1 10.3198 -1.2788 -2.5124 42 1 9.5966 -2.7565 -3.1925 43 1 12.0140 -2.6000 -1.3332 44 1 12.0232 -3.0549 -3.0567 45 1 11.9444 -5.9648 -0.0003 46 1 10.0524 -5.7997 -0.5686 47 1 10.7277 -4.3916 0.2908 48 1 8.3175 -4.0781 0.0311 49 1 8.4376 -4.3769 -1.7202 50 1 6.7815 -2.9150 0.1009 51 1 7.6535 -1.5629 0.8650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047237059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:05 Heat of formation + Delta-G solvation = 61.513154 kcal Electronic energy + Delta-G solvation = -31340.530797 eV Core-core repulsion = 27276.644178 eV Total energy + Delta-G solvation = -4063.886618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.51573 -41.34817 -39.87733 -38.26404 -36.11384 -35.42639 -33.71248 -32.98970 -32.82624 -31.56754 -30.68920 -28.85666 -26.93662 -26.82882 -24.76736 -24.63681 -23.62697 -23.01537 -22.68739 -21.40578 -20.77564 -20.42624 -19.44433 -18.57812 -17.87129 -17.67608 -17.20894 -16.34854 -16.29588 -16.04899 -15.78909 -15.63414 -15.41484 -15.29130 -15.05941 -14.84543 -14.63274 -14.27487 -14.10725 -14.05219 -13.93232 -13.80691 -13.48523 -13.31217 -12.87035 -12.73152 -12.52402 -12.50046 -12.15592 -12.06411 -11.97439 -11.92462 -11.69768 -11.55187 -11.53054 -11.50932 -11.48517 -11.06162 -10.89307 -10.66273 -10.59249 -10.53125 -9.70005 -8.91763 -8.18365 -5.44461 0.25414 1.07468 1.25462 1.54938 1.64194 1.82154 1.89100 2.15272 2.65023 2.95593 3.25757 3.39444 3.54279 3.65307 3.70466 3.84821 3.89141 4.08643 4.15753 4.21794 4.30527 4.34435 4.38309 4.40369 4.42095 4.54348 4.58711 4.61506 4.69325 4.71351 4.76161 4.79475 4.86793 4.93814 4.97183 5.04202 5.06342 5.11005 5.18274 5.24643 5.25281 5.28047 5.33077 5.41520 5.45590 5.49460 5.62062 5.81487 5.83055 6.20547 6.41723 6.78939 7.05989 7.08534 7.78424 8.23889 9.03210 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.002252 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.737394 B =12431.259388 C =13350.801981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.210 3.790 4 N -0.498 5.498 5 C 0.124 3.876 6 C 0.600 3.400 7 O -0.572 6.572 8 N -0.585 5.585 9 C 0.076 3.924 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.080 4.080 13 H 0.053 0.947 14 C -0.060 4.060 15 C -0.113 4.113 16 C 0.141 3.859 17 N -0.621 5.621 18 C -0.349 4.349 19 H 0.050 0.950 20 C -0.084 4.084 21 N -0.953 5.953 22 Si 1.119 2.881 23 H -0.291 1.291 24 H -0.272 1.272 25 H -0.283 1.283 26 C 0.156 3.844 27 C -0.121 4.121 28 C 0.117 3.883 29 N -0.289 5.289 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.286 0.714 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.019 0.981 44 H 0.049 0.951 45 H 0.256 0.744 46 H 0.039 0.961 47 H 0.006 0.994 48 H 0.062 0.938 49 H 0.038 0.962 50 H 0.067 0.933 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.761 27.322 0.435 36.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.094 5.094 3 C -0.084 4.084 4 N -0.225 5.225 5 C -0.154 4.154 6 C 0.385 3.615 7 O -0.449 6.449 8 N -0.316 5.316 9 C -0.045 4.045 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.100 4.100 13 H 0.071 0.929 14 C -0.079 4.079 15 C -0.151 4.151 16 C 0.017 3.983 17 N -0.346 5.346 18 C -0.479 4.479 19 H 0.068 0.932 20 C -0.279 4.279 21 N -0.597 5.597 22 Si 0.943 3.057 23 H -0.217 1.217 24 H -0.198 1.198 25 H -0.209 1.209 26 C 0.030 3.970 27 C -0.160 4.160 28 C -0.006 4.006 29 N -0.131 5.131 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.165 0.835 33 H 0.301 0.699 34 H 0.159 0.841 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.081 0.919 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.495 24.595 0.571 34.717 hybrid contribution -0.160 0.980 0.099 0.998 sum -24.656 25.575 0.669 35.531 Atomic orbital electron populations 1.22783 0.69076 1.07917 1.06718 1.47792 1.10923 1.02974 1.47758 1.27726 0.84669 0.97669 0.98299 1.70948 1.21830 1.07602 1.22089 1.23284 0.91540 0.90362 1.10242 1.16847 0.82209 0.85447 0.76969 1.90801 1.85902 1.16153 1.52093 1.47924 1.03804 1.12178 1.67681 1.22903 1.05377 0.78380 0.97873 1.21902 0.95344 1.02054 0.97047 1.21658 0.97943 0.92297 1.03187 1.21390 0.94526 0.97385 0.96659 0.92856 1.20910 0.95123 0.93329 0.98522 1.21939 0.95815 1.00466 0.96905 1.21094 0.95539 0.84172 0.97544 1.44360 1.52152 1.01928 1.36189 1.20286 1.39296 0.95286 0.93028 0.93179 1.27327 0.97959 1.04690 0.97916 1.70883 1.51365 1.31480 1.05941 0.82800 0.76993 0.72431 0.73443 1.21689 1.19767 1.20890 1.20732 0.89563 0.97933 0.88783 1.21943 0.97134 0.96720 1.00239 1.21761 0.84904 0.95205 0.98687 1.74293 1.03190 1.15994 1.19597 0.87490 0.88892 0.83468 0.69899 0.84083 0.90286 0.93103 0.87763 0.90460 0.90436 0.90935 0.88898 0.93764 0.96317 0.93273 0.93279 0.94229 0.97608 0.91931 0.94355 0.91444 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.02 11.38 127.77 1.45 1.48 16 2 N -0.30 -3.57 3.72 -373.45 -1.39 -4.96 16 3 C 0.21 1.73 12.62 180.30 2.27 4.01 16 4 N -0.50 -8.89 7.86 -193.03 -1.52 -10.41 16 5 C 0.12 3.30 7.65 137.13 1.05 4.35 16 6 C 0.60 19.74 7.70 86.79 0.67 20.41 16 7 O -0.57 -23.84 16.51 -3.89 -0.06 -23.90 16 8 N -0.58 -16.04 2.97 -822.29 -2.44 -18.49 16 9 C 0.08 1.47 6.11 86.36 0.53 2.00 16 10 C -0.13 -2.16 6.08 30.67 0.19 -1.98 16 11 C -0.11 -2.29 4.86 30.62 0.15 -2.14 16 12 C -0.08 -2.21 1.92 -10.72 -0.02 -2.24 16 13 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.06 -1.97 1.74 -10.77 -0.02 -1.99 16 15 C -0.11 -3.82 5.05 30.67 0.15 -3.67 16 16 C 0.14 6.11 6.52 86.36 0.56 6.67 16 17 N -0.62 -33.26 2.87 -699.92 -2.01 -35.27 16 18 C -0.35 -20.70 9.55 84.03 0.80 -19.90 16 19 H 0.05 2.95 7.89 -2.91 -0.02 2.92 16 20 C -0.08 -5.05 4.89 84.86 0.42 -4.64 16 21 N -0.95 -61.40 12.38 21.65 0.27 -61.13 16 22 Si 1.12 53.95 29.95 68.60 2.05 56.01 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 26 C 0.16 8.00 4.52 86.22 0.39 8.39 16 27 C -0.12 -5.04 5.03 30.53 0.15 -4.88 16 28 C 0.12 3.40 5.20 86.36 0.45 3.84 16 29 N -0.29 -7.15 12.09 -52.43 -0.63 -7.78 16 30 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.15 -1.25 8.14 -2.39 -0.02 -1.27 16 33 H 0.29 -1.54 8.06 -2.91 -0.02 -1.56 16 34 H 0.14 2.64 4.11 -21.41 -0.09 2.55 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.49 6.33 -2.39 -0.02 1.47 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.09 2.46 6.33 -2.39 -0.02 2.44 16 42 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 45 H 0.26 16.71 6.07 -92.70 -0.56 16.15 16 46 H 0.04 2.33 6.19 -2.39 -0.01 2.32 16 47 H 0.01 0.31 7.73 -2.38 -0.02 0.29 16 48 H 0.06 2.44 6.49 -2.38 -0.02 2.43 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.07 2.39 5.58 -2.39 -0.01 2.38 16 51 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -90.55 389.03 4.52 -86.03 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.06 Total: 10.18 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 9.20 Total: 9.72 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -7.73 Total: -138.04 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 2.05 Total: 56.01 kcal Total: -90.55 4.52 -86.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047237059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.545 kcal (2) G-P(sol) polarization free energy of solvation -90.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds