Wall clock time and date at job start Wed Apr 1 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47042 * 2 1 4 4 N 1.28520 * 124.44247 * 269.97052 * 3 2 1 5 5 C 1.31136 * 109.05938 * 179.73217 * 4 3 2 6 6 C 1.50697 * 127.11356 * 180.29054 * 5 4 3 7 7 C 1.40920 * 105.77577 * 0.43676 * 5 4 3 8 8 C 1.47802 * 127.23964 * 179.83163 * 7 5 4 9 9 O 1.21565 * 119.99772 * 359.71733 * 8 7 5 10 10 N 1.34776 * 120.00416 * 179.70828 * 8 7 5 11 11 C 1.46493 * 120.00062 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46874 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.43723 * 300.04611 * 12 11 10 14 14 C 1.53146 * 109.43716 * 59.96093 * 12 11 10 15 15 C 1.53705 * 108.87593 * 66.17421 * 14 12 11 16 16 H 1.09005 * 112.09827 * 187.61466 * 15 14 12 17 17 C 1.54602 * 107.83242 * 312.22795 * 15 14 12 18 18 C 1.54821 * 104.65386 * 88.55207 * 17 15 14 19 19 C 1.54610 * 104.65345 * 0.02562 * 18 17 15 20 20 H 1.08997 * 112.69983 * 147.18814 * 19 18 17 21 21 C 1.53152 * 109.43478 * 180.18427 * 12 11 10 22 22 N 1.48293 * 107.27530 * 64.01093 * 15 14 12 23 23 C 1.36933 * 128.21290 * 107.39713 * 22 15 14 24 24 H 1.07995 * 120.00518 * 164.81230 * 23 22 15 25 25 C 1.38817 * 119.99939 * 344.80809 * 23 22 15 26 26 N 1.31627 * 119.99649 * 351.63272 * 25 23 22 27 27 Si 1.86797 * 120.00110 * 171.62701 * 25 23 22 28 28 H 1.48501 * 109.47419 * 270.00230 * 27 25 23 29 29 H 1.48497 * 109.46920 * 30.00705 * 27 25 23 30 30 H 1.48506 * 109.47076 * 150.00278 * 27 25 23 31 31 N 1.28586 * 124.44797 * 89.99877 * 3 2 1 32 32 H 1.08997 * 109.46728 * 60.00654 * 1 2 3 33 33 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47030 * 300.00181 * 1 2 3 35 35 H 1.09000 * 109.47419 * 239.99444 * 2 1 3 36 36 H 1.09006 * 109.46942 * 119.99398 * 2 1 3 37 37 H 1.09006 * 109.47181 * 270.17604 * 6 5 4 38 38 H 1.09003 * 109.47282 * 30.17666 * 6 5 4 39 39 H 1.08996 * 109.47183 * 150.17680 * 6 5 4 40 40 H 0.97005 * 119.99563 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.47285 * 59.99992 * 11 10 8 42 42 H 1.08995 * 109.47385 * 300.00050 * 11 10 8 43 43 H 1.09001 * 109.56536 * 306.35724 * 14 12 11 44 44 H 1.08994 * 109.66835 * 186.05089 * 14 12 11 45 45 H 1.09003 * 110.38351 * 207.48734 * 17 15 14 46 46 H 1.09001 * 110.38567 * 329.84792 * 17 15 14 47 47 H 1.08995 * 110.33754 * 241.26351 * 18 17 15 48 48 H 1.09003 * 110.52611 * 118.83168 * 18 17 15 49 49 H 1.08999 * 109.56960 * 53.63928 * 21 12 11 50 50 H 1.08992 * 109.57446 * 173.88429 * 21 12 11 51 51 H 0.96999 * 119.99411 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 -1.0599 5 6 2.6769 3.2604 -0.7120 6 6 3.0680 4.3901 -1.6295 7 6 2.6857 3.2676 0.6971 8 6 3.0801 4.3826 1.5834 9 8 3.4526 5.4365 1.1054 10 7 3.0267 4.2312 2.9216 11 6 3.4171 5.3367 3.8000 12 6 3.2657 4.9057 5.2602 13 1 2.2272 4.6364 5.4531 14 6 4.1645 3.6955 5.5302 15 6 5.6337 4.1291 5.4035 16 1 6.3172 3.2815 5.4542 17 6 5.7782 4.9343 4.0916 18 6 5.4689 6.3970 4.4938 19 6 5.1688 6.3309 6.0091 20 1 5.4833 7.2295 6.5397 21 6 3.6697 6.0634 6.1778 22 7 5.8932 5.1232 6.4728 23 6 6.6242 4.9624 7.6196 24 1 6.9357 5.8267 8.1871 25 6 6.9647 3.6882 8.0526 26 7 6.4505 2.6320 7.4588 27 14 8.1527 3.4726 9.4779 28 1 9.5416 3.3973 8.9577 29 1 8.0321 4.6287 10.4020 30 1 7.8287 2.2201 10.2072 31 7 2.2607 2.0669 1.0604 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 4.1324 4.3231 -1.8550 38 1 2.4956 4.3217 -2.5546 39 1 2.8590 5.3426 -1.1426 40 1 2.7297 3.3902 3.3030 41 1 2.7774 6.1978 3.6067 42 1 4.4557 5.6050 3.6066 43 1 3.9508 2.9125 4.8026 44 1 3.9805 3.3190 6.5364 45 1 6.7938 4.8508 3.7048 46 1 5.0590 4.5851 3.3507 47 1 4.5985 6.7635 3.9497 48 1 6.3320 7.0357 4.3057 49 1 3.1058 6.9565 5.9086 50 1 3.4605 5.7982 7.2141 51 1 6.6888 1.7417 7.7612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048594387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:27 Heat of formation + Delta-G solvation = 187.582116 kcal Electronic energy + Delta-G solvation = -32261.477552 eV Core-core repulsion = 28203.057694 eV Total energy + Delta-G solvation = -4058.419858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.75425 -41.19376 -38.78341 -35.34024 -34.71210 -33.27470 -32.65161 -31.58049 -31.33495 -30.29615 -29.91457 -28.20468 -26.81481 -25.08740 -23.54462 -23.21894 -22.65551 -21.17620 -20.66618 -20.44475 -19.39321 -18.73843 -17.83095 -17.17399 -17.00260 -16.58466 -16.01666 -15.20292 -14.88387 -14.76065 -14.31207 -14.06872 -13.98258 -13.65125 -13.35634 -12.98791 -12.96459 -12.79287 -12.76545 -12.58221 -12.50658 -11.97746 -11.85413 -11.67694 -11.57279 -11.40413 -11.37851 -11.22571 -11.07734 -10.82220 -10.69680 -10.55651 -10.37726 -10.17363 -9.98359 -9.70645 -9.52663 -9.41236 -9.33914 -9.28354 -9.18483 -8.58489 -8.09296 -6.77500 -5.74438 -3.09133 1.28476 1.84218 1.96735 3.30909 3.37864 3.39332 3.45382 3.46194 3.81060 4.40598 4.45146 4.48503 4.66047 4.69322 4.92074 5.12861 5.22271 5.26655 5.32841 5.38841 5.49281 5.51740 5.57128 5.60454 5.63309 5.67559 5.78364 5.85334 5.86480 5.96139 6.09573 6.13146 6.16360 6.21134 6.30778 6.43131 6.45741 6.51194 6.60452 6.68060 6.74402 6.82140 6.87719 6.97381 7.10410 7.15179 7.58534 7.61083 7.70172 7.79419 8.06961 8.27283 8.35545 9.16363 9.78385 10.58131 11.37554 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.002886 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.106916 B = 9698.070013 C =10668.525283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.143 5.143 4 N -0.296 5.296 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.044 4.044 8 C 0.602 3.398 9 O -0.532 6.532 10 N -0.701 5.701 11 C 0.004 3.996 12 C -0.088 4.088 13 H 0.051 0.949 14 C -0.111 4.111 15 C 0.183 3.817 16 H 0.110 0.890 17 C -0.174 4.174 18 C -0.160 4.160 19 C 0.148 3.852 20 H 0.067 0.933 21 C -0.120 4.120 22 N -0.584 5.584 23 C -0.220 4.220 24 H 0.074 0.926 25 C -0.006 4.006 26 N -0.912 5.912 27 Si 0.909 3.091 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.292 1.292 31 N -0.248 5.248 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.402 0.598 41 H 0.050 0.950 42 H 0.197 0.803 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.056 0.944 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 -2.586 -15.685 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.045 5.045 4 N -0.137 5.137 5 C -0.105 4.105 6 C -0.126 4.126 7 C -0.207 4.207 8 C 0.385 3.615 9 O -0.408 6.408 10 N -0.352 5.352 11 C -0.115 4.115 12 C -0.107 4.107 13 H 0.069 0.931 14 C -0.150 4.150 15 C 0.076 3.924 16 H 0.128 0.872 17 C -0.213 4.213 18 C -0.199 4.199 19 C 0.040 3.960 20 H 0.085 0.915 21 C -0.161 4.161 22 N -0.305 5.305 23 C -0.349 4.349 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.559 5.559 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.207 1.207 30 H -0.218 1.218 31 N -0.095 5.095 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.237 0.763 41 H 0.068 0.932 42 H 0.212 0.788 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.501 -3.292 -15.772 19.796 hybrid contribution 0.342 -0.099 1.103 1.159 sum -11.159 -3.391 -14.669 18.740 Atomic orbital electron populations 1.22188 0.92968 1.04005 1.03757 1.22085 0.96135 0.74170 1.06179 1.48085 1.43916 1.13361 0.99179 1.73911 1.19153 1.05192 1.15404 1.23269 1.00787 0.93716 0.92748 1.20222 1.01986 0.93758 0.96649 1.23077 1.09428 0.93756 0.94455 1.16592 0.78324 0.84866 0.81746 1.90762 1.47961 1.26749 1.75339 1.46195 1.65689 1.18255 1.05055 1.25289 1.09190 0.87449 0.89565 1.21277 0.98844 0.97897 0.92638 0.93106 1.22065 0.97436 0.94112 1.01435 1.21476 0.94010 0.93201 0.83744 0.87241 1.23644 1.00664 0.95829 1.01119 1.23456 1.00943 0.96838 0.98618 1.21453 0.90355 0.91985 0.92203 0.91513 1.22045 0.98560 0.96070 0.99380 1.45172 1.56573 1.08246 1.20481 1.19001 1.24574 0.92163 0.99134 0.90776 1.24826 1.00822 0.95586 0.99065 1.69860 1.45707 0.97169 1.43168 0.86166 0.80908 0.77085 0.81864 1.21708 1.20745 1.21849 1.74366 1.14863 1.04462 1.15849 0.91427 0.89433 0.91259 0.87154 0.86961 0.90060 0.90906 0.88543 0.76285 0.93205 0.78836 0.94460 0.90679 0.93073 0.89080 0.89182 0.92546 0.93553 0.91627 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.13 0.93 7.24 -4.04 -0.03 0.90 16 3 N -0.14 -1.68 3.94 -10.61 -0.04 -1.72 16 4 N -0.30 -3.79 12.01 33.92 0.41 -3.38 16 5 C 0.06 0.79 7.39 -81.88 -0.61 0.19 16 6 C -0.07 -0.73 9.99 36.00 0.36 -0.37 16 7 C -0.04 -0.65 7.21 -82.68 -0.60 -1.25 16 8 C 0.60 9.61 7.58 -12.35 -0.09 9.51 16 9 O -0.53 -9.33 15.20 5.31 0.08 -9.25 16 10 N -0.70 -10.79 4.37 -61.27 -0.27 -11.06 16 11 C 0.00 0.06 2.68 -4.04 -0.01 0.05 16 12 C -0.09 -1.52 2.76 -90.46 -0.25 -1.77 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.11 -2.26 5.20 -26.29 -0.14 -2.39 16 15 C 0.18 4.12 3.16 -65.73 -0.21 3.91 16 16 H 0.11 2.88 6.28 -51.93 -0.33 2.55 16 17 C -0.17 -3.37 5.74 -24.93 -0.14 -3.51 16 18 C -0.16 -2.86 5.74 -24.93 -0.14 -3.00 16 19 C 0.15 2.95 4.29 -66.00 -0.28 2.66 16 20 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 21 C -0.12 -2.17 5.35 -26.54 -0.14 -2.31 16 22 N -0.58 -14.07 2.82 -153.06 -0.43 -14.50 16 23 C -0.22 -5.90 10.38 -15.06 -0.16 -6.06 16 24 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 25 C -0.01 -0.17 5.43 -17.43 -0.09 -0.26 16 26 N -0.91 -25.43 10.59 55.49 0.59 -24.85 16 27 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 N -0.25 -3.40 11.84 33.42 0.40 -3.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.12 6.77 -51.93 -0.35 0.77 16 40 H 0.40 5.93 7.08 -40.82 -0.29 5.65 16 41 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 42 H 0.20 3.33 1.12 -165.81 -0.19 3.15 16 43 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 44 H 0.07 1.78 8.03 -51.93 -0.42 1.37 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.66 3.94 -51.93 -0.20 1.46 16 47 H 0.09 1.46 4.83 -51.93 -0.25 1.21 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 51 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -31.10 386.83 -8.45 -39.55 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.83 Total: 10.08 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.15 Total: -4.30 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.65 Total: -58.51 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.10 -8.45 -39.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048594387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.129 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds