Wall clock time and date at job start Wed Apr 1 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47042 * 2 1 4 4 N 1.28520 * 124.44247 * 269.97052 * 3 2 1 5 5 C 1.31136 * 109.05938 * 179.73217 * 4 3 2 6 6 C 1.50697 * 127.11356 * 180.29054 * 5 4 3 7 7 C 1.40920 * 105.77577 * 0.43676 * 5 4 3 8 8 C 1.47802 * 127.23964 * 179.83163 * 7 5 4 9 9 O 1.21565 * 119.99772 * 359.71733 * 8 7 5 10 10 N 1.34776 * 120.00416 * 179.70828 * 8 7 5 11 11 C 1.46493 * 120.00062 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46874 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.43723 * 300.04611 * 12 11 10 14 14 C 1.53146 * 109.43716 * 59.96093 * 12 11 10 15 15 C 1.53705 * 108.87593 * 66.17421 * 14 12 11 16 16 H 1.09005 * 112.09827 * 187.61466 * 15 14 12 17 17 C 1.54602 * 107.83242 * 312.22795 * 15 14 12 18 18 C 1.54821 * 104.65386 * 88.55207 * 17 15 14 19 19 C 1.54610 * 104.65345 * 0.02562 * 18 17 15 20 20 H 1.08997 * 112.69983 * 147.18814 * 19 18 17 21 21 C 1.53152 * 109.43478 * 180.18427 * 12 11 10 22 22 N 1.48293 * 107.27530 * 64.01093 * 15 14 12 23 23 C 1.36933 * 128.21290 * 107.39713 * 22 15 14 24 24 H 1.07995 * 120.00518 * 164.81230 * 23 22 15 25 25 C 1.38817 * 119.99939 * 344.80809 * 23 22 15 26 26 N 1.31627 * 119.99649 * 351.63272 * 25 23 22 27 27 Si 1.86797 * 120.00110 * 171.62701 * 25 23 22 28 28 H 1.48501 * 109.47419 * 270.00230 * 27 25 23 29 29 H 1.48497 * 109.46920 * 30.00705 * 27 25 23 30 30 H 1.48506 * 109.47076 * 150.00278 * 27 25 23 31 31 N 1.28586 * 124.44797 * 89.99877 * 3 2 1 32 32 H 1.08997 * 109.46728 * 60.00654 * 1 2 3 33 33 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47030 * 300.00181 * 1 2 3 35 35 H 1.09000 * 109.47419 * 239.99444 * 2 1 3 36 36 H 1.09006 * 109.46942 * 119.99398 * 2 1 3 37 37 H 1.09006 * 109.47181 * 270.17604 * 6 5 4 38 38 H 1.09003 * 109.47282 * 30.17666 * 6 5 4 39 39 H 1.08996 * 109.47183 * 150.17680 * 6 5 4 40 40 H 0.97005 * 119.99563 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.47285 * 59.99992 * 11 10 8 42 42 H 1.08995 * 109.47385 * 300.00050 * 11 10 8 43 43 H 1.09001 * 109.56536 * 306.35724 * 14 12 11 44 44 H 1.08994 * 109.66835 * 186.05089 * 14 12 11 45 45 H 1.09003 * 110.38351 * 207.48734 * 17 15 14 46 46 H 1.09001 * 110.38567 * 329.84792 * 17 15 14 47 47 H 1.08995 * 110.33754 * 241.26351 * 18 17 15 48 48 H 1.09003 * 110.52611 * 118.83168 * 18 17 15 49 49 H 1.08999 * 109.56960 * 53.63928 * 21 12 11 50 50 H 1.08992 * 109.57446 * 173.88429 * 21 12 11 51 51 H 0.96999 * 119.99411 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 -1.0599 5 6 2.6769 3.2604 -0.7120 6 6 3.0680 4.3901 -1.6295 7 6 2.6857 3.2676 0.6971 8 6 3.0801 4.3826 1.5834 9 8 3.4526 5.4365 1.1054 10 7 3.0267 4.2312 2.9216 11 6 3.4171 5.3367 3.8000 12 6 3.2657 4.9057 5.2602 13 1 2.2272 4.6364 5.4531 14 6 4.1645 3.6955 5.5302 15 6 5.6337 4.1291 5.4035 16 1 6.3172 3.2815 5.4542 17 6 5.7782 4.9343 4.0916 18 6 5.4689 6.3970 4.4938 19 6 5.1688 6.3309 6.0091 20 1 5.4833 7.2295 6.5397 21 6 3.6697 6.0634 6.1778 22 7 5.8932 5.1232 6.4728 23 6 6.6242 4.9624 7.6196 24 1 6.9357 5.8267 8.1871 25 6 6.9647 3.6882 8.0526 26 7 6.4505 2.6320 7.4588 27 14 8.1527 3.4726 9.4779 28 1 9.5416 3.3973 8.9577 29 1 8.0321 4.6287 10.4020 30 1 7.8287 2.2201 10.2072 31 7 2.2607 2.0669 1.0604 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 4.1324 4.3231 -1.8550 38 1 2.4956 4.3217 -2.5546 39 1 2.8590 5.3426 -1.1426 40 1 2.7297 3.3902 3.3030 41 1 2.7774 6.1978 3.6067 42 1 4.4557 5.6050 3.6066 43 1 3.9508 2.9125 4.8026 44 1 3.9805 3.3190 6.5364 45 1 6.7938 4.8508 3.7048 46 1 5.0590 4.5851 3.3507 47 1 4.5985 6.7635 3.9497 48 1 6.3320 7.0357 4.3057 49 1 3.1058 6.9565 5.9086 50 1 3.4605 5.7982 7.2141 51 1 6.6888 1.7417 7.7612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048594387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:26 Heat of formation + Delta-G solvation = 168.054168 kcal Electronic energy + Delta-G solvation = -32262.324348 eV Core-core repulsion = 28203.057694 eV Total energy + Delta-G solvation = -4059.266653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.71905 -42.69667 -40.07879 -36.30024 -35.98413 -34.73562 -33.94790 -32.87483 -32.39516 -31.89420 -31.64942 -29.15132 -28.26645 -26.28336 -25.05816 -24.79006 -23.56172 -22.19863 -22.07133 -21.71027 -21.00028 -20.33543 -19.00858 -18.63037 -18.13040 -17.53874 -17.50307 -16.65125 -16.49635 -15.92606 -15.60214 -15.26558 -14.99613 -14.80603 -14.52289 -14.47270 -14.25922 -14.13083 -13.85226 -13.65548 -13.42978 -13.25799 -13.10954 -13.04646 -12.98985 -12.92268 -12.63410 -12.54875 -12.40466 -12.35530 -12.32413 -12.04783 -11.96276 -11.47134 -11.37735 -11.19357 -11.09785 -10.99927 -10.96211 -10.77082 -10.45661 -10.24446 -9.45341 -8.69451 -7.79260 -5.13731 0.22888 0.84714 1.19799 1.47523 1.48721 1.56304 2.14388 2.20378 2.52930 2.86033 3.36922 3.63634 3.65541 3.85067 3.90513 3.94705 3.98546 4.01867 4.05383 4.23174 4.28771 4.31899 4.43863 4.46266 4.57895 4.61848 4.64248 4.69590 4.76101 4.79266 4.80642 4.81943 4.94297 4.99265 5.00557 5.08169 5.13429 5.18254 5.20024 5.30464 5.33415 5.41062 5.49062 5.54774 5.57534 5.58856 5.63522 5.83935 5.93323 6.32901 6.47225 7.04599 7.14365 7.16080 7.81226 8.62348 9.31031 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.002886 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.106916 B = 9698.070013 C =10668.525283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 N -0.133 5.133 4 N -0.299 5.299 5 C 0.049 3.951 6 C -0.065 4.065 7 C -0.071 4.071 8 C 0.604 3.396 9 O -0.550 6.550 10 N -0.700 5.700 11 C 0.013 3.987 12 C -0.078 4.078 13 H 0.067 0.933 14 C -0.099 4.099 15 C 0.177 3.823 16 H 0.065 0.935 17 C -0.165 4.165 18 C -0.149 4.149 19 C 0.139 3.861 20 H 0.070 0.930 21 C -0.115 4.115 22 N -0.606 5.606 23 C -0.229 4.229 24 H 0.074 0.926 25 C -0.060 4.060 26 N -0.934 5.934 27 Si 0.968 3.032 28 H -0.292 1.292 29 H -0.272 1.272 30 H -0.298 1.298 31 N -0.255 5.255 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.405 0.595 41 H 0.066 0.934 42 H 0.187 0.813 43 H 0.047 0.953 44 H 0.033 0.967 45 H 0.041 0.959 46 H 0.106 0.894 47 H 0.118 0.882 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.042 0.958 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 -2.059 -17.176 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.001 3.999 3 N -0.037 5.037 4 N -0.141 5.141 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.232 4.232 8 C 0.387 3.613 9 O -0.427 6.427 10 N -0.350 5.350 11 C -0.106 4.106 12 C -0.097 4.097 13 H 0.085 0.915 14 C -0.138 4.138 15 C 0.070 3.930 16 H 0.083 0.917 17 C -0.203 4.203 18 C -0.186 4.186 19 C 0.033 3.967 20 H 0.089 0.911 21 C -0.155 4.155 22 N -0.328 5.328 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.254 4.254 26 N -0.583 5.583 27 Si 0.798 3.202 28 H -0.219 1.219 29 H -0.197 1.197 30 H -0.224 1.224 31 N -0.104 5.104 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.241 0.759 41 H 0.084 0.916 42 H 0.202 0.798 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.135 0.865 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.061 0.939 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.819 -2.737 -17.274 21.685 hybrid contribution 0.712 -0.349 1.526 1.719 sum -12.108 -3.086 -15.748 20.103 Atomic orbital electron populations 1.22160 0.91823 1.05583 1.02588 1.22634 0.97072 0.72220 1.07995 1.48673 1.42277 1.14283 0.98496 1.73914 1.19339 1.05133 1.15715 1.23666 1.00590 0.94484 0.92659 1.20273 1.02705 0.92449 0.96918 1.22963 1.11276 0.94029 0.94926 1.16704 0.77807 0.84973 0.81766 1.90744 1.48807 1.27514 1.75636 1.46116 1.65722 1.18201 1.04990 1.25022 1.08935 0.88156 0.88470 1.21165 0.98765 0.96196 0.93544 0.91478 1.21830 0.96889 0.95826 0.99272 1.21359 0.94250 0.92224 0.85152 0.91715 1.23583 1.00654 0.96568 0.99497 1.23406 1.02450 0.95688 0.97093 1.21713 0.91158 0.90500 0.93368 0.91148 1.21959 0.97520 0.97689 0.98296 1.45375 1.57229 1.10051 1.20152 1.19297 1.24528 0.92183 0.99862 0.90806 1.25516 1.02706 0.95570 1.01564 1.70058 1.46886 0.96982 1.44332 0.85234 0.78771 0.76789 0.79443 1.21924 1.19732 1.22447 1.74322 1.14989 1.04425 1.16704 0.92193 0.86478 0.92709 0.84926 0.85643 0.89381 0.88920 0.89399 0.75936 0.91620 0.79787 0.93487 0.94781 0.94033 0.87669 0.86499 0.91837 0.89866 0.93905 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.12 1.38 7.24 86.38 0.63 2.01 16 3 N -0.13 -2.92 3.94 -187.50 -0.74 -3.66 16 4 N -0.30 -7.21 12.01 -46.59 -0.56 -7.77 16 5 C 0.05 1.26 7.39 43.32 0.32 1.58 16 6 C -0.06 -1.31 9.99 71.23 0.71 -0.60 16 7 C -0.07 -2.01 7.21 42.24 0.30 -1.71 16 8 C 0.60 18.43 7.58 86.77 0.66 19.09 16 9 O -0.55 -18.38 15.20 -3.92 -0.06 -18.44 16 10 N -0.70 -20.36 4.37 -466.02 -2.04 -22.40 16 11 C 0.01 0.39 2.68 86.38 0.23 0.62 16 12 C -0.08 -2.57 2.76 -10.69 -0.03 -2.60 16 13 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.10 -4.06 5.20 30.88 0.16 -3.90 16 15 C 0.18 8.17 3.16 45.43 0.14 8.31 16 16 H 0.06 3.58 6.28 -2.38 -0.01 3.56 16 17 C -0.16 -6.28 5.74 31.76 0.18 -6.10 16 18 C -0.15 -4.99 5.74 31.76 0.18 -4.81 16 19 C 0.14 5.38 4.29 45.27 0.19 5.57 16 20 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 21 C -0.11 -3.92 5.35 30.72 0.16 -3.76 16 22 N -0.61 -29.64 2.82 -638.15 -1.80 -31.45 16 23 C -0.23 -12.55 10.38 84.04 0.87 -11.67 16 24 H 0.07 3.93 7.84 -2.91 -0.02 3.90 16 25 C -0.06 -3.32 5.43 84.86 0.46 -2.86 16 26 N -0.93 -54.27 10.59 21.65 0.23 -54.04 16 27 Si 0.97 45.56 29.56 68.60 2.03 47.59 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 30 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 31 N -0.26 -6.72 11.84 -48.17 -0.57 -7.29 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.94 6.77 -2.39 -0.02 1.92 16 40 H 0.40 11.42 7.08 -92.70 -0.66 10.77 16 41 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 42 H 0.19 5.89 1.12 -109.36 -0.12 5.77 16 43 H 0.05 1.79 6.71 -2.39 -0.02 1.77 16 44 H 0.03 1.66 8.03 -2.39 -0.02 1.65 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.11 3.72 3.94 -2.39 -0.01 3.71 16 47 H 0.12 3.38 4.83 -2.39 -0.01 3.37 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.18 386.83 2.60 -66.59 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.19 Total: 32.47 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.92 Total: -1.61 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.48 Total: -126.60 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.44 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.18 2.60 -66.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048594387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.642 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds