Wall clock time and date at job start Wed Apr 1 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40091 * 126.04136 * 2 1 4 4 C 1.30829 * 108.20493 * 180.02562 * 3 2 1 5 5 C 1.39869 * 108.20553 * 359.77562 * 4 3 2 6 6 C 1.34949 * 126.03664 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.12806 * 359.94859 * 6 2 1 8 8 C 1.50699 * 109.46880 * 264.99905 * 7 6 2 9 9 O 1.21277 * 120.00218 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64567 * 359.95438 * 10 8 7 12 12 C 1.54333 * 107.26835 * 181.09729 * 11 10 8 13 13 C 1.55161 * 102.94162 * 22.19228 * 12 11 10 14 14 H 1.08998 * 111.00469 * 82.57199 * 13 12 11 15 15 N 1.46899 * 111.03740 * 206.41127 * 13 12 11 16 16 C 1.46906 * 110.99732 * 299.64144 * 15 13 12 17 17 C 1.53237 * 109.33777 * 172.74603 * 16 15 13 18 18 N 1.47078 * 108.52026 * 53.82992 * 17 16 15 19 19 C 1.36942 * 120.88028 * 128.79477 * 18 17 16 20 20 H 1.07993 * 120.00087 * 208.19598 * 19 18 17 21 21 C 1.38816 * 120.00018 * 28.18437 * 19 18 17 22 22 N 1.31618 * 119.99934 * 18.12850 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 198.12351 * 21 19 18 24 24 H 1.48496 * 109.47272 * 84.98294 * 23 21 19 25 25 H 1.48496 * 109.46933 * 204.98267 * 23 21 19 26 26 H 1.48501 * 109.46947 * 324.98244 * 23 21 19 27 27 C 1.47078 * 118.24202 * 308.81518 * 18 17 16 28 28 C 1.46897 * 111.00078 * 175.34562 * 15 13 12 29 29 C 1.47421 * 125.64961 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47460 * 269.97841 * 1 2 3 31 31 H 1.09003 * 109.47055 * 29.97725 * 1 2 3 32 32 H 1.08994 * 109.47030 * 149.97547 * 1 2 3 33 33 H 1.08001 * 125.89473 * 180.02562 * 4 3 2 34 34 H 1.08001 * 126.04245 * 180.23203 * 5 4 3 35 35 H 1.08995 * 109.47631 * 144.99261 * 7 6 2 36 36 H 1.09000 * 109.46709 * 24.99568 * 7 6 2 37 37 H 1.08996 * 109.88867 * 61.68261 * 11 10 8 38 38 H 1.09001 * 110.01231 * 300.58085 * 11 10 8 39 39 H 1.08996 * 110.72165 * 263.82990 * 12 11 10 40 40 H 1.08998 * 110.87107 * 140.62862 * 12 11 10 41 41 H 1.08996 * 109.49486 * 292.70728 * 16 15 13 42 42 H 1.09008 * 109.49076 * 52.79093 * 16 15 13 43 43 H 1.09006 * 109.62670 * 294.12312 * 17 16 15 44 44 H 1.09002 * 109.63035 * 173.54097 * 17 16 15 45 45 H 0.96998 * 120.00461 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.62853 * 291.47975 * 27 18 17 47 47 H 1.08999 * 109.63016 * 170.89208 * 27 18 17 48 48 H 1.09006 * 109.49065 * 307.21132 * 28 15 13 49 49 H 1.09002 * 109.49583 * 67.25964 * 28 15 13 50 50 H 1.09001 * 110.36503 * 36.99313 * 29 10 8 51 51 H 1.08999 * 110.37062 * 274.67436 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5436 -0.6666 0.0043 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5259 0.0000 8 6 1.7624 -3.0418 1.4154 9 8 2.0814 -2.3163 2.3334 10 7 1.3767 -4.3096 1.6612 11 6 0.9651 -5.2918 0.6475 12 6 0.5870 -6.5889 1.3934 13 6 0.2659 -6.0853 2.8255 14 1 -0.7536 -5.7047 2.8863 15 7 0.4900 -7.1437 3.8192 16 6 -0.3691 -8.3054 3.5539 17 6 0.0206 -9.4502 4.4950 18 7 -0.0175 -8.9515 5.8782 19 6 -0.7117 -9.6233 6.8487 20 1 -1.1217 -9.0847 7.6902 21 6 -0.8886 -10.9967 6.7508 22 7 -0.1168 -11.7044 5.9536 23 14 -2.2220 -11.8403 7.7507 24 1 -3.5119 -11.7649 7.0189 25 1 -1.8557 -13.2636 7.9630 26 1 -2.3584 -11.1628 9.0651 27 6 0.7094 -7.7118 6.1912 28 6 0.2926 -6.6355 5.1833 29 6 1.2972 -4.9411 2.9910 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.4054 1.3709 -0.0003 34 1 4.4210 -1.2964 0.0086 35 1 2.4868 -3.1296 -0.5900 36 1 0.7991 -2.5864 -0.4336 37 1 1.7903 -5.4854 -0.0377 38 1 0.1037 -4.9179 0.0941 39 1 1.4264 -7.2840 1.4082 40 1 -0.2895 -7.0546 0.9428 41 1 -1.4109 -8.0337 3.7236 42 1 -0.2399 -8.6248 2.5197 43 1 1.0275 -9.7932 4.2571 44 1 -0.6856 -10.2729 4.3829 45 1 -0.2401 -12.6641 5.8854 46 1 1.7825 -7.8877 6.1162 47 1 0.4586 -7.3851 7.2004 48 1 0.9017 -5.7436 5.3308 49 1 -0.7584 -6.3864 5.3301 50 1 0.9496 -4.2216 3.7324 51 1 2.2683 -5.3440 3.2784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052019465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:00 Heat of formation + Delta-G solvation = 65.645402 kcal Electronic energy + Delta-G solvation = -30713.898279 eV Core-core repulsion = 26650.190849 eV Total energy + Delta-G solvation = -4063.707431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.28108 -41.11997 -39.78105 -38.09216 -35.81593 -34.41454 -33.54887 -33.09016 -31.83510 -31.51266 -29.87396 -28.65834 -27.61949 -27.34174 -25.09798 -24.47485 -23.56784 -22.12349 -21.66727 -21.18149 -20.80870 -19.96613 -18.81983 -18.31708 -17.74338 -17.56268 -16.84161 -16.54391 -16.23402 -15.99451 -15.60463 -15.48973 -15.31126 -15.27119 -15.14695 -14.94124 -14.68021 -14.52820 -14.03375 -13.85751 -13.74054 -13.56969 -13.46706 -13.29052 -13.23893 -13.00608 -12.85456 -12.67130 -12.54124 -12.51744 -12.16958 -12.02114 -11.87155 -11.79158 -11.62275 -11.43773 -11.37031 -11.09820 -10.58597 -10.24790 -9.69920 -9.46382 -9.31790 -8.67191 -7.88765 -5.33797 0.80973 1.46747 1.47501 1.54151 1.56305 1.62202 1.79580 2.05600 2.50280 2.96954 3.26156 3.34262 3.45223 3.67181 3.71061 3.72074 3.85537 4.00185 4.11216 4.22017 4.28407 4.32464 4.35335 4.37717 4.40334 4.47737 4.56187 4.59443 4.63425 4.67973 4.68774 4.78199 4.79680 4.84221 4.88221 4.93835 5.02136 5.04907 5.18126 5.19596 5.20858 5.29536 5.35400 5.61946 5.68635 5.73301 6.08257 6.13226 6.25415 6.37404 6.48299 6.73418 7.07761 7.13525 7.83267 8.38167 9.17893 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030980 B = 0.001860 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.594865 B =15054.095926 C =15229.982164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.376 5.376 3 N -0.336 5.336 4 C 0.038 3.962 5 C -0.276 4.276 6 C 0.094 3.906 7 C -0.064 4.064 8 C 0.528 3.472 9 O -0.583 6.583 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.120 4.120 13 C 0.070 3.930 14 H 0.053 0.947 15 N -0.528 5.528 16 C 0.056 3.944 17 C 0.185 3.815 18 N -0.614 5.614 19 C -0.267 4.267 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.145 3.855 28 C 0.055 3.945 29 C 0.122 3.878 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.205 0.795 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.019 0.981 42 H 0.094 0.906 43 H 0.001 0.999 44 H 0.053 0.947 45 H 0.251 0.749 46 H 0.015 0.985 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.023 0.977 50 H 0.057 0.943 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 18.167 -20.393 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.159 5.159 3 N -0.158 5.158 4 C -0.147 4.147 5 C -0.306 4.306 6 C -0.034 4.034 7 C -0.105 4.105 8 C 0.317 3.683 9 O -0.463 6.463 10 N -0.348 5.348 11 C -0.021 4.021 12 C -0.158 4.158 13 C -0.039 4.039 14 H 0.070 0.930 15 N -0.253 5.253 16 C -0.073 4.073 17 C 0.060 3.940 18 N -0.338 5.338 19 C -0.397 4.397 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.019 3.981 28 C -0.074 4.074 29 C -0.002 4.002 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.222 0.778 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.038 0.962 42 H 0.112 0.888 43 H 0.019 0.981 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.042 0.958 50 H 0.075 0.925 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.906 19.329 -19.980 27.815 hybrid contribution -0.671 -1.177 1.342 1.907 sum 0.235 18.152 -18.639 26.018 Atomic orbital electron populations 1.22138 0.72966 1.06319 1.03733 1.48712 1.07536 1.03094 1.56517 1.77270 1.02888 1.09248 1.26435 1.24273 0.95535 0.95768 0.99093 1.21526 0.97016 0.95365 1.16665 1.20714 0.91535 0.90068 1.01125 1.20337 1.07337 0.89294 0.93504 1.20573 0.76177 0.79799 0.91707 1.90762 1.50172 1.57157 1.48209 1.48481 1.65899 1.11384 1.09026 1.22367 1.02126 0.86960 0.90631 1.22735 1.03594 0.97272 0.92240 1.22757 0.96572 0.91027 0.93521 0.92960 1.61910 1.54872 1.06542 1.01975 1.22567 0.93242 0.91352 1.00164 1.20620 0.97468 0.93480 0.82468 1.44396 1.57860 1.25888 1.05643 1.19462 1.26407 0.89713 1.04111 0.91932 1.25792 1.00883 0.96848 1.00801 1.70186 1.38733 1.05758 1.43028 0.85300 0.79295 0.77176 0.78749 1.20909 1.22043 1.19735 1.21090 0.94101 0.86549 0.96351 1.22436 0.98587 0.97428 0.88947 1.22001 0.99398 0.93573 0.85212 0.91442 0.88322 0.86460 0.77793 0.82448 0.82953 0.84372 0.88163 0.88073 0.89870 0.88183 0.96241 0.88805 0.98083 0.92850 0.93973 0.96669 0.92580 0.89823 0.95846 0.92465 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.27 127.77 1.44 2.49 16 2 N -0.38 -7.55 4.01 -356.04 -1.43 -8.98 16 3 N -0.34 -8.16 12.58 -57.03 -0.72 -8.87 16 4 C 0.04 0.77 12.02 85.24 1.02 1.80 16 5 C -0.28 -5.43 10.72 21.99 0.24 -5.19 16 6 C 0.09 1.73 5.42 41.41 0.22 1.96 16 7 C -0.06 -0.70 5.18 29.10 0.15 -0.55 16 8 C 0.53 10.56 7.84 87.66 0.69 11.25 16 9 O -0.58 -18.21 16.29 -3.02 -0.05 -18.26 16 10 N -0.61 -10.79 3.33 -811.75 -2.70 -13.49 16 11 C 0.10 0.96 6.49 86.73 0.56 1.52 16 12 C -0.12 -1.80 5.26 31.79 0.17 -1.64 16 13 C 0.07 1.59 2.71 46.31 0.13 1.71 16 14 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 15 N -0.53 -16.38 4.53 -861.84 -3.90 -20.29 16 16 C 0.06 1.93 5.47 86.38 0.47 2.40 16 17 C 0.19 8.73 5.41 86.35 0.47 9.19 16 18 N -0.61 -31.00 3.03 -698.13 -2.11 -33.12 16 19 C -0.27 -14.74 9.60 84.03 0.81 -13.93 16 20 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 21 C -0.05 -2.63 4.89 84.86 0.41 -2.22 16 22 N -0.93 -54.58 11.35 21.65 0.25 -54.33 16 23 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.14 6.14 6.69 86.35 0.58 6.72 16 28 C 0.06 1.88 5.49 86.38 0.47 2.35 16 29 C 0.12 2.84 5.40 86.86 0.47 3.31 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.12 0.54 6.97 -2.39 -0.02 0.52 16 33 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.14 0.54 6.95 -2.39 -0.02 0.52 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.19 7.93 -2.39 -0.02 1.17 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 2.67 6.81 -2.38 -0.02 2.66 16 43 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.05 2.81 6.28 -2.39 -0.01 2.80 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 48 H 0.08 2.49 6.85 -2.38 -0.02 2.48 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 1.53 7.74 -2.39 -0.02 1.51 16 51 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.45 403.41 0.58 -79.87 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.91 Total: 9.74 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 8.30 Total: 21.18 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -10.62 Total: -139.08 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -80.45 0.58 -79.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052019465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.517 kcal (2) G-P(sol) polarization free energy of solvation -80.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds