Wall clock time and date at job start Wed Apr 1 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34950 * 126.03800 * 2 1 4 4 C 1.35325 * 107.74360 * 179.75260 * 3 2 1 5 5 C 1.39868 * 107.91940 * 0.38867 * 4 3 2 6 6 C 1.50697 * 125.89600 * 179.86379 * 5 4 3 7 7 C 1.50707 * 109.46921 * 124.71892 * 6 5 4 8 8 O 1.21277 * 119.99856 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99706 * 180.02562 * 7 6 5 10 10 C 1.47020 * 125.65490 * 359.95151 * 9 7 6 11 11 C 1.54319 * 107.27520 * 178.98133 * 10 9 7 12 12 C 1.55164 * 102.94113 * 337.80677 * 11 10 9 13 13 H 1.08999 * 111.00302 * 277.43111 * 12 11 10 14 14 N 1.46895 * 111.03463 * 153.58981 * 12 11 10 15 15 C 1.46899 * 111.00035 * 192.08848 * 14 12 11 16 16 C 1.53238 * 109.34451 * 172.74715 * 15 14 12 17 17 N 1.47081 * 108.51977 * 53.82702 * 16 15 14 18 18 C 1.36936 * 120.87850 * 128.83417 * 17 16 15 19 19 H 1.07997 * 120.00604 * 333.49150 * 18 17 16 20 20 C 1.38818 * 119.99822 * 153.48994 * 18 17 16 21 21 N 1.31622 * 120.00258 * 159.44634 * 20 18 17 22 22 Si 1.86802 * 120.00016 * 339.44615 * 20 18 17 23 23 H 1.48493 * 109.47334 * 91.97345 * 22 20 18 24 24 H 1.48494 * 109.47065 * 211.97839 * 22 20 18 25 25 H 1.48506 * 109.47005 * 331.97321 * 22 20 18 26 26 C 1.47076 * 118.23838 * 308.82140 * 17 16 15 27 27 C 1.46897 * 111.00227 * 67.79052 * 14 12 11 28 28 C 1.47430 * 125.64458 * 179.97438 * 9 7 6 29 29 N 1.30830 * 108.20131 * 359.60597 * 5 4 3 30 30 H 1.09001 * 109.47069 * 269.98212 * 1 2 3 31 31 H 1.09003 * 109.47386 * 29.97412 * 1 2 3 32 32 H 1.08994 * 109.47316 * 149.97844 * 1 2 3 33 33 H 1.07997 * 126.13188 * 359.97438 * 3 2 1 34 34 H 1.07998 * 126.03531 * 180.27282 * 4 3 2 35 35 H 1.09001 * 109.47521 * 4.71999 * 6 5 4 36 36 H 1.09000 * 109.47558 * 244.71544 * 6 5 4 37 37 H 1.09004 * 109.87775 * 59.56391 * 10 9 7 38 38 H 1.08999 * 109.88282 * 298.40416 * 10 9 7 39 39 H 1.09002 * 110.72349 * 219.44774 * 11 10 9 40 40 H 1.08993 * 110.87315 * 96.23930 * 11 10 9 41 41 H 1.08997 * 109.49345 * 292.70980 * 15 14 12 42 42 H 1.09003 * 109.49166 * 52.78673 * 15 14 12 43 43 H 1.08998 * 109.62958 * 294.12099 * 16 15 14 44 44 H 1.08997 * 109.63382 * 173.53574 * 16 15 14 45 45 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.62602 * 291.47090 * 26 17 16 47 47 H 1.09008 * 109.79133 * 170.98881 * 26 17 16 48 48 H 1.09006 * 109.49123 * 307.21056 * 27 14 12 49 49 H 1.08992 * 109.49674 * 67.28777 * 27 14 12 50 50 H 1.09002 * 110.36540 * 85.24842 * 28 9 7 51 51 H 1.08997 * 110.36786 * 322.93417 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0056 5 6 3.5346 -0.7322 0.0001 6 6 4.7496 -1.6237 0.0005 7 6 4.6720 -2.5779 1.1644 8 8 3.7238 -2.5375 1.9194 9 7 5.6569 -3.4753 1.3668 10 6 6.8577 -3.6325 0.5332 11 6 7.7066 -4.7585 1.1600 12 6 7.2131 -4.7881 2.6308 13 1 7.7131 -4.0240 3.2260 14 7 7.4003 -6.1192 3.2230 15 6 6.6828 -6.2330 4.4998 16 6 6.7516 -7.6820 4.9935 17 7 8.1626 -8.0952 5.0340 18 6 8.6971 -8.6611 6.1607 19 1 8.2746 -8.4385 7.1293 20 6 9.7820 -9.5209 6.0577 21 7 10.5455 -9.7457 7.1060 22 14 10.1585 -10.3590 4.4312 23 1 11.1137 -9.5279 3.6554 24 1 10.7585 -11.6927 4.6889 25 1 8.9022 -10.5229 3.6564 26 6 8.9842 -7.8847 3.8324 27 6 8.8274 -6.4277 3.3846 28 6 5.7084 -4.4624 2.4607 29 7 2.2891 -1.1327 0.0000 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 1.9282 2.1193 -0.0004 34 1 4.4210 1.2962 0.0112 35 1 5.6482 -1.0133 0.0904 36 1 4.7859 -2.1889 -0.9308 37 1 7.4258 -2.7022 0.5224 38 1 6.5709 -3.9058 -0.4822 39 1 8.7676 -4.5128 1.1141 40 1 7.5112 -5.7115 0.6685 41 1 7.1446 -5.5755 5.2364 42 1 5.6407 -5.9461 4.3583 43 1 6.2004 -8.3282 4.3103 44 1 6.3215 -7.7493 5.9927 45 1 11.3038 -10.3462 7.0339 46 1 8.6476 -8.5504 3.0376 47 1 10.0307 -8.0871 4.0607 48 1 9.3408 -6.2820 2.4341 49 1 9.2594 -5.7675 4.1366 50 1 5.1546 -5.3606 2.1876 51 1 5.3071 -4.0328 3.3785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052027485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:05 Heat of formation + Delta-G solvation = 69.284693 kcal Electronic energy + Delta-G solvation = -30506.953728 eV Core-core repulsion = 26443.404109 eV Total energy + Delta-G solvation = -4063.549619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.13020 -41.14021 -39.88796 -38.19012 -35.87443 -34.78494 -33.69659 -32.21084 -32.07126 -31.19387 -30.61340 -29.66133 -27.79865 -26.50899 -25.30568 -24.28621 -23.78986 -22.04273 -21.76052 -21.30363 -20.89091 -19.82927 -18.89969 -18.19830 -17.80597 -17.65006 -17.12312 -16.62965 -16.14771 -16.01479 -15.89315 -15.79612 -15.45745 -15.29417 -14.97004 -14.79800 -14.52000 -14.41710 -14.19408 -14.00098 -13.82956 -13.65800 -13.56958 -13.46633 -13.35708 -13.12691 -12.86415 -12.81710 -12.53709 -12.44489 -12.15693 -12.08878 -11.82473 -11.67680 -11.52265 -11.49982 -11.40336 -10.94912 -10.71988 -10.19215 -9.66141 -9.44565 -9.42582 -8.91155 -8.16578 -5.48671 1.00839 1.30344 1.43704 1.53538 1.63204 1.66462 1.75013 2.10482 2.42115 2.86958 3.07773 3.34233 3.35490 3.55278 3.71083 3.87921 3.93218 4.06219 4.12662 4.18282 4.21437 4.32798 4.36652 4.40263 4.41990 4.45167 4.48097 4.51129 4.52039 4.66188 4.67183 4.68427 4.81687 4.83402 4.85659 4.90459 4.92309 4.95598 5.00895 5.08597 5.14436 5.23826 5.27204 5.31451 5.71267 5.81724 6.03624 6.07818 6.19013 6.22640 6.52219 6.82959 6.89235 7.16467 7.60421 8.02623 9.03310 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030127 B = 0.001887 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.162010 B =14835.480939 C =15307.142623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 C 0.053 3.947 4 C -0.283 4.283 5 C 0.061 3.939 6 C -0.045 4.045 7 C 0.525 3.475 8 O -0.581 6.581 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.117 4.117 12 C 0.071 3.929 13 H 0.053 0.947 14 N -0.524 5.524 15 C 0.051 3.949 16 C 0.148 3.852 17 N -0.623 5.623 18 C -0.251 4.251 19 H 0.049 0.951 20 C -0.037 4.037 21 N -0.958 5.958 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.312 1.312 25 H -0.265 1.265 26 C 0.124 3.876 27 C 0.057 3.943 28 C 0.120 3.880 29 N -0.324 5.324 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.214 0.786 34 H 0.171 0.829 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.104 0.896 49 H 0.023 0.977 50 H 0.067 0.933 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 25.308 -23.493 36.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.092 4.092 4 C -0.312 4.312 5 C -0.105 4.105 6 C -0.086 4.086 7 C 0.315 3.685 8 O -0.460 6.460 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.155 4.155 12 C -0.038 4.038 13 H 0.071 0.929 14 N -0.249 5.249 15 C -0.078 4.078 16 C 0.023 3.977 17 N -0.349 5.349 18 C -0.381 4.381 19 H 0.066 0.934 20 C -0.232 4.232 21 N -0.604 5.604 22 Si 0.781 3.219 23 H -0.192 1.192 24 H -0.241 1.241 25 H -0.190 1.190 26 C -0.001 4.001 27 C -0.073 4.073 28 C -0.004 4.004 29 N -0.147 5.147 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.123 0.877 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.434 23.978 -23.372 36.463 hybrid contribution 1.003 0.188 0.996 1.426 sum -13.432 24.166 -22.375 35.568 Atomic orbital electron populations 1.22124 0.72584 1.05877 1.04022 1.48892 1.07888 1.03689 1.56557 1.23221 0.90831 0.94701 1.00495 1.21746 0.98648 0.93365 1.17426 1.22030 0.92838 0.94895 1.00744 1.20109 0.95710 0.95401 0.97357 1.20737 0.80532 0.80531 0.86734 1.90731 1.34130 1.71884 1.49287 1.48513 1.22704 1.34469 1.29649 1.22359 0.84455 1.00224 0.95091 1.22723 1.00846 0.99632 0.92308 1.22753 0.94554 0.89360 0.97139 0.92901 1.61950 1.11081 1.26894 1.25005 1.22477 0.98627 0.97149 0.89592 1.21137 0.84293 0.93339 0.98956 1.44542 1.07027 1.71559 1.11723 1.18855 1.12443 1.20751 0.86015 0.93369 1.25921 0.97793 0.99150 1.00289 1.69974 1.17880 1.40037 1.32522 0.85843 0.78299 0.77128 0.80672 1.19202 1.24061 1.18970 1.21485 0.94740 0.95587 0.88282 1.22446 0.88145 0.95925 1.00738 1.22010 0.96319 0.91777 0.90244 1.77337 1.02654 1.09722 1.24963 0.90672 0.85866 0.89896 0.76988 0.81105 0.83482 0.85231 0.88244 0.88621 0.87920 0.89485 0.96092 0.89377 0.94520 0.92424 0.92912 0.94481 0.92628 0.87743 0.95831 0.91451 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.43 16 2 N -0.39 -7.34 4.01 -369.58 -1.48 -8.82 16 3 C 0.05 0.74 11.49 83.54 0.96 1.70 16 4 C -0.28 -4.54 10.72 21.99 0.24 -4.30 16 5 C 0.06 1.33 6.02 43.10 0.26 1.59 16 6 C -0.04 -0.70 5.47 29.10 0.16 -0.54 16 7 C 0.53 12.81 7.84 87.66 0.69 13.50 16 8 O -0.58 -20.65 15.82 -3.02 -0.05 -20.69 16 9 N -0.62 -12.69 3.33 -811.84 -2.70 -15.39 16 10 C 0.10 1.16 6.49 86.73 0.56 1.72 16 11 C -0.12 -1.75 5.62 31.78 0.18 -1.57 16 12 C 0.07 1.61 2.72 46.30 0.13 1.74 16 13 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 14 N -0.52 -15.48 4.53 -861.96 -3.90 -19.38 16 15 C 0.05 1.69 5.42 86.38 0.47 2.16 16 16 C 0.15 5.97 6.69 86.35 0.58 6.55 16 17 N -0.62 -30.02 2.82 -698.14 -1.97 -31.99 16 18 C -0.25 -14.57 10.08 84.04 0.85 -13.72 16 19 H 0.05 3.07 8.05 -2.91 -0.02 3.05 16 20 C -0.04 -2.18 5.24 84.86 0.45 -1.74 16 21 N -0.96 -60.80 13.97 21.65 0.30 -60.50 16 22 Si 0.95 46.72 24.31 68.60 1.67 48.39 16 23 H -0.27 -11.96 6.58 99.48 0.65 -11.30 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.26 -12.66 6.61 99.48 0.66 -12.00 16 26 C 0.12 5.19 4.35 86.35 0.38 5.57 16 27 C 0.06 1.82 5.52 86.38 0.48 2.30 16 28 C 0.12 2.97 5.03 86.85 0.44 3.41 16 29 N -0.32 -8.64 11.92 -47.39 -0.56 -9.21 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.15 1.14 8.12 -2.39 -0.02 1.13 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.16 7.97 -2.39 -0.02 1.14 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 2.59 6.60 -2.39 -0.02 2.58 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 2.36 7.95 -2.39 -0.02 2.34 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.04 1.53 6.94 -2.39 -0.02 1.52 16 47 H 0.06 2.54 4.61 -2.38 -0.01 2.52 16 48 H 0.10 2.61 7.11 -2.38 -0.02 2.59 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 51 H 0.05 1.56 7.77 -2.39 -0.02 1.55 16 Total: -1.00 -87.45 398.39 0.37 -87.08 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.81 Total: 9.74 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 8.26 Total: 20.77 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -10.32 Total: -145.28 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.69 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Total: -87.45 0.37 -87.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052027485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.363 kcal (2) G-P(sol) polarization free energy of solvation -87.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds