Wall clock time and date at job start Wed Apr 1 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34948 * 126.04116 * 2 1 4 4 C 1.35316 * 107.74565 * 180.15325 * 3 2 1 5 5 C 1.39874 * 107.92010 * 359.61498 * 4 3 2 6 6 C 1.50700 * 125.89735 * 180.22168 * 5 4 3 7 7 C 1.50697 * 109.47079 * 124.99723 * 6 5 4 8 8 O 1.21280 * 120.00435 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99926 * 179.97438 * 7 6 5 10 10 C 1.47016 * 125.64975 * 359.69244 * 9 7 6 11 11 C 1.54309 * 107.27836 * 180.96690 * 10 9 7 12 12 C 1.55160 * 102.86135 * 22.52661 * 11 10 9 13 13 H 1.08997 * 111.00321 * 82.37765 * 12 11 10 14 14 N 1.46896 * 111.03859 * 206.21137 * 12 11 10 15 15 C 1.46901 * 111.00370 * 296.24546 * 14 12 11 16 16 C 1.53234 * 109.34380 * 172.74448 * 15 14 12 17 17 N 1.47084 * 108.52043 * 53.82687 * 16 15 14 18 18 C 1.36935 * 120.87964 * 128.79189 * 17 16 15 19 19 H 1.07995 * 120.00378 * 208.79686 * 18 17 16 20 20 C 1.38815 * 119.99833 * 28.80589 * 18 17 16 21 21 N 1.31612 * 120.00224 * 14.68285 * 20 18 17 22 22 Si 1.86808 * 119.99898 * 194.68943 * 20 18 17 23 23 H 1.48505 * 109.46843 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47159 * 119.99271 * 22 20 18 25 25 H 1.48500 * 109.46727 * 239.99743 * 22 20 18 26 26 C 1.47080 * 118.23744 * 308.81578 * 17 16 15 27 27 C 1.46900 * 111.00067 * 171.93951 * 14 12 11 28 28 C 1.47429 * 125.64620 * 180.02562 * 9 7 6 29 29 N 1.30837 * 108.20338 * 0.23779 * 5 4 3 30 30 H 1.09003 * 109.46801 * 270.25490 * 1 2 3 31 31 H 1.08999 * 109.46882 * 30.25038 * 1 2 3 32 32 H 1.08995 * 109.47654 * 150.25538 * 1 2 3 33 33 H 1.07997 * 126.12724 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.04221 * 179.88272 * 4 3 2 35 35 H 1.09003 * 109.47106 * 244.99744 * 6 5 4 36 36 H 1.09001 * 109.47043 * 4.99913 * 6 5 4 37 37 H 1.09002 * 109.88031 * 300.51836 * 10 9 7 38 38 H 1.09001 * 109.87653 * 61.67673 * 10 9 7 39 39 H 1.08996 * 110.92751 * 264.11636 * 11 10 9 40 40 H 1.08996 * 110.74425 * 140.85596 * 11 10 9 41 41 H 1.09004 * 109.49079 * 292.70485 * 15 14 12 42 42 H 1.09001 * 109.49097 * 52.78199 * 15 14 12 43 43 H 1.09005 * 109.62855 * 294.11856 * 16 15 14 44 44 H 1.09000 * 109.63014 * 173.53967 * 16 15 14 45 45 H 0.97007 * 120.00186 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.62904 * 291.47211 * 26 17 16 47 47 H 1.09004 * 109.62532 * 170.89112 * 26 17 16 48 48 H 1.08999 * 109.49170 * 307.21443 * 27 14 12 49 49 H 1.09005 * 109.48928 * 67.27305 * 27 14 12 50 50 H 1.08996 * 110.36690 * 274.67303 * 28 9 7 51 51 H 1.09001 * 110.36287 * 36.99736 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0034 5 6 3.5346 -0.7323 0.0033 6 6 4.7496 -1.6238 0.0071 7 6 4.6729 -2.5724 1.1756 8 8 3.7249 -2.5291 1.9307 9 7 5.6575 -3.4696 1.3810 10 6 6.8544 -3.6351 0.5434 11 6 7.6796 -4.7911 1.1465 12 6 6.6197 -5.5888 1.9515 13 1 6.0635 -6.2649 1.3022 14 7 7.2427 -6.3226 3.0611 15 6 8.1790 -7.3380 2.5610 16 6 8.9384 -7.9533 3.7412 17 7 7.9588 -8.4409 4.7240 18 6 8.0273 -9.7193 5.2098 19 1 7.1280 -10.2241 5.5305 20 6 9.2527 -10.3665 5.2902 21 7 10.3690 -9.6780 5.1807 22 14 9.3173 -12.2148 5.5536 23 1 7.9352 -12.7504 5.6444 24 1 10.0220 -12.8531 4.4129 25 1 10.0459 -12.5099 6.8135 26 6 6.9034 -7.5190 5.1708 27 6 6.2240 -6.9209 3.9342 28 6 5.7093 -4.4522 2.4789 29 7 2.2891 -1.1329 0.0054 30 1 -0.3633 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3634 -0.8922 -0.5098 33 1 1.9283 2.1193 0.0004 34 1 4.4212 1.2961 -0.0061 35 1 4.7852 -2.1935 -0.9215 36 1 5.6482 -1.0130 0.0934 37 1 6.5613 -3.8795 -0.4776 38 1 7.4430 -2.7177 0.5528 39 1 8.4587 -4.4102 1.8067 40 1 8.1112 -5.4091 0.3592 41 1 7.6247 -8.1180 2.0388 42 1 8.8873 -6.8733 1.8752 43 1 9.5740 -7.1970 4.2019 44 1 9.5496 -8.7846 3.3899 45 1 11.2253 -10.1303 5.2365 46 1 7.3433 -6.7211 5.7689 47 1 6.1691 -8.0634 5.7646 48 1 5.5147 -6.1536 4.2444 49 1 5.6968 -7.7064 3.3927 50 1 6.1439 -4.0015 3.3712 51 1 4.7112 -4.8341 2.6935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052027486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:11 Heat of formation + Delta-G solvation = 90.983205 kcal Electronic energy + Delta-G solvation = -30398.394613 eV Core-core repulsion = 26335.785912 eV Total energy + Delta-G solvation = -4062.608701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43685 -40.08471 -38.41951 -36.73395 -34.17208 -34.07048 -31.78623 -30.89669 -30.33260 -30.21035 -29.68852 -28.31731 -26.35129 -25.55418 -23.70402 -22.80636 -22.15790 -21.40933 -20.61294 -20.18762 -19.12817 -18.95597 -17.30871 -17.15416 -17.03007 -16.23489 -15.65994 -15.54392 -15.03249 -14.69270 -14.37245 -14.22396 -14.07735 -14.01372 -13.74504 -13.41791 -13.33334 -13.31755 -13.03140 -13.00006 -12.70625 -12.60522 -12.53412 -12.33737 -12.08892 -11.81003 -11.27868 -11.16552 -11.02156 -10.85003 -10.77668 -10.74743 -10.40432 -10.26509 -10.03420 -9.91882 -9.72734 -9.56921 -9.44171 -8.79310 -8.67781 -8.50613 -7.87312 -6.62095 -5.77108 -3.20563 1.67809 2.26537 2.45441 2.60841 2.98550 3.37437 3.45325 3.47564 4.14042 4.26753 4.32922 4.48429 4.50997 4.59897 4.63846 4.82046 4.82492 4.89449 5.00800 5.07471 5.15514 5.26667 5.33465 5.39957 5.41745 5.47098 5.49461 5.54480 5.75197 5.77639 5.86050 5.89243 5.92338 5.99542 6.11959 6.17817 6.21443 6.29436 6.35360 6.39145 6.55073 6.71028 6.76578 6.95668 7.24505 7.44062 7.52987 7.59029 7.64475 7.70839 7.82871 8.13646 8.46114 9.23169 9.85603 10.45182 11.31701 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.001796 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.381380 B =15590.688455 C =16143.979673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.049 3.951 4 C -0.266 4.266 5 C 0.082 3.918 6 C -0.053 4.053 7 C 0.531 3.469 8 O -0.525 6.525 9 N -0.620 5.620 10 C 0.101 3.899 11 C -0.123 4.123 12 C 0.068 3.932 13 H 0.050 0.950 14 N -0.521 5.521 15 C 0.036 3.964 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.118 3.882 29 N -0.263 5.263 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.079 0.921 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.299 22.057 -15.494 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.097 4.097 4 C -0.295 4.295 5 C -0.086 4.086 6 C -0.095 4.095 7 C 0.318 3.682 8 O -0.400 6.400 9 N -0.356 5.356 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.042 4.042 13 H 0.068 0.932 14 N -0.246 5.246 15 C -0.093 4.093 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.088 4.088 28 C -0.005 4.005 29 N -0.085 5.085 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.424 21.405 -14.786 29.274 hybrid contribution 0.195 -0.743 -0.375 0.855 sum -13.229 20.662 -15.161 28.840 Atomic orbital electron populations 1.21840 0.74296 1.04306 1.03468 1.48550 1.06674 1.03877 1.56878 1.22489 0.91141 0.93459 1.02570 1.21340 0.97171 0.93979 1.17030 1.21534 0.92720 0.93406 1.00912 1.19984 0.95061 0.95952 0.98469 1.19998 0.81251 0.80532 0.86435 1.90754 1.31955 1.69956 1.47325 1.48444 1.21906 1.35629 1.29617 1.22089 0.86128 0.99428 0.94551 1.22684 0.97966 0.95682 0.99782 1.22747 0.94353 0.94273 0.92784 0.93249 1.62020 1.17467 1.28235 1.16867 1.22917 0.94903 0.91917 0.99522 1.20845 0.90153 0.97201 0.86453 1.44105 1.31188 1.09999 1.46579 1.19228 0.92182 0.88882 1.37761 0.91729 1.25083 0.95604 0.98378 1.00578 1.70015 0.96683 1.33864 1.54276 0.86225 0.77546 0.85616 0.77394 1.20319 1.21606 1.21692 1.20981 0.91571 0.92721 0.92487 1.22675 0.93276 0.96735 0.96111 1.22203 1.00063 0.88333 0.89892 1.77447 1.01220 1.07206 1.22641 0.90730 0.89554 0.89306 0.80998 0.83454 0.87384 0.86954 0.91406 0.91052 0.89090 0.90126 0.95707 0.91904 0.95484 0.89515 0.93690 0.95588 0.92608 0.91844 0.95347 0.90244 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.86 4.01 -68.16 -0.27 -4.13 16 3 C 0.05 0.41 11.49 -17.22 -0.20 0.21 16 4 C -0.27 -2.51 10.72 -40.01 -0.43 -2.93 16 5 C 0.08 0.97 6.02 -82.40 -0.50 0.47 16 6 C -0.05 -0.51 5.47 -29.04 -0.16 -0.67 16 7 C 0.53 7.12 7.84 -10.98 -0.09 7.04 16 8 O -0.52 -9.43 15.82 5.56 0.09 -9.34 16 9 N -0.62 -7.55 3.33 -170.55 -0.57 -8.12 16 10 C 0.10 0.90 6.48 -3.08 -0.02 0.88 16 11 C -0.12 -1.32 5.44 -24.90 -0.14 -1.46 16 12 C 0.07 0.94 2.71 -65.58 -0.18 0.76 16 13 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 14 N -0.52 -8.92 4.53 -223.79 -1.01 -9.93 16 15 C 0.04 0.68 5.49 -3.70 -0.02 0.66 16 16 C 0.18 4.26 5.39 -3.60 -0.02 4.24 16 17 N -0.60 -15.08 3.03 -172.01 -0.52 -15.60 16 18 C -0.25 -6.93 9.62 -15.06 -0.14 -7.07 16 19 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 20 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 21 N -0.90 -26.17 11.17 55.49 0.62 -25.55 16 22 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 27 C 0.04 0.75 5.46 -3.70 -0.02 0.73 16 28 C 0.12 1.64 5.23 -2.54 -0.01 1.62 16 29 N -0.26 -3.61 11.92 33.67 0.40 -3.21 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.11 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.28 6.22 -51.93 -0.32 1.96 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 48 H 0.06 1.03 6.73 -51.93 -0.35 0.68 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.07 1.13 7.74 -51.93 -0.40 0.72 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -36.34 404.98 -10.11 -46.45 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.57 Total: -2.30 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -1.34 Total: 8.92 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.35 Total: -66.54 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.34 -10.11 -46.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052027486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.433 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds