Wall clock time and date at job start Wed Apr 1 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34948 * 126.04116 * 2 1 4 4 C 1.35316 * 107.74565 * 180.15325 * 3 2 1 5 5 C 1.39874 * 107.92010 * 359.61498 * 4 3 2 6 6 C 1.50700 * 125.89735 * 180.22168 * 5 4 3 7 7 C 1.50697 * 109.47079 * 124.99723 * 6 5 4 8 8 O 1.21280 * 120.00435 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99926 * 179.97438 * 7 6 5 10 10 C 1.47016 * 125.64975 * 359.69244 * 9 7 6 11 11 C 1.54309 * 107.27836 * 180.96690 * 10 9 7 12 12 C 1.55160 * 102.86135 * 22.52661 * 11 10 9 13 13 H 1.08997 * 111.00321 * 82.37765 * 12 11 10 14 14 N 1.46896 * 111.03859 * 206.21137 * 12 11 10 15 15 C 1.46901 * 111.00370 * 296.24546 * 14 12 11 16 16 C 1.53234 * 109.34380 * 172.74448 * 15 14 12 17 17 N 1.47084 * 108.52043 * 53.82687 * 16 15 14 18 18 C 1.36935 * 120.87964 * 128.79189 * 17 16 15 19 19 H 1.07995 * 120.00378 * 208.79686 * 18 17 16 20 20 C 1.38815 * 119.99833 * 28.80589 * 18 17 16 21 21 N 1.31612 * 120.00224 * 14.68285 * 20 18 17 22 22 Si 1.86808 * 119.99898 * 194.68943 * 20 18 17 23 23 H 1.48505 * 109.46843 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47159 * 119.99271 * 22 20 18 25 25 H 1.48500 * 109.46727 * 239.99743 * 22 20 18 26 26 C 1.47080 * 118.23744 * 308.81578 * 17 16 15 27 27 C 1.46900 * 111.00067 * 171.93951 * 14 12 11 28 28 C 1.47429 * 125.64620 * 180.02562 * 9 7 6 29 29 N 1.30837 * 108.20338 * 0.23779 * 5 4 3 30 30 H 1.09003 * 109.46801 * 270.25490 * 1 2 3 31 31 H 1.08999 * 109.46882 * 30.25038 * 1 2 3 32 32 H 1.08995 * 109.47654 * 150.25538 * 1 2 3 33 33 H 1.07997 * 126.12724 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.04221 * 179.88272 * 4 3 2 35 35 H 1.09003 * 109.47106 * 244.99744 * 6 5 4 36 36 H 1.09001 * 109.47043 * 4.99913 * 6 5 4 37 37 H 1.09002 * 109.88031 * 300.51836 * 10 9 7 38 38 H 1.09001 * 109.87653 * 61.67673 * 10 9 7 39 39 H 1.08996 * 110.92751 * 264.11636 * 11 10 9 40 40 H 1.08996 * 110.74425 * 140.85596 * 11 10 9 41 41 H 1.09004 * 109.49079 * 292.70485 * 15 14 12 42 42 H 1.09001 * 109.49097 * 52.78199 * 15 14 12 43 43 H 1.09005 * 109.62855 * 294.11856 * 16 15 14 44 44 H 1.09000 * 109.63014 * 173.53967 * 16 15 14 45 45 H 0.97007 * 120.00186 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.62904 * 291.47211 * 26 17 16 47 47 H 1.09004 * 109.62532 * 170.89112 * 26 17 16 48 48 H 1.08999 * 109.49170 * 307.21443 * 27 14 12 49 49 H 1.09005 * 109.48928 * 67.27305 * 27 14 12 50 50 H 1.08996 * 110.36690 * 274.67303 * 28 9 7 51 51 H 1.09001 * 110.36287 * 36.99736 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0034 5 6 3.5346 -0.7323 0.0033 6 6 4.7496 -1.6238 0.0071 7 6 4.6729 -2.5724 1.1756 8 8 3.7249 -2.5291 1.9307 9 7 5.6575 -3.4696 1.3810 10 6 6.8544 -3.6351 0.5434 11 6 7.6796 -4.7911 1.1465 12 6 6.6197 -5.5888 1.9515 13 1 6.0635 -6.2649 1.3022 14 7 7.2427 -6.3226 3.0611 15 6 8.1790 -7.3380 2.5610 16 6 8.9384 -7.9533 3.7412 17 7 7.9588 -8.4409 4.7240 18 6 8.0273 -9.7193 5.2098 19 1 7.1280 -10.2241 5.5305 20 6 9.2527 -10.3665 5.2902 21 7 10.3690 -9.6780 5.1807 22 14 9.3173 -12.2148 5.5536 23 1 7.9352 -12.7504 5.6444 24 1 10.0220 -12.8531 4.4129 25 1 10.0459 -12.5099 6.8135 26 6 6.9034 -7.5190 5.1708 27 6 6.2240 -6.9209 3.9342 28 6 5.7093 -4.4522 2.4789 29 7 2.2891 -1.1329 0.0054 30 1 -0.3633 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3634 -0.8922 -0.5098 33 1 1.9283 2.1193 0.0004 34 1 4.4212 1.2961 -0.0061 35 1 4.7852 -2.1935 -0.9215 36 1 5.6482 -1.0130 0.0934 37 1 6.5613 -3.8795 -0.4776 38 1 7.4430 -2.7177 0.5528 39 1 8.4587 -4.4102 1.8067 40 1 8.1112 -5.4091 0.3592 41 1 7.6247 -8.1180 2.0388 42 1 8.8873 -6.8733 1.8752 43 1 9.5740 -7.1970 4.2019 44 1 9.5496 -8.7846 3.3899 45 1 11.2253 -10.1303 5.2365 46 1 7.3433 -6.7211 5.7689 47 1 6.1691 -8.0634 5.7646 48 1 5.5147 -6.1536 4.2444 49 1 5.6968 -7.7064 3.3927 50 1 6.1439 -4.0015 3.3712 51 1 4.7112 -4.8341 2.6935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052027486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:10 Heat of formation + Delta-G solvation = 65.323163 kcal Electronic energy + Delta-G solvation = -30399.507316 eV Core-core repulsion = 26335.785912 eV Total energy + Delta-G solvation = -4063.721404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12334 -41.11055 -39.76405 -38.07117 -35.80515 -34.77883 -33.43060 -31.98251 -31.81522 -31.16580 -30.59149 -29.50889 -27.76536 -26.52489 -25.05980 -24.45030 -23.53052 -22.03549 -21.66626 -21.18741 -20.80252 -19.81607 -18.81921 -18.17705 -17.83951 -17.52485 -16.83368 -16.48927 -16.34601 -15.99769 -15.62847 -15.45112 -15.28625 -15.25612 -14.96153 -14.85581 -14.56639 -14.47414 -14.04245 -13.84931 -13.73526 -13.53026 -13.37790 -13.28378 -13.12780 -12.97398 -12.85890 -12.69908 -12.54332 -12.50264 -12.15119 -12.01117 -11.87729 -11.78278 -11.50844 -11.43904 -11.35813 -10.94114 -10.60118 -10.18549 -9.65671 -9.43937 -9.32432 -8.65552 -7.87900 -5.35105 1.01385 1.45548 1.47044 1.57748 1.64050 1.66281 1.75933 2.11826 2.50019 2.96947 3.27981 3.36402 3.56199 3.67479 3.72620 3.89211 3.94342 4.08434 4.18833 4.21957 4.32012 4.34335 4.40136 4.41220 4.43028 4.51136 4.56438 4.59746 4.66876 4.67807 4.68855 4.82855 4.85246 4.87759 4.91022 4.94806 5.02499 5.04797 5.15595 5.19341 5.23967 5.31451 5.37114 5.61496 5.70729 5.71733 6.13131 6.23403 6.24362 6.38553 6.53199 6.83464 7.14208 7.16689 7.83177 8.38331 9.18821 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.001796 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.381380 B =15590.688455 C =16143.979673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 C 0.054 3.946 4 C -0.282 4.282 5 C 0.062 3.938 6 C -0.045 4.045 7 C 0.525 3.475 8 O -0.581 6.581 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.118 4.118 12 C 0.070 3.930 13 H 0.049 0.951 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.186 3.814 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.291 1.291 26 C 0.146 3.854 27 C 0.054 3.946 28 C 0.122 3.878 29 N -0.324 5.324 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.214 0.786 34 H 0.172 0.828 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.017 0.983 42 H 0.093 0.907 43 H 0.002 0.998 44 H 0.057 0.943 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.021 0.979 50 H 0.067 0.933 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 23.990 -17.776 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.092 4.092 4 C -0.311 4.311 5 C -0.105 4.105 6 C -0.086 4.086 7 C 0.315 3.685 8 O -0.460 6.460 9 N -0.353 5.353 10 C -0.020 4.020 11 C -0.156 4.156 12 C -0.039 4.039 13 H 0.067 0.933 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.075 4.075 28 C -0.001 4.001 29 N -0.148 5.148 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.231 0.769 34 H 0.189 0.811 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.111 0.889 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.533 23.349 -17.100 31.949 hybrid contribution 0.169 -1.265 0.389 1.334 sum -13.364 22.084 -16.710 30.749 Atomic orbital electron populations 1.22125 0.72586 1.05861 1.04026 1.48895 1.07884 1.03684 1.56571 1.23221 0.90814 0.94706 1.00474 1.21749 0.98676 0.93321 1.17398 1.22023 0.92803 0.94925 1.00720 1.20109 0.95792 0.95481 0.97198 1.20748 0.80354 0.80636 0.86781 1.90726 1.34197 1.71576 1.49533 1.48525 1.22775 1.34690 1.29321 1.22340 0.84726 1.00045 0.94874 1.22710 0.97106 0.96035 0.99710 1.22748 0.95487 0.93870 0.91794 0.93342 1.61936 1.17438 1.27437 1.18292 1.22587 0.95248 0.92187 0.97400 1.20636 0.90100 0.95555 0.87676 1.44384 1.32056 1.10096 1.47304 1.19518 0.92280 0.90166 1.37598 0.91946 1.25829 0.95232 1.02489 1.00808 1.70166 0.96994 1.35386 1.55374 0.85196 0.77686 0.80507 0.76957 1.19430 1.21335 1.21822 1.21083 0.90820 0.91965 0.94120 1.22452 0.93292 0.96962 0.94820 1.21975 0.98776 0.88897 0.90491 1.77342 1.02675 1.09752 1.25002 0.90666 0.85840 0.89932 0.76933 0.81057 0.85279 0.83421 0.88692 0.88023 0.89614 0.88258 0.96431 0.88887 0.98016 0.92494 0.93960 0.96528 0.92536 0.89923 0.96049 0.91436 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 11.47 127.77 1.47 2.48 16 2 N -0.39 -7.56 4.01 -369.57 -1.48 -9.04 16 3 C 0.05 0.77 11.49 83.54 0.96 1.73 16 4 C -0.28 -4.71 10.72 21.99 0.24 -4.47 16 5 C 0.06 1.38 6.02 43.10 0.26 1.64 16 6 C -0.04 -0.75 5.47 29.10 0.16 -0.59 16 7 C 0.53 13.55 7.84 87.65 0.69 14.24 16 8 O -0.58 -21.34 15.82 -3.03 -0.05 -21.39 16 9 N -0.62 -13.89 3.33 -811.87 -2.70 -16.59 16 10 C 0.10 1.40 6.48 86.72 0.56 1.96 16 11 C -0.12 -2.14 5.44 31.78 0.17 -1.97 16 12 C 0.07 1.83 2.71 46.30 0.13 1.95 16 13 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 14 N -0.53 -17.64 4.53 -861.94 -3.90 -21.55 16 15 C 0.05 2.02 5.49 86.38 0.47 2.49 16 16 C 0.19 9.05 5.39 86.35 0.47 9.51 16 17 N -0.61 -31.90 3.03 -698.12 -2.11 -34.01 16 18 C -0.27 -14.97 9.62 84.03 0.81 -14.16 16 19 H 0.06 3.47 7.87 -2.91 -0.02 3.44 16 20 C -0.05 -2.71 4.98 84.86 0.42 -2.29 16 21 N -0.93 -55.40 11.17 21.65 0.24 -55.15 16 22 Si 0.97 45.30 29.58 68.60 2.03 47.33 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.15 6.42 6.69 86.35 0.58 7.00 16 27 C 0.05 1.96 5.46 86.38 0.47 2.44 16 28 C 0.12 3.33 5.23 86.85 0.45 3.78 16 29 N -0.32 -8.91 11.92 -47.38 -0.56 -9.48 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.15 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 1.49 7.94 -2.39 -0.02 1.47 16 41 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.09 2.86 6.93 -2.39 -0.02 2.84 16 43 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 44 H 0.06 3.09 6.22 -2.39 -0.01 3.07 16 45 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 2.42 7.95 -2.38 -0.02 2.40 16 48 H 0.08 2.68 6.73 -2.39 -0.02 2.66 16 49 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.05 1.66 7.74 -2.39 -0.02 1.64 16 Total: -1.00 -84.03 404.98 0.66 -83.37 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.90 Total: 10.78 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 8.30 Total: 25.74 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -10.53 Total: -145.83 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -84.03 0.66 -83.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052027486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.694 kcal (2) G-P(sol) polarization free energy of solvation -84.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds