Wall clock time and date at job start Wed Apr 1 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35045 * 126.39702 * 2 1 4 4 N 1.30494 * 108.70160 * 180.02562 * 3 2 1 5 5 C 1.34127 * 109.25371 * 0.02562 * 4 3 2 6 6 C 1.34666 * 108.02256 * 359.73252 * 5 4 3 7 7 C 1.50709 * 126.59238 * 180.28302 * 6 5 4 8 8 C 1.50699 * 109.47016 * 85.16391 * 7 6 5 9 9 O 1.21276 * 120.00205 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99863 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64479 * 359.70365 * 10 8 7 12 12 C 1.54320 * 107.27356 * 180.96487 * 11 10 8 13 13 C 1.55159 * 102.86180 * 22.51871 * 12 11 10 14 14 H 1.09006 * 111.00168 * 82.38370 * 13 12 11 15 15 N 1.46896 * 111.03829 * 206.21523 * 13 12 11 16 16 C 1.46903 * 111.00213 * 296.24122 * 15 13 12 17 17 C 1.53242 * 109.34130 * 172.74210 * 16 15 13 18 18 N 1.47084 * 108.51805 * 53.83222 * 17 16 15 19 19 C 1.36936 * 120.87745 * 128.79483 * 18 17 16 20 20 H 1.08000 * 119.99248 * 208.80442 * 19 18 17 21 21 C 1.38806 * 120.00100 * 28.80235 * 19 18 17 22 22 N 1.31620 * 120.00305 * 14.67794 * 21 19 18 23 23 Si 1.86810 * 120.00015 * 194.67090 * 21 19 18 24 24 H 1.48500 * 109.46648 * 59.99951 * 23 21 19 25 25 H 1.48494 * 109.47222 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47048 * 300.00387 * 23 21 19 27 27 C 1.47073 * 118.23777 * 308.81331 * 18 17 16 28 28 C 1.46895 * 111.00362 * 171.93939 * 15 13 12 29 29 C 1.47416 * 125.64890 * 180.02562 * 10 8 7 30 30 H 1.09006 * 109.47226 * 90.02075 * 1 2 3 31 31 H 1.08998 * 109.47117 * 330.02199 * 1 2 3 32 32 H 1.09000 * 109.46975 * 210.01606 * 1 2 3 33 33 H 1.08000 * 125.64867 * 359.96729 * 3 2 1 34 34 H 1.08001 * 125.98709 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.46561 * 205.16520 * 7 6 5 36 36 H 1.09004 * 109.46729 * 325.16551 * 7 6 5 37 37 H 1.09004 * 109.87750 * 300.50073 * 11 10 8 38 38 H 1.08993 * 109.88451 * 61.67321 * 11 10 8 39 39 H 1.08996 * 110.92217 * 264.10766 * 12 11 10 40 40 H 1.08997 * 110.74338 * 140.85034 * 12 11 10 41 41 H 1.08995 * 109.49200 * 292.70439 * 16 15 13 42 42 H 1.09005 * 109.48766 * 52.78849 * 16 15 13 43 43 H 1.09000 * 109.62759 * 294.12640 * 17 16 15 44 44 H 1.09002 * 109.62702 * 173.54148 * 17 16 15 45 45 H 0.97007 * 119.99770 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.63154 * 291.47521 * 27 18 17 47 47 H 1.09004 * 109.62950 * 170.89647 * 27 18 17 48 48 H 1.09003 * 109.49136 * 307.21613 * 28 15 13 49 49 H 1.08999 * 109.49601 * 67.26648 * 28 15 13 50 50 H 1.09005 * 110.36965 * 274.67716 * 29 10 8 51 51 H 1.08997 * 110.36891 * 37.00204 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5460 -0.6504 -0.0015 6 6 2.2773 -1.1017 0.0045 7 6 1.8364 -2.5429 0.0118 8 6 1.8085 -3.0524 1.4297 9 8 2.1159 -2.3177 2.3443 10 7 1.4410 -4.3245 1.6816 11 6 1.0389 -5.3158 0.6730 12 6 0.6846 -6.6162 1.4245 13 6 0.3558 -6.1104 2.8540 14 1 -0.6692 -5.7443 2.9128 15 7 0.5948 -7.1606 3.8529 16 6 -0.3041 -8.3030 3.6413 17 6 0.0959 -9.4447 4.5819 18 7 0.1293 -8.9263 5.9580 19 6 -0.5399 -9.5665 6.9666 20 1 -0.9085 -9.0042 7.8118 21 6 -0.7445 -10.9379 6.9027 22 7 -0.0632 -11.6656 6.0432 23 14 -1.9867 -11.7508 8.0366 24 1 -3.3332 -11.1752 7.7895 25 1 -2.0162 -13.2118 7.7724 26 1 -1.5978 -11.5116 9.4496 27 6 0.9003 -7.7018 6.2217 28 6 0.4686 -6.6288 5.2164 29 6 1.3693 -4.9502 3.0144 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5141 33 1 1.9334 2.1144 -0.0005 34 1 4.4368 -1.2610 -0.0025 35 1 0.8393 -2.6199 -0.4217 36 1 2.5348 -3.1394 -0.5751 37 1 0.1695 -4.9542 0.1239 38 1 1.8640 -5.5005 -0.0148 39 1 1.5340 -7.2990 1.4429 40 1 -0.1849 -7.0967 0.9759 41 1 -1.3305 -8.0018 3.8507 42 1 -0.2271 -8.6397 2.6074 43 1 1.0827 -9.8170 4.3069 44 1 -0.6352 -10.2501 4.5117 45 1 -0.2060 -12.6241 5.9989 46 1 1.9645 -7.9067 6.1043 47 1 0.7010 -7.3550 7.2357 48 1 1.1060 -5.7512 5.3250 49 1 -0.5684 -6.3505 5.4038 50 1 2.3460 -5.3374 3.3048 51 1 1.0104 -4.2322 3.7518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052107907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:48 Heat of formation + Delta-G solvation = 50.567118 kcal Electronic energy + Delta-G solvation = -30737.948246 eV Core-core repulsion = 26673.586972 eV Total energy + Delta-G solvation = -4064.361274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.04799 -41.18541 -39.79433 -38.09479 -35.81882 -34.96592 -33.60981 -33.09136 -31.82892 -31.48309 -29.79219 -28.38002 -27.79283 -27.23976 -25.09822 -24.45832 -23.55812 -22.40483 -21.69121 -21.27172 -20.81066 -20.00402 -18.82891 -18.29125 -17.96374 -17.56397 -16.85412 -16.71076 -16.32102 -16.05148 -15.61765 -15.57644 -15.30342 -15.27097 -15.07146 -14.96700 -14.60954 -14.54126 -14.02353 -13.97452 -13.81053 -13.67163 -13.59477 -13.36975 -13.30448 -13.00612 -12.95741 -12.67522 -12.56166 -12.51573 -12.19649 -12.02757 -11.88060 -11.79421 -11.44771 -11.37432 -11.07586 -10.94136 -10.58899 -10.47114 -9.70103 -9.32509 -9.31841 -8.65586 -7.87953 -5.35235 0.98664 1.46807 1.48063 1.55434 1.56279 1.84706 2.00679 2.24919 2.50118 2.96554 3.27812 3.35366 3.56108 3.67051 3.71307 3.87394 3.91104 3.92914 4.05673 4.13218 4.21345 4.31709 4.34866 4.39185 4.40224 4.42527 4.54356 4.55774 4.59270 4.66510 4.68364 4.69307 4.82004 4.82334 4.87492 4.92561 5.02090 5.04255 5.18675 5.20464 5.29018 5.36673 5.37705 5.60862 5.70552 5.77527 6.12690 6.24855 6.30673 6.38273 6.49390 7.09572 7.12742 7.14062 7.83225 8.38130 9.18429 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.001863 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.189521 B =15025.961059 C =15224.592956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.456 5.456 3 C 0.179 3.821 4 N -0.540 5.540 5 C -0.042 4.042 6 C -0.013 4.013 7 C -0.047 4.047 8 C 0.525 3.475 9 O -0.584 6.584 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.119 4.119 13 C 0.071 3.929 14 H 0.053 0.947 15 N -0.528 5.528 16 C 0.056 3.944 17 C 0.185 3.815 18 N -0.614 5.614 19 C -0.267 4.267 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.145 3.855 28 C 0.055 3.945 29 C 0.121 3.879 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.019 0.981 42 H 0.092 0.908 43 H 0.000 1.000 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.015 0.985 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 19.900 -20.357 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.138 5.138 3 C -0.103 4.103 4 N -0.258 5.258 5 C -0.190 4.190 6 C -0.128 4.128 7 C -0.088 4.088 8 C 0.314 3.686 9 O -0.463 6.463 10 N -0.350 5.350 11 C -0.020 4.020 12 C -0.157 4.157 13 C -0.038 4.038 14 H 0.070 0.930 15 N -0.253 5.253 16 C -0.073 4.073 17 C 0.060 3.940 18 N -0.338 5.338 19 C -0.397 4.397 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.019 3.981 28 C -0.074 4.074 29 C -0.003 4.003 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.183 0.817 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.037 0.963 42 H 0.111 0.889 43 H 0.018 0.982 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.581 20.541 -19.971 28.693 hybrid contribution -1.707 -1.054 1.400 2.447 sum -3.288 19.487 -18.571 27.119 Atomic orbital electron populations 1.22342 0.74335 1.05707 1.05307 1.45474 1.08955 1.06009 1.53407 1.25545 0.85119 0.94852 1.04771 1.70197 1.21557 1.12653 1.21431 1.22223 0.96757 0.91337 1.08696 1.20702 0.91110 0.89791 1.11246 1.20062 1.06818 0.89171 0.92727 1.20795 0.75979 0.79715 0.92074 1.90745 1.50198 1.56802 1.48581 1.48523 1.66503 1.11033 1.08910 1.22348 1.02120 0.86762 0.90746 1.22719 1.03622 0.97148 0.92248 1.22750 0.96582 0.90950 0.93540 0.92960 1.61922 1.53563 1.07441 1.02387 1.22573 0.92776 0.91700 1.00288 1.20640 0.97647 0.93301 0.82442 1.44376 1.56895 1.27685 1.04891 1.19446 1.28338 0.90004 1.01906 0.91912 1.25840 1.01203 0.96749 1.00619 1.70157 1.42159 1.05222 1.40367 0.85324 0.79287 0.76900 0.78787 1.20356 1.21785 1.20367 1.21092 0.93657 0.86819 0.96522 1.22439 0.98812 0.97268 0.88902 1.21997 0.99422 0.93582 0.85256 0.87804 0.87644 0.90058 0.74700 0.81662 0.84976 0.83849 0.88185 0.88379 0.89932 0.88190 0.96290 0.88939 0.98175 0.92517 0.93969 0.96690 0.92545 0.89845 0.95880 0.91645 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.83 127.77 1.38 1.78 16 2 N -0.46 -7.03 3.15 -537.87 -1.70 -8.72 16 3 C 0.18 3.20 12.56 180.26 2.26 5.47 16 4 N -0.54 -13.75 11.25 -200.32 -2.25 -16.01 16 5 C -0.04 -1.00 11.79 83.52 0.98 -0.02 16 6 C -0.01 -0.23 5.45 40.95 0.22 -0.01 16 7 C -0.05 -0.57 5.07 29.10 0.15 -0.42 16 8 C 0.52 10.98 7.84 87.66 0.69 11.67 16 9 O -0.58 -18.65 16.29 -3.02 -0.05 -18.70 16 10 N -0.62 -11.42 3.33 -811.86 -2.70 -14.12 16 11 C 0.10 1.07 6.48 86.73 0.56 1.64 16 12 C -0.12 -1.89 5.44 31.78 0.17 -1.71 16 13 C 0.07 1.64 2.71 46.30 0.13 1.77 16 14 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 15 N -0.53 -16.70 4.53 -861.93 -3.90 -20.60 16 16 C 0.06 1.96 5.49 86.38 0.47 2.43 16 17 C 0.19 8.82 5.39 86.35 0.47 9.28 16 18 N -0.61 -31.25 3.03 -698.11 -2.11 -33.36 16 19 C -0.27 -14.79 9.62 84.03 0.81 -13.98 16 20 H 0.06 3.41 7.87 -2.91 -0.02 3.38 16 21 C -0.05 -2.70 4.98 84.86 0.42 -2.28 16 22 N -0.93 -54.77 11.17 21.65 0.24 -54.53 16 23 Si 0.97 44.60 29.58 68.60 2.03 46.63 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.14 6.20 6.69 86.35 0.58 6.77 16 28 C 0.06 1.90 5.46 86.38 0.47 2.37 16 29 C 0.12 2.91 5.23 86.85 0.45 3.37 16 30 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.56 7.67 -2.39 -0.02 0.54 16 33 H 0.24 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.13 0.69 7.63 -2.39 -0.02 0.67 16 36 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.26 7.94 -2.39 -0.02 1.24 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 42 H 0.09 2.70 6.93 -2.38 -0.02 2.68 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 3.02 6.22 -2.39 -0.01 3.00 16 45 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 46 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.06 2.35 7.95 -2.38 -0.02 2.33 16 48 H 0.08 2.53 6.73 -2.39 -0.02 2.52 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.06 1.57 7.74 -2.39 -0.02 1.55 16 Total: -1.00 -81.93 403.50 0.69 -81.25 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.91 Total: 10.03 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 10.23 Total: 28.13 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -12.43 Total: -147.33 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -81.93 0.69 -81.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052107907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.814 kcal (2) G-P(sol) polarization free energy of solvation -81.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds