Wall clock time and date at job start Wed Apr 1 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.29108 * 126.00785 * 2 1 4 4 N 1.29018 * 110.26186 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63523 * 0.02562 * 4 3 2 6 6 C 1.34395 * 126.00704 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25725 * 359.85041 * 6 2 1 8 8 C 1.53433 * 108.32457 * 196.44249 * 7 6 2 9 9 H 1.09006 * 109.45971 * 70.29502 * 8 7 6 10 10 C 1.50704 * 109.45537 * 190.25705 * 8 7 6 11 11 O 1.21278 * 120.00229 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99599 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99544 * 180.02562 * 12 10 8 14 14 H 1.08999 * 108.45118 * 327.31249 * 13 12 10 15 15 C 1.52568 * 108.38974 * 209.68907 * 13 12 10 16 16 C 1.50890 * 109.35932 * 153.82458 * 15 13 12 17 17 C 1.54295 * 110.23472 * 91.80048 * 16 15 13 18 18 N 1.47606 * 111.94066 * 319.70415 * 17 16 15 19 19 C 1.36930 * 118.64663 * 137.78049 * 18 17 16 20 20 H 1.08000 * 120.00355 * 207.78552 * 19 18 17 21 21 C 1.38820 * 119.99724 * 27.78538 * 19 18 17 22 22 N 1.31618 * 119.99784 * 200.38187 * 21 19 18 23 23 Si 1.86801 * 119.99895 * 20.38442 * 21 19 18 24 24 H 1.48501 * 109.46731 * 269.99831 * 23 21 19 25 25 H 1.48503 * 109.46752 * 150.00090 * 23 21 19 26 26 H 1.48497 * 109.47174 * 29.99855 * 23 21 19 27 27 C 1.44583 * 122.71138 * 317.49223 * 18 17 16 28 28 C 1.47093 * 108.51238 * 85.00363 * 13 12 10 29 29 C 1.53109 * 109.55928 * 310.28488 * 8 7 6 30 30 C 1.50598 * 129.16255 * 179.77954 * 5 4 3 31 31 H 1.09004 * 109.47648 * 270.00164 * 1 2 3 32 32 H 1.08996 * 109.47117 * 30.00775 * 1 2 3 33 33 H 1.09003 * 109.47247 * 150.00824 * 1 2 3 34 34 H 1.09000 * 109.69114 * 76.73604 * 7 6 2 35 35 H 1.08998 * 109.69469 * 316.15216 * 7 6 2 36 36 H 0.97000 * 120.00503 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.49386 * 273.79183 * 15 13 12 38 38 H 1.09002 * 109.48986 * 33.83877 * 15 13 12 39 39 H 1.08994 * 109.36312 * 212.08258 * 16 15 13 40 40 H 1.09000 * 109.36528 * 331.82343 * 16 15 13 41 41 H 1.08994 * 109.14059 * 199.01662 * 17 16 15 42 42 H 1.08993 * 108.96107 * 80.26739 * 17 16 15 43 43 H 0.97003 * 120.00092 * 354.89343 * 22 21 19 44 44 H 1.09002 * 109.45229 * 211.02906 * 27 18 17 45 45 H 1.09001 * 109.45194 * 330.95076 * 27 18 17 46 46 H 1.08999 * 109.32716 * 63.63518 * 28 13 12 47 47 H 1.08996 * 109.32838 * 304.15471 * 28 13 12 48 48 H 1.08998 * 109.45694 * 190.10060 * 29 8 7 49 49 H 1.09006 * 109.44617 * 310.03256 * 29 8 7 50 50 H 1.08994 * 109.69159 * 316.34184 * 30 5 4 51 51 H 1.09003 * 109.68339 * 76.87785 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2239 1.0444 0.0000 4 7 3.4657 0.6943 -0.0005 5 6 3.5327 -0.6331 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0042 8 6 3.1013 -3.3640 0.4155 9 1 3.3141 -3.1952 1.4712 10 6 2.8265 -4.8280 0.1867 11 8 1.7561 -5.1815 -0.2607 12 7 3.7708 -5.7445 0.4784 13 6 3.5039 -7.1676 0.2555 14 1 2.4433 -7.3508 0.4278 15 6 4.3061 -7.9730 1.2731 16 6 3.6186 -9.2932 1.5202 17 6 4.1705 -10.3698 0.5626 18 7 4.3922 -9.8378 -0.7963 19 6 5.5341 -10.1944 -1.4626 20 1 5.9554 -9.5325 -2.2047 21 6 6.1502 -11.4069 -1.1841 22 7 7.4161 -11.5885 -1.4953 23 14 5.1826 -12.7805 -0.3679 24 1 5.3048 -12.6630 1.1074 25 1 5.7210 -14.0933 -0.8062 26 1 3.7530 -12.6772 -0.7560 27 6 3.4506 -8.9606 -1.4553 28 6 3.8110 -7.4863 -1.1473 29 6 4.3085 -2.9346 -0.4227 30 6 4.7468 -1.5241 -0.0069 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3634 -0.8901 -0.5137 34 1 1.5489 -2.8403 -0.9934 35 1 1.0644 -2.7086 0.7171 36 1 4.6271 -5.4618 0.8359 37 1 5.3091 -8.1522 0.8858 38 1 4.3713 -7.4160 2.2078 39 1 3.7912 -9.6032 2.5508 40 1 2.5477 -9.1802 1.3514 41 1 3.4621 -11.1964 0.5079 42 1 5.1165 -10.7420 0.9557 43 1 7.8982 -10.9040 -1.9853 44 1 3.4916 -9.1270 -2.5317 45 1 2.4440 -9.1714 -1.0939 46 1 4.8743 -7.3294 -1.3284 47 1 3.2357 -6.8303 -1.8005 48 1 5.1298 -3.6325 -0.2605 49 1 4.0358 -2.9343 -1.4781 50 1 5.4792 -1.1425 -0.7181 51 1 5.1847 -1.5540 0.9909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052660715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:51 Heat of formation + Delta-G solvation = 73.830588 kcal Electronic energy + Delta-G solvation = -31342.574868 eV Core-core repulsion = 27279.222373 eV Total energy + Delta-G solvation = -4063.352494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.71182 -40.37216 -38.26375 -36.80358 -35.26471 -35.00153 -32.70804 -31.81625 -31.14847 -30.92985 -30.06427 -28.20700 -26.22013 -25.22793 -24.30672 -23.56748 -22.60257 -21.74670 -20.74967 -20.34809 -19.79211 -19.53653 -17.73171 -17.25896 -17.24510 -16.72604 -16.29550 -15.38662 -15.19080 -14.92851 -14.67266 -14.26186 -14.21462 -14.11729 -14.05910 -13.82909 -13.66818 -13.26374 -13.21911 -12.94610 -12.70943 -12.48688 -12.37658 -12.35087 -11.85967 -11.81010 -11.54458 -11.48197 -11.35631 -11.04050 -10.90834 -10.84124 -10.54159 -10.39526 -10.28155 -10.20807 -9.83933 -9.76575 -9.52827 -9.15388 -9.13377 -8.97820 -8.46874 -7.03165 -6.25310 -3.34865 1.23881 1.97929 2.24530 2.56469 3.10420 3.38534 3.52917 3.67903 3.81050 4.07777 4.23492 4.39748 4.41010 4.50267 4.53991 4.56259 4.78321 4.81825 4.87396 4.96799 5.03251 5.08218 5.09082 5.22838 5.32477 5.43468 5.47061 5.52081 5.52273 5.63785 5.68650 5.73004 5.79513 5.80455 5.94105 5.96701 6.11217 6.20421 6.22942 6.23173 6.37881 6.46770 6.52711 6.64831 6.69171 6.74817 6.80785 6.94089 7.52540 8.07155 8.19644 8.20964 8.47621 9.06380 9.65358 10.15841 11.13044 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.002181 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.130873 B =12836.086113 C =13277.207668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.099 5.099 4 N -0.262 5.262 5 C -0.021 4.021 6 C -0.015 4.015 7 C -0.024 4.024 8 C -0.102 4.102 9 H 0.103 0.897 10 C 0.518 3.482 11 O -0.543 6.543 12 N -0.724 5.724 13 C 0.161 3.839 14 H 0.075 0.925 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.122 3.878 18 N -0.601 5.601 19 C -0.349 4.349 20 H 0.065 0.935 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 1.069 2.931 24 H -0.295 1.295 25 H -0.302 1.302 26 H -0.287 1.287 27 C 0.162 3.838 28 C -0.152 4.152 29 C -0.112 4.112 30 C -0.031 4.031 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.397 0.603 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.262 0.738 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 19.754 6.750 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.064 4.064 8 C -0.124 4.124 9 H 0.121 0.879 10 C 0.303 3.697 11 O -0.420 6.420 12 N -0.374 5.374 13 C 0.058 3.942 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.003 4.003 18 N -0.324 5.324 19 C -0.478 4.478 20 H 0.082 0.918 21 C -0.217 4.217 22 N -0.562 5.562 23 Si 0.901 3.099 24 H -0.223 1.223 25 H -0.230 1.230 26 H -0.214 1.214 27 C 0.034 3.966 28 C -0.194 4.194 29 C -0.150 4.150 30 C -0.070 4.070 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.823 19.547 7.035 24.413 hybrid contribution -0.003 0.767 -0.423 0.876 sum -12.826 20.314 6.612 24.918 Atomic orbital electron populations 1.22304 0.72666 1.06121 1.05158 1.46826 1.09224 1.04583 1.46956 1.78586 0.96129 1.11281 1.21712 1.74800 1.09603 1.11962 1.16224 1.21706 0.95005 0.91367 1.08027 1.21842 0.91250 0.92281 1.09571 1.19908 0.97625 0.84527 1.04316 1.21335 0.96388 0.92058 1.02642 0.87855 1.20294 0.84254 0.87439 0.77668 1.90699 1.24756 1.81759 1.44822 1.46468 1.17610 1.07714 1.65612 1.20032 1.00394 0.77775 0.96024 0.90669 1.21254 1.01411 0.95555 0.97041 1.21814 0.99602 0.95981 0.99573 1.21784 0.99418 0.94020 0.85082 1.43949 1.21834 1.55522 1.11048 1.20219 1.02237 1.02086 1.23235 0.91762 1.26196 0.96968 0.97921 1.00641 1.70901 1.06932 1.39328 1.39003 0.83767 0.75025 0.75904 0.75182 1.22297 1.23006 1.21362 1.20611 0.91695 0.87738 0.96566 1.21805 1.02043 1.00531 0.94975 1.21673 0.96675 0.96229 1.00469 1.19957 0.92571 0.91151 1.03298 0.88919 0.87885 0.88089 0.88431 0.89517 0.76870 0.89762 0.92622 0.91912 0.92637 0.95930 0.91101 0.92746 0.92814 0.94702 0.91765 0.92751 0.89672 0.90480 0.89182 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.27 59.84 0.67 1.02 16 2 N -0.28 -2.66 3.73 -64.01 -0.24 -2.90 16 3 N -0.10 -1.23 13.19 60.35 0.80 -0.43 16 4 N -0.26 -3.46 12.40 33.17 0.41 -3.04 16 5 C -0.02 -0.22 7.11 -83.12 -0.59 -0.81 16 6 C -0.02 -0.15 6.76 -82.50 -0.56 -0.70 16 7 C -0.02 -0.20 4.68 -27.74 -0.13 -0.33 16 8 C -0.10 -0.83 2.50 -91.49 -0.23 -1.06 16 9 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 10 C 0.52 5.96 7.00 -10.98 -0.08 5.89 16 11 O -0.54 -8.22 15.32 5.56 0.09 -8.14 16 12 N -0.72 -8.25 4.70 -56.81 -0.27 -8.52 16 13 C 0.16 2.34 1.96 -70.99 -0.14 2.21 16 14 H 0.08 1.20 6.66 -51.93 -0.35 0.86 16 15 C -0.11 -1.70 4.99 -28.01 -0.14 -1.83 16 16 C -0.13 -2.08 5.71 -27.11 -0.15 -2.23 16 17 C 0.12 2.50 4.02 -2.76 -0.01 2.49 16 18 N -0.60 -13.56 2.03 -171.87 -0.35 -13.91 16 19 C -0.35 -9.34 9.72 -15.06 -0.15 -9.49 16 20 H 0.06 1.86 8.06 -52.49 -0.42 1.43 16 21 C -0.02 -0.45 5.15 -17.43 -0.09 -0.54 16 22 N -0.92 -27.90 13.70 55.49 0.76 -27.13 16 23 Si 1.07 25.89 24.39 -169.99 -4.15 21.74 16 24 H -0.29 -6.67 6.62 56.52 0.37 -6.29 16 25 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -6.68 6.62 56.52 0.37 -6.31 16 27 C 0.16 3.18 5.65 -4.08 -0.02 3.16 16 28 C -0.15 -2.57 5.19 -28.58 -0.15 -2.72 16 29 C -0.11 -0.84 5.17 -26.44 -0.14 -0.97 16 30 C -0.03 -0.24 6.30 -27.70 -0.17 -0.41 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.28 7.96 -51.93 -0.41 -0.13 16 34 H 0.10 0.89 7.78 -51.93 -0.40 0.48 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 3.57 7.93 -40.82 -0.32 3.24 16 37 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 38 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 41 H 0.02 0.47 5.95 -51.93 -0.31 0.17 16 42 H 0.07 1.59 5.28 -51.93 -0.27 1.32 16 43 H 0.26 7.88 8.73 -40.82 -0.36 7.52 16 44 H 0.05 1.10 7.99 -51.93 -0.41 0.68 16 45 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 48 H 0.08 0.55 7.30 -51.93 -0.38 0.17 16 49 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -34.68 388.74 -7.48 -42.16 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.31 Total: 0.65 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.07 Total: -6.35 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 1.11 Total: -55.93 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -4.15 Total: 21.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.68 -7.48 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052660715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.992 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds