Wall clock time and date at job start Wed Apr 1 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.29108 * 126.00785 * 2 1 4 4 N 1.29018 * 110.26186 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63523 * 0.02562 * 4 3 2 6 6 C 1.34395 * 126.00704 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25725 * 359.85041 * 6 2 1 8 8 C 1.53433 * 108.32457 * 196.44249 * 7 6 2 9 9 H 1.09006 * 109.45971 * 70.29502 * 8 7 6 10 10 C 1.50704 * 109.45537 * 190.25705 * 8 7 6 11 11 O 1.21278 * 120.00229 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99599 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99544 * 180.02562 * 12 10 8 14 14 H 1.08999 * 108.45118 * 327.31249 * 13 12 10 15 15 C 1.52568 * 108.38974 * 209.68907 * 13 12 10 16 16 C 1.50890 * 109.35932 * 153.82458 * 15 13 12 17 17 C 1.54295 * 110.23472 * 91.80048 * 16 15 13 18 18 N 1.47606 * 111.94066 * 319.70415 * 17 16 15 19 19 C 1.36930 * 118.64663 * 137.78049 * 18 17 16 20 20 H 1.08000 * 120.00355 * 207.78552 * 19 18 17 21 21 C 1.38820 * 119.99724 * 27.78538 * 19 18 17 22 22 N 1.31618 * 119.99784 * 200.38187 * 21 19 18 23 23 Si 1.86801 * 119.99895 * 20.38442 * 21 19 18 24 24 H 1.48501 * 109.46731 * 269.99831 * 23 21 19 25 25 H 1.48503 * 109.46752 * 150.00090 * 23 21 19 26 26 H 1.48497 * 109.47174 * 29.99855 * 23 21 19 27 27 C 1.44583 * 122.71138 * 317.49223 * 18 17 16 28 28 C 1.47093 * 108.51238 * 85.00363 * 13 12 10 29 29 C 1.53109 * 109.55928 * 310.28488 * 8 7 6 30 30 C 1.50598 * 129.16255 * 179.77954 * 5 4 3 31 31 H 1.09004 * 109.47648 * 270.00164 * 1 2 3 32 32 H 1.08996 * 109.47117 * 30.00775 * 1 2 3 33 33 H 1.09003 * 109.47247 * 150.00824 * 1 2 3 34 34 H 1.09000 * 109.69114 * 76.73604 * 7 6 2 35 35 H 1.08998 * 109.69469 * 316.15216 * 7 6 2 36 36 H 0.97000 * 120.00503 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.49386 * 273.79183 * 15 13 12 38 38 H 1.09002 * 109.48986 * 33.83877 * 15 13 12 39 39 H 1.08994 * 109.36312 * 212.08258 * 16 15 13 40 40 H 1.09000 * 109.36528 * 331.82343 * 16 15 13 41 41 H 1.08994 * 109.14059 * 199.01662 * 17 16 15 42 42 H 1.08993 * 108.96107 * 80.26739 * 17 16 15 43 43 H 0.97003 * 120.00092 * 354.89343 * 22 21 19 44 44 H 1.09002 * 109.45229 * 211.02906 * 27 18 17 45 45 H 1.09001 * 109.45194 * 330.95076 * 27 18 17 46 46 H 1.08999 * 109.32716 * 63.63518 * 28 13 12 47 47 H 1.08996 * 109.32838 * 304.15471 * 28 13 12 48 48 H 1.08998 * 109.45694 * 190.10060 * 29 8 7 49 49 H 1.09006 * 109.44617 * 310.03256 * 29 8 7 50 50 H 1.08994 * 109.69159 * 316.34184 * 30 5 4 51 51 H 1.09003 * 109.68339 * 76.87785 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2239 1.0444 0.0000 4 7 3.4657 0.6943 -0.0005 5 6 3.5327 -0.6331 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0042 8 6 3.1013 -3.3640 0.4155 9 1 3.3141 -3.1952 1.4712 10 6 2.8265 -4.8280 0.1867 11 8 1.7561 -5.1815 -0.2607 12 7 3.7708 -5.7445 0.4784 13 6 3.5039 -7.1676 0.2555 14 1 2.4433 -7.3508 0.4278 15 6 4.3061 -7.9730 1.2731 16 6 3.6186 -9.2932 1.5202 17 6 4.1705 -10.3698 0.5626 18 7 4.3922 -9.8378 -0.7963 19 6 5.5341 -10.1944 -1.4626 20 1 5.9554 -9.5325 -2.2047 21 6 6.1502 -11.4069 -1.1841 22 7 7.4161 -11.5885 -1.4953 23 14 5.1826 -12.7805 -0.3679 24 1 5.3048 -12.6630 1.1074 25 1 5.7210 -14.0933 -0.8062 26 1 3.7530 -12.6772 -0.7560 27 6 3.4506 -8.9606 -1.4553 28 6 3.8110 -7.4863 -1.1473 29 6 4.3085 -2.9346 -0.4227 30 6 4.7468 -1.5241 -0.0069 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3634 -0.8901 -0.5137 34 1 1.5489 -2.8403 -0.9934 35 1 1.0644 -2.7086 0.7171 36 1 4.6271 -5.4618 0.8359 37 1 5.3091 -8.1522 0.8858 38 1 4.3713 -7.4160 2.2078 39 1 3.7912 -9.6032 2.5508 40 1 2.5477 -9.1802 1.3514 41 1 3.4621 -11.1964 0.5079 42 1 5.1165 -10.7420 0.9557 43 1 7.8982 -10.9040 -1.9853 44 1 3.4916 -9.1270 -2.5317 45 1 2.4440 -9.1714 -1.0939 46 1 4.8743 -7.3294 -1.3284 47 1 3.2357 -6.8303 -1.8005 48 1 5.1298 -3.6325 -0.2605 49 1 4.0358 -2.9343 -1.4781 50 1 5.4792 -1.1425 -0.7181 51 1 5.1847 -1.5540 0.9909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052660715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:50 Heat of formation + Delta-G solvation = 49.635919 kcal Electronic energy + Delta-G solvation = -31343.624027 eV Core-core repulsion = 27279.222373 eV Total energy + Delta-G solvation = -4064.401654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.45614 -41.36715 -39.56527 -37.66031 -36.46491 -35.88118 -34.29436 -33.36644 -32.50192 -31.55245 -31.09547 -28.74831 -27.77451 -26.44515 -25.48374 -24.47880 -24.04933 -22.42369 -21.73979 -21.53954 -21.35295 -20.43036 -19.17969 -18.49594 -17.93642 -17.55530 -17.45978 -16.69310 -16.35148 -16.16738 -15.82685 -15.58083 -15.23057 -15.04832 -14.87867 -14.77249 -14.50929 -14.35945 -14.27447 -14.13493 -13.92820 -13.69880 -13.38226 -13.18951 -13.07267 -13.04587 -12.67053 -12.56560 -12.40920 -12.19700 -12.12528 -11.98812 -11.80594 -11.60191 -11.55502 -11.45459 -11.33197 -11.13091 -10.96974 -10.70178 -10.54916 -10.03601 -9.89398 -9.01162 -8.41763 -5.49384 0.51114 1.41793 1.44748 1.44813 1.59422 1.66548 1.76105 2.20285 2.56372 3.12955 3.15100 3.40625 3.44399 3.69924 3.72191 3.75622 3.76678 3.91942 4.07870 4.12137 4.23220 4.23979 4.27047 4.30891 4.39743 4.42380 4.47500 4.55546 4.56918 4.65010 4.73632 4.82538 4.83239 4.87053 4.89699 4.98921 5.01663 5.05533 5.10781 5.12780 5.17401 5.20090 5.29282 5.31796 5.41907 5.51596 5.59034 5.61734 5.86450 6.34205 6.63089 6.99244 7.30258 7.42451 7.70775 8.09445 8.91701 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.002181 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.130873 B =12836.086113 C =13277.207668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.129 5.129 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.013 4.013 7 C -0.018 4.018 8 C -0.092 4.092 9 H 0.128 0.872 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.716 5.716 13 C 0.167 3.833 14 H 0.072 0.928 15 C -0.108 4.108 16 C -0.123 4.123 17 C 0.114 3.886 18 N -0.610 5.610 19 C -0.327 4.327 20 H 0.029 0.971 21 C -0.071 4.071 22 N -0.960 5.960 23 Si 1.108 2.892 24 H -0.267 1.267 25 H -0.314 1.314 26 H -0.272 1.272 27 C 0.157 3.843 28 C -0.135 4.135 29 C -0.106 4.106 30 C -0.027 4.027 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.412 0.588 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.050 0.950 43 H 0.247 0.753 44 H 0.035 0.965 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 20.272 9.224 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.107 5.107 4 N -0.163 5.163 5 C -0.175 4.175 6 C -0.149 4.149 7 C -0.057 4.057 8 C -0.113 4.113 9 H 0.146 0.854 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.367 5.367 13 C 0.063 3.937 14 H 0.090 0.910 15 C -0.146 4.146 16 C -0.162 4.162 17 C -0.010 4.010 18 N -0.334 5.334 19 C -0.457 4.457 20 H 0.047 0.953 21 C -0.266 4.266 22 N -0.603 5.603 23 Si 0.935 3.065 24 H -0.193 1.193 25 H -0.243 1.243 26 H -0.197 1.197 27 C 0.030 3.970 28 C -0.176 4.176 29 C -0.145 4.145 30 C -0.066 4.066 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.248 0.752 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.993 20.140 9.535 26.858 hybrid contribution 0.580 0.687 -1.289 1.571 sum -14.413 20.827 8.246 26.637 Atomic orbital electron populations 1.22745 0.70113 1.07590 1.06925 1.47209 1.10685 1.03907 1.45184 1.78500 0.96396 1.12490 1.23296 1.74745 1.10360 1.13466 1.17762 1.22227 0.96530 0.90966 1.07750 1.22025 0.91013 0.92787 1.09048 1.19887 0.98062 0.83505 1.04272 1.21294 0.96507 0.89383 1.04159 0.85437 1.20768 0.83439 0.88500 0.76443 1.90691 1.26268 1.82483 1.46320 1.46274 1.18462 1.06412 1.65529 1.19726 1.00006 0.79686 0.94260 0.91026 1.21180 0.99336 0.95657 0.98397 1.21773 1.00188 0.94692 0.99573 1.21884 0.98732 0.95859 0.84564 1.44014 1.21082 1.55999 1.12285 1.20068 1.02897 1.00914 1.21834 0.95298 1.27331 0.97002 1.00297 1.01927 1.71015 1.08409 1.39283 1.41563 0.83262 0.74382 0.72641 0.76211 1.19308 1.24323 1.19722 1.20730 0.92035 0.88790 0.95491 1.21572 1.00486 0.98469 0.97059 1.21636 0.96837 0.96359 0.99629 1.20030 0.91669 0.90535 1.04348 0.86947 0.86877 0.86281 0.89252 0.88175 0.75158 0.92849 0.89146 0.89180 0.91128 0.95514 0.93221 0.94386 0.94670 0.92739 0.93916 0.92588 0.88268 0.91673 0.89101 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.27 127.77 1.44 1.88 16 2 N -0.28 -4.81 3.73 -356.42 -1.33 -6.14 16 3 N -0.13 -3.15 13.19 37.02 0.49 -2.66 16 4 N -0.30 -7.85 12.40 -48.98 -0.61 -8.46 16 5 C -0.03 -0.68 7.11 41.75 0.30 -0.38 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.25 4.68 29.94 0.14 -0.11 16 8 C -0.09 -1.21 2.50 -11.36 -0.03 -1.24 16 9 H 0.13 1.17 8.12 -2.38 -0.02 1.15 16 10 C 0.52 10.46 7.00 87.66 0.61 11.08 16 11 O -0.58 -16.07 15.32 -3.02 -0.05 -16.12 16 12 N -0.72 -14.09 4.70 -452.04 -2.12 -16.21 16 13 C 0.17 4.44 1.96 43.01 0.08 4.52 16 14 H 0.07 2.04 6.66 -2.39 -0.02 2.03 16 15 C -0.11 -2.84 4.99 29.76 0.15 -2.69 16 16 C -0.12 -3.46 5.71 30.35 0.17 -3.28 16 17 C 0.11 4.42 4.02 86.61 0.35 4.77 16 18 N -0.61 -27.21 2.03 -697.67 -1.42 -28.63 16 19 C -0.33 -17.94 9.72 84.04 0.82 -17.12 16 20 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 21 C -0.07 -4.08 5.15 84.86 0.44 -3.64 16 22 N -0.96 -60.06 13.70 21.65 0.30 -59.76 16 23 Si 1.11 52.06 24.39 68.60 1.67 53.73 16 24 H -0.27 -11.26 6.62 99.48 0.66 -10.60 16 25 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.27 -11.92 6.62 99.48 0.66 -11.26 16 27 C 0.16 6.03 5.65 87.38 0.49 6.52 16 28 C -0.13 -4.42 5.19 29.40 0.15 -4.26 16 29 C -0.11 -1.33 5.17 30.78 0.16 -1.17 16 30 C -0.03 -0.37 6.30 29.97 0.19 -0.18 16 31 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.37 7.96 -2.39 -0.02 0.35 16 34 H 0.09 1.45 7.78 -2.39 -0.02 1.43 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.41 5.92 7.93 -92.71 -0.74 5.18 16 37 H 0.05 1.78 7.49 -2.39 -0.02 1.76 16 38 H 0.09 1.80 8.04 -2.39 -0.02 1.78 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.81 7.32 -2.39 -0.02 1.80 16 41 H 0.03 1.03 5.95 -2.39 -0.01 1.02 16 42 H 0.05 2.14 5.28 -2.39 -0.01 2.13 16 43 H 0.25 15.61 8.73 -92.71 -0.81 14.80 16 44 H 0.03 1.45 7.99 -2.39 -0.02 1.43 16 45 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 1.81 7.95 -2.39 -0.02 1.79 16 48 H 0.10 0.98 7.30 -2.39 -0.02 0.96 16 49 H 0.06 0.99 8.12 -2.38 -0.02 0.98 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.65 388.74 2.75 -75.90 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.07 Total: 13.61 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.75 Total: -5.27 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.69 Total: -121.86 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.05 Total: -16.12 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.67 Total: 53.73 kcal Total: -78.65 2.75 -75.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052660715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.537 kcal (2) G-P(sol) polarization free energy of solvation -78.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds