Wall clock time and date at job start Wed Apr 1 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29106 * 126.00288 * 2 1 4 4 N 1.29023 * 110.25351 * 180.09713 * 3 2 1 5 5 C 1.32905 * 108.63990 * 0.03144 * 4 3 2 6 6 C 1.34390 * 126.00731 * 180.02562 * 2 1 3 7 7 C 1.50530 * 129.25498 * 359.69630 * 6 2 1 8 8 C 1.53444 * 108.32465 * 196.56437 * 7 6 2 9 9 H 1.09002 * 109.44333 * 70.29916 * 8 7 6 10 10 C 1.50697 * 109.45687 * 190.25763 * 8 7 6 11 11 O 1.21281 * 120.00122 * 0.08368 * 10 8 7 12 12 N 1.34781 * 120.00265 * 180.08278 * 10 8 7 13 13 C 1.46493 * 120.00478 * 179.97438 * 12 10 8 14 14 H 1.09000 * 110.32493 * 37.00824 * 13 12 10 15 15 C 1.50125 * 110.24891 * 159.01445 * 13 12 10 16 16 C 1.54841 * 110.81556 * 216.65370 * 15 13 12 17 17 C 1.54902 * 110.14266 * 321.14017 * 16 15 13 18 18 N 1.43440 * 116.07829 * 318.63108 * 17 16 15 19 19 C 1.36929 * 120.53839 * 271.55360 * 18 17 16 20 20 H 1.08000 * 120.00531 * 336.73831 * 19 18 17 21 21 C 1.38820 * 119.99881 * 156.74283 * 19 18 17 22 22 N 1.31618 * 119.99898 * 340.40652 * 21 19 18 23 23 Si 1.86798 * 120.00092 * 160.40901 * 21 19 18 24 24 H 1.48498 * 109.47156 * 89.99768 * 23 21 19 25 25 H 1.48496 * 109.47070 * 210.00101 * 23 21 19 26 26 H 1.48505 * 109.47050 * 330.00099 * 23 21 19 27 27 C 1.50170 * 118.92032 * 91.57167 * 18 17 16 28 28 C 1.46236 * 107.53427 * 289.59240 * 27 18 17 29 29 C 1.53107 * 109.54887 * 310.28078 * 8 7 6 30 30 C 1.50591 * 129.16679 * 179.89823 * 5 4 3 31 31 H 1.09001 * 109.47176 * 89.97466 * 1 2 3 32 32 H 1.09000 * 109.46603 * 209.97279 * 1 2 3 33 33 H 1.09004 * 109.46782 * 329.97571 * 1 2 3 34 34 H 1.09003 * 109.69516 * 76.85515 * 7 6 2 35 35 H 1.09000 * 109.69633 * 316.27311 * 7 6 2 36 36 H 0.97000 * 119.99314 * 359.97438 * 12 10 8 37 37 H 1.09001 * 109.20542 * 96.31716 * 15 13 12 38 38 H 1.08991 * 109.20866 * 337.00253 * 15 13 12 39 39 H 1.08991 * 109.36407 * 200.92638 * 16 15 13 40 40 H 1.09006 * 109.24220 * 81.27011 * 16 15 13 41 41 H 1.09001 * 108.16100 * 196.91943 * 17 16 15 42 42 H 1.09001 * 108.16043 * 80.35030 * 17 16 15 43 43 H 0.97001 * 120.00142 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.84780 * 170.08154 * 27 18 17 45 45 H 1.09010 * 109.84196 * 49.09700 * 27 18 17 46 46 H 1.09003 * 108.51859 * 179.64829 * 28 27 18 47 47 H 1.09001 * 108.52246 * 297.16404 * 28 27 18 48 48 H 1.08999 * 109.44755 * 190.10154 * 29 8 7 49 49 H 1.09004 * 109.45578 * 310.03338 * 29 8 7 50 50 H 1.08998 * 109.69623 * 76.75425 * 30 5 4 51 51 H 1.09000 * 109.72191 * 316.19744 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6942 -0.0021 5 6 3.5328 -0.6331 -0.0042 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5429 0.0050 8 6 3.1015 -3.3635 0.4172 9 1 3.3142 -3.1933 1.4727 10 6 2.8267 -4.8278 0.1903 11 8 1.7566 -5.1816 -0.2575 12 7 3.7701 -5.7441 0.4850 13 6 3.5028 -7.1676 0.2650 14 1 2.9115 -7.3062 -0.6401 15 6 4.7927 -7.9290 0.1646 16 6 4.6820 -9.0633 -0.8835 17 6 3.2848 -9.7274 -0.8052 18 7 2.7665 -9.9524 0.5132 19 6 3.0485 -11.1130 1.1829 20 1 3.3232 -12.0009 0.6328 21 6 2.9810 -11.1485 2.5690 22 7 3.0316 -10.0289 3.2592 23 14 2.8184 -12.7851 3.4546 24 1 4.1701 -13.3221 3.7545 25 1 2.0709 -12.5896 4.7227 26 1 2.0851 -13.7448 2.5906 27 6 1.9095 -8.8946 1.1469 28 6 2.7747 -7.7600 1.4672 29 6 4.3084 -2.9351 -0.4219 30 6 4.7468 -1.5241 -0.0091 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3632 -0.8903 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 1.5488 -2.8415 -0.9922 35 1 1.0646 -2.7076 0.7183 36 1 4.6261 -5.4610 0.8429 37 1 5.0306 -8.3610 1.1367 38 1 5.5902 -7.2464 -0.1285 39 1 5.4495 -9.8121 -0.6881 40 1 4.8288 -8.6470 -1.8802 41 1 3.3357 -10.6876 -1.3186 42 1 2.5782 -9.0969 -1.3450 43 1 2.9841 -10.0536 4.2277 44 1 1.4559 -9.2830 2.0587 45 1 1.1318 -8.5819 0.4500 46 1 2.1665 -6.9787 1.9232 47 1 3.5172 -8.0855 2.1958 48 1 5.1298 -3.6328 -0.2589 49 1 4.0356 -2.9361 -1.4772 50 1 5.1851 -1.5534 0.9885 51 1 5.4794 -1.1437 -0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052660716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:56 Heat of formation + Delta-G solvation = 81.513444 kcal Electronic energy + Delta-G solvation = -31581.341275 eV Core-core repulsion = 27518.321934 eV Total energy + Delta-G solvation = -4063.019341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.63025 -40.09416 -38.01246 -36.62429 -35.14809 -34.62138 -32.56403 -31.26788 -30.83607 -30.65161 -30.02941 -28.12487 -26.25185 -25.00693 -23.79034 -23.24168 -23.11276 -21.66089 -20.66452 -20.00979 -19.65615 -19.07581 -17.55030 -17.16774 -16.71306 -16.52612 -15.87503 -15.18820 -14.94378 -14.75083 -14.24365 -14.10525 -14.04225 -13.92591 -13.75314 -13.73705 -13.58439 -13.25571 -13.09730 -12.79054 -12.42163 -12.24451 -12.03188 -11.87895 -11.71707 -11.47090 -11.37711 -11.26563 -11.22562 -10.83162 -10.76713 -10.73772 -10.37493 -10.20518 -10.20123 -10.01374 -9.81740 -9.56360 -9.49080 -9.27278 -9.06186 -8.67473 -8.34326 -6.72409 -5.80306 -3.18708 1.32673 2.06488 2.31975 2.79071 3.31806 3.36359 3.44360 3.47215 3.91416 4.18882 4.33231 4.50239 4.51238 4.51546 4.60448 4.64344 4.88707 4.91842 5.06325 5.17768 5.18810 5.30109 5.33496 5.39695 5.57276 5.60135 5.62087 5.66374 5.70756 5.75958 5.77353 5.89244 6.01673 6.10407 6.24525 6.29153 6.31345 6.46371 6.51412 6.64022 6.84105 6.88192 6.90911 7.05526 7.10972 7.25489 7.57593 7.73030 7.78919 7.94789 8.28579 8.41755 8.44967 9.18247 9.86348 10.39736 11.26938 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.002290 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.925338 B =12222.226253 C =12627.370670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.101 5.101 4 N -0.263 5.263 5 C -0.022 4.022 6 C -0.013 4.013 7 C -0.025 4.025 8 C -0.103 4.103 9 H 0.104 0.896 10 C 0.517 3.483 11 O -0.540 6.540 12 N -0.716 5.716 13 C 0.146 3.854 14 H 0.083 0.917 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.246 4.246 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.169 3.831 28 C -0.131 4.131 29 C -0.111 4.111 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.394 0.606 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.009 0.991 46 H 0.028 0.972 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 17.256 -6.101 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.079 5.079 4 N -0.127 5.127 5 C -0.163 4.163 6 C -0.147 4.147 7 C -0.064 4.064 8 C -0.125 4.125 9 H 0.122 0.878 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.366 5.366 13 C 0.043 3.957 14 H 0.101 0.899 15 C -0.151 4.151 16 C -0.181 4.181 17 C 0.025 3.975 18 N -0.310 5.310 19 C -0.375 4.375 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.729 3.271 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.045 3.955 28 C -0.171 4.171 29 C -0.149 4.149 30 C -0.069 4.069 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.228 0.772 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.027 0.973 46 H 0.047 0.953 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.899 18.572 -6.234 19.611 hybrid contribution 0.207 -1.629 0.875 1.860 sum -0.692 16.943 -5.360 17.784 Atomic orbital electron populations 1.22310 0.72643 1.06065 1.05221 1.46824 1.09242 1.04594 1.46908 1.78577 0.96116 1.11308 1.21865 1.74781 1.09646 1.11979 1.16282 1.21686 0.95014 0.91343 1.08212 1.21876 0.91232 0.92342 1.09265 1.19923 0.97755 0.84389 1.04346 1.21343 0.96185 0.92340 1.02644 0.87834 1.20214 0.84402 0.87236 0.77930 1.90707 1.24310 1.81785 1.44917 1.46277 1.17404 1.07556 1.65334 1.20505 0.97740 0.77167 1.00285 0.89880 1.21693 0.94949 0.96548 1.01862 1.22828 1.01837 0.97251 0.96199 1.20432 0.91625 0.97041 0.88418 1.44258 1.53937 1.18150 1.14610 1.19197 1.41715 0.87808 0.88817 0.91571 1.24876 1.01623 0.96573 0.96593 1.69959 1.54079 1.24938 1.05647 0.86355 0.77665 0.83980 0.79106 1.21655 1.21707 1.20686 1.20091 0.90740 0.87374 0.97301 1.21318 1.01536 0.97176 0.97037 1.21654 0.96776 0.96111 1.00384 1.19945 0.92534 0.91216 1.03254 0.88872 0.88064 0.87949 0.88413 0.89437 0.77179 0.90104 0.94079 0.92646 0.93715 0.94901 0.95310 0.93843 0.89153 0.97317 0.95315 0.88040 0.89793 0.90601 0.89567 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.27 59.85 0.67 1.09 16 2 N -0.28 -2.88 3.73 -64.00 -0.24 -3.12 16 3 N -0.10 -1.31 13.19 60.35 0.80 -0.51 16 4 N -0.26 -3.60 12.40 33.16 0.41 -3.19 16 5 C -0.02 -0.25 7.11 -83.13 -0.59 -0.84 16 6 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 7 C -0.02 -0.23 4.71 -27.74 -0.13 -0.36 16 8 C -0.10 -0.98 2.50 -91.49 -0.23 -1.21 16 9 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 10 C 0.52 6.96 7.01 -10.98 -0.08 6.88 16 11 O -0.54 -9.40 15.54 5.56 0.09 -9.31 16 12 N -0.72 -9.64 4.83 -55.45 -0.27 -9.91 16 13 C 0.15 2.52 2.17 -69.61 -0.15 2.37 16 14 H 0.08 1.60 5.83 -51.93 -0.30 1.30 16 15 C -0.11 -1.91 5.30 -27.19 -0.14 -2.05 16 16 C -0.14 -2.45 6.41 -24.76 -0.16 -2.61 16 17 C 0.15 3.13 5.17 -4.66 -0.02 3.11 16 18 N -0.59 -14.00 2.60 -175.07 -0.46 -14.45 16 19 C -0.25 -6.42 9.63 -15.06 -0.14 -6.57 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -24.05 9.43 55.49 0.52 -23.52 16 23 Si 0.90 21.03 29.60 -169.99 -5.03 15.99 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C 0.17 3.92 5.24 -5.20 -0.03 3.90 16 28 C -0.13 -2.72 4.73 -30.19 -0.14 -2.86 16 29 C -0.11 -0.87 5.17 -26.46 -0.14 -1.01 16 30 C -0.03 -0.25 6.30 -27.72 -0.17 -0.42 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.38 7.71 -51.93 -0.40 -0.02 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.99 7.78 -51.93 -0.40 0.59 16 35 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 36 H 0.39 4.18 7.78 -40.82 -0.32 3.86 16 37 H 0.08 1.63 6.83 -51.93 -0.35 1.28 16 38 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 42 H 0.03 0.56 6.89 -51.93 -0.36 0.21 16 43 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 44 H 0.09 2.35 6.05 -51.93 -0.31 2.03 16 45 H 0.01 0.20 8.13 -51.92 -0.42 -0.22 16 46 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 47 H 0.10 2.38 5.30 -51.93 -0.27 2.10 16 48 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 49 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -32.32 389.47 -8.50 -40.82 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.09 Total: 2.69 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.10 Total: -1.35 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.77 Total: -54.71 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.32 -8.50 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052660716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.333 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds