Wall clock time and date at job start Wed Apr 1 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28719 * 126.03316 * 2 1 4 4 N 1.28514 * 110.63650 * 179.97438 * 3 2 1 5 5 C 1.33330 * 109.43835 * 359.72848 * 4 3 2 6 6 C 1.37003 * 106.36671 * 0.42847 * 5 4 3 7 7 C 1.47240 * 127.18492 * 179.84606 * 6 5 4 8 8 O 1.21615 * 120.00083 * 207.37719 * 7 6 5 9 9 N 1.34785 * 119.99970 * 27.37303 * 7 6 5 10 10 C 1.46921 * 120.62619 * 8.65150 * 9 7 6 11 11 C 1.53194 * 108.77525 * 126.41166 * 10 9 7 12 12 C 1.53042 * 109.31233 * 54.63254 * 11 10 9 13 13 C 1.53041 * 109.53543 * 298.63473 * 12 11 10 14 14 H 1.08996 * 109.52383 * 301.39651 * 13 12 11 15 15 C 1.53008 * 109.49535 * 181.31593 * 13 12 11 16 16 H 1.08997 * 109.52129 * 300.24644 * 15 13 12 17 17 C 1.53035 * 109.49341 * 180.16358 * 15 13 12 18 18 C 1.53043 * 109.52254 * 178.67625 * 17 15 13 19 19 C 1.53198 * 109.31377 * 61.37480 * 18 17 15 20 20 N 1.46931 * 108.76964 * 305.36451 * 19 18 17 21 21 C 1.36940 * 120.62490 * 233.62964 * 20 19 18 22 22 H 1.07998 * 119.99610 * 148.90901 * 21 20 19 23 23 C 1.38812 * 120.00480 * 328.89914 * 21 20 19 24 24 N 1.31617 * 119.99918 * 340.44324 * 23 21 20 25 25 Si 1.86797 * 120.00358 * 160.43401 * 23 21 20 26 26 H 1.48502 * 109.46952 * 90.00353 * 25 23 21 27 27 H 1.48494 * 109.47580 * 210.00525 * 25 23 21 28 28 H 1.48507 * 109.47091 * 330.00771 * 25 23 21 29 29 C 1.46921 * 118.74134 * 53.60712 * 20 19 18 30 30 C 1.46924 * 120.63114 * 188.67070 * 9 7 6 31 31 H 1.09002 * 109.46524 * 270.09913 * 1 2 3 32 32 H 1.08999 * 109.47034 * 30.09991 * 1 2 3 33 33 H 1.08999 * 109.47066 * 150.10435 * 1 2 3 34 34 H 1.07996 * 126.81019 * 180.27786 * 5 4 3 35 35 H 1.08999 * 109.58826 * 246.19391 * 10 9 7 36 36 H 1.09007 * 109.59341 * 6.62571 * 10 9 7 37 37 H 1.08999 * 109.49836 * 174.58377 * 11 10 9 38 38 H 1.09003 * 109.49857 * 294.68022 * 11 10 9 39 39 H 1.09001 * 109.45922 * 178.61345 * 12 11 10 40 40 H 1.09000 * 109.45929 * 58.65996 * 12 11 10 41 41 H 1.09000 * 109.46693 * 58.66690 * 17 15 13 42 42 H 1.08997 * 109.46220 * 298.68718 * 17 15 13 43 43 H 1.09000 * 109.49844 * 181.32263 * 18 17 15 44 44 H 1.08995 * 109.49948 * 301.41912 * 18 17 15 45 45 H 1.09000 * 109.58572 * 65.14567 * 19 18 17 46 46 H 1.08997 * 109.58709 * 185.57821 * 19 18 17 47 47 H 0.97002 * 120.00536 * 179.97438 * 24 23 21 48 48 H 1.09004 * 109.58216 * 66.18326 * 29 20 19 49 49 H 1.08998 * 109.58480 * 186.45588 * 29 20 19 50 50 H 1.08996 * 109.58174 * 113.80396 * 30 9 7 51 51 H 1.08996 * 109.70070 * 353.44648 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6303 0.0069 6 6 2.2712 -1.1080 0.0005 7 6 1.8463 -2.5178 0.0006 8 8 0.7780 -2.8309 -0.4891 9 7 2.6412 -3.4612 0.5435 10 6 3.8401 -3.0829 1.3038 11 6 3.7845 -3.7557 2.6790 12 6 3.6056 -5.2647 2.4973 13 6 2.2868 -5.5400 1.7712 14 1 1.4603 -5.1233 2.3468 15 6 2.0932 -7.0501 1.6192 16 1 2.9209 -7.4676 1.0460 17 6 0.7764 -7.3252 0.8895 18 6 0.5979 -8.8343 0.7079 19 6 0.5382 -9.5066 2.0831 20 7 1.7350 -9.1281 2.8468 21 6 2.5415 -10.0865 3.4003 22 1 3.6010 -9.9057 3.5055 23 6 1.9971 -11.2903 3.8263 24 7 0.7057 -11.3813 4.0632 25 14 3.0974 -12.7811 4.0631 26 1 3.6071 -12.8036 5.4577 27 1 2.3185 -14.0179 3.8008 28 1 4.2414 -12.7070 3.1191 29 6 2.0504 -7.7018 3.0048 30 6 2.3255 -4.8875 0.3858 31 1 -0.3632 0.0018 1.0277 32 1 -0.3633 0.8891 -0.5154 33 1 -0.3633 -0.8909 -0.5122 34 1 4.4633 -1.2148 0.0131 35 1 4.7309 -3.4147 0.7705 36 1 3.8678 -2.0002 1.4276 37 1 4.7125 -3.5615 3.2168 38 1 2.9442 -3.3554 3.2462 39 1 3.5905 -5.7488 3.4738 40 1 4.4336 -5.6603 1.9090 41 1 0.7944 -6.8415 -0.0871 42 1 -0.0531 -6.9294 1.4755 43 1 -0.3285 -9.0286 0.1674 44 1 1.4398 -9.2348 0.1433 45 1 -0.3540 -9.1745 2.6138 46 1 0.5108 -10.5893 1.9597 47 1 0.3251 -12.2226 4.3605 48 1 1.2814 -7.2226 3.6108 49 1 3.0194 -7.5937 3.4920 50 1 3.0927 -5.3664 -0.2225 51 1 1.3546 -4.9976 -0.0972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053023659.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:28 Heat of formation + Delta-G solvation = 83.951921 kcal Electronic energy + Delta-G solvation = -31651.755187 eV Core-core repulsion = 27588.841586 eV Total energy + Delta-G solvation = -4062.913600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.71357 -40.47424 -38.51423 -36.98493 -35.06287 -34.18778 -32.82539 -32.02224 -31.30211 -30.43406 -28.55791 -28.29638 -26.33059 -25.16127 -23.98234 -23.64910 -22.65065 -21.92291 -21.43430 -20.28179 -19.66441 -19.06661 -17.78953 -17.44726 -17.08729 -16.63776 -16.30312 -15.49796 -15.08499 -14.79787 -14.61585 -14.42993 -14.02902 -13.95165 -13.73414 -13.63368 -13.40799 -13.32670 -13.18011 -13.08434 -12.69666 -12.48201 -12.33170 -12.19629 -11.70963 -11.51009 -11.45197 -11.21453 -10.98223 -10.85366 -10.70524 -10.60569 -10.59872 -10.37517 -10.33131 -10.19291 -10.13281 -9.89632 -9.77031 -9.43864 -9.35586 -8.90761 -8.45905 -6.62832 -5.80522 -3.23803 0.58613 1.65867 1.92309 2.54144 2.65949 3.35545 3.43252 3.45570 3.78459 4.02447 4.33611 4.45867 4.49556 4.52151 4.61875 4.72476 4.77596 4.89104 4.98637 5.07163 5.11155 5.22020 5.33280 5.34959 5.46624 5.51153 5.54083 5.56606 5.64968 5.70044 5.77062 5.87835 5.91699 5.97046 6.03219 6.08281 6.22844 6.26390 6.38732 6.40718 6.45964 6.64955 6.70223 6.83339 6.88881 6.94519 7.01731 7.36377 7.61106 7.61486 7.79927 7.95728 8.45836 9.20530 9.84495 10.43811 11.27800 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002303 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.038362 B =12156.911547 C =12838.369585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.256 5.256 3 N -0.061 5.061 4 N -0.273 5.273 5 C -0.005 4.005 6 C -0.064 4.064 7 C 0.594 3.406 8 O -0.533 6.533 9 N -0.590 5.590 10 C 0.087 3.913 11 C -0.134 4.134 12 C -0.119 4.119 13 C -0.092 4.092 14 H 0.072 0.928 15 C -0.095 4.095 16 H 0.069 0.931 17 C -0.105 4.105 18 C -0.142 4.142 19 C 0.173 3.827 20 N -0.590 5.590 21 C -0.256 4.256 22 H 0.062 0.938 23 C 0.006 3.994 24 N -0.897 5.897 25 Si 0.897 3.103 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.155 3.845 30 C 0.117 3.883 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.203 0.797 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.075 0.925 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 20.403 -7.769 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.052 5.052 3 N -0.042 5.042 4 N -0.136 5.136 5 C -0.166 4.166 6 C -0.198 4.198 7 C 0.379 3.621 8 O -0.410 6.410 9 N -0.322 5.322 10 C -0.035 4.035 11 C -0.172 4.172 12 C -0.156 4.156 13 C -0.111 4.111 14 H 0.091 0.909 15 C -0.116 4.116 16 H 0.087 0.913 17 C -0.143 4.143 18 C -0.181 4.181 19 C 0.047 3.953 20 N -0.313 5.313 21 C -0.386 4.386 22 H 0.080 0.920 23 C -0.193 4.193 24 N -0.541 5.541 25 Si 0.727 3.273 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.029 3.971 30 C -0.004 4.004 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.220 0.780 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.500 21.615 -7.963 23.170 hybrid contribution 0.343 -1.974 0.217 2.016 sum 2.843 19.640 -7.746 21.303 Atomic orbital electron populations 1.22619 0.71370 1.07267 1.05734 1.47661 1.09904 1.03398 1.44279 1.78284 0.96711 1.11496 1.17738 1.74927 1.09177 1.12459 1.16987 1.24093 0.96831 0.91837 1.03789 1.21997 0.91704 0.90886 1.15259 1.16721 0.83906 0.82573 0.78906 1.90808 1.21589 1.81679 1.46928 1.47852 1.25935 1.06742 1.51655 1.22339 0.87174 1.01121 0.92872 1.21930 1.02763 0.96763 0.95718 1.21656 0.97454 0.94562 1.01953 1.21526 0.98135 0.96602 0.94875 0.90929 1.21664 0.97964 0.91710 1.00261 0.91286 1.21488 0.97106 0.97053 0.98626 1.22169 0.99914 0.95249 1.00802 1.20689 0.88407 0.99171 0.87032 1.43997 1.28278 0.99619 1.59358 1.19080 0.89625 0.95087 1.34820 0.91999 1.25084 0.95824 0.99822 0.98573 1.70073 1.11116 1.25160 1.47730 0.86390 0.80078 0.82862 0.77983 1.21373 1.21568 1.20441 1.20912 0.98179 0.86022 0.91988 1.21944 1.03043 0.77085 0.98296 0.88628 0.87612 0.86333 0.78044 0.90352 0.88915 0.90329 0.91549 0.90457 0.91531 0.93570 0.92831 0.93433 0.92787 0.96443 0.90660 0.93666 0.96803 0.92785 0.90838 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.20 59.85 0.67 1.13 16 2 N -0.26 -2.55 3.79 -64.12 -0.24 -2.79 16 3 N -0.06 -0.70 13.14 60.35 0.79 0.09 16 4 N -0.27 -3.14 12.35 30.47 0.38 -2.76 16 5 C -0.01 -0.05 9.66 -17.35 -0.17 -0.22 16 6 C -0.06 -0.65 6.41 -82.34 -0.53 -1.18 16 7 C 0.59 6.68 7.54 -12.60 -0.09 6.58 16 8 O -0.53 -7.36 14.63 5.26 0.08 -7.29 16 9 N -0.59 -5.83 2.97 -174.11 -0.52 -6.35 16 10 C 0.09 0.64 5.18 -3.71 -0.02 0.62 16 11 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 12 C -0.12 -1.24 4.86 -26.69 -0.13 -1.37 16 13 C -0.09 -1.11 1.92 -90.50 -0.17 -1.29 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.10 -1.48 1.92 -90.50 -0.17 -1.65 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.11 -1.69 4.86 -26.69 -0.13 -1.82 16 18 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 19 C 0.17 4.05 5.31 -3.70 -0.02 4.03 16 20 N -0.59 -14.37 2.97 -172.32 -0.51 -14.89 16 21 C -0.26 -6.89 9.53 -15.06 -0.14 -7.04 16 22 H 0.06 1.63 7.90 -52.49 -0.41 1.22 16 23 C 0.01 0.18 4.82 -17.43 -0.08 0.09 16 24 N -0.90 -25.93 11.60 55.49 0.64 -25.29 16 25 Si 0.90 21.35 29.60 -169.99 -5.03 16.32 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.16 3.06 5.28 -3.72 -0.02 3.04 16 30 C 0.12 1.30 5.20 -3.71 -0.02 1.28 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.12 0.88 6.36 -51.93 -0.33 0.55 16 34 H 0.20 1.18 6.46 -52.49 -0.34 0.84 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.60 4.34 -51.92 -0.23 0.38 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.91 6.50 -51.93 -0.34 0.57 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.65 6.49 -51.93 -0.34 0.32 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.98 6.38 -51.93 -0.33 1.65 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.05 1.04 6.53 -51.93 -0.34 0.70 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.25 5.59 -51.93 -0.29 0.96 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -32.63 387.07 -7.94 -40.56 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.00 Total: -1.60 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.36 Total: -1.83 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.54 Total: -51.99 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.29 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.63 -7.94 -40.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053023659.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.514 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds