Wall clock time and date at job start Wed Apr 1 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28709 * 126.03550 * 2 1 4 4 N 1.28511 * 110.63577 * 179.97438 * 3 2 1 5 5 C 1.33318 * 109.44068 * 359.76301 * 4 3 2 6 6 C 1.37007 * 106.37166 * 0.37245 * 5 4 3 7 7 C 1.47233 * 127.18760 * 179.90150 * 6 5 4 8 8 O 1.21622 * 119.99659 * 153.06274 * 7 6 5 9 9 N 1.34771 * 120.00358 * 333.06705 * 7 6 5 10 10 C 1.46928 * 120.62841 * 352.31533 * 9 7 6 11 11 C 1.53195 * 108.77713 * 233.63337 * 10 9 7 12 12 C 1.53041 * 109.31091 * 305.36569 * 11 10 9 13 13 C 1.53041 * 109.53692 * 61.36537 * 12 11 10 14 14 C 1.46928 * 120.63606 * 172.34273 * 9 7 6 15 15 H 1.08997 * 109.70302 * 246.23032 * 14 9 7 16 16 C 1.53001 * 109.58001 * 6.57735 * 14 9 7 17 17 H 1.09002 * 109.50183 * 312.08134 * 16 14 9 18 18 C 1.53050 * 109.49389 * 191.98523 * 16 14 9 19 19 C 1.53041 * 109.53370 * 178.68746 * 18 16 14 20 20 C 1.53188 * 109.31721 * 61.36624 * 19 18 16 21 21 N 1.46928 * 108.77588 * 305.36366 * 20 19 18 22 22 C 1.36933 * 120.63276 * 233.63510 * 21 20 19 23 23 H 1.07995 * 120.00660 * 142.51289 * 22 21 20 24 24 C 1.38821 * 119.99723 * 322.51017 * 22 21 20 25 25 N 1.31625 * 119.99846 * 351.68046 * 24 22 21 26 26 Si 1.86796 * 120.00202 * 171.67952 * 24 22 21 27 27 H 1.48501 * 109.46858 * 59.99901 * 26 24 22 28 28 H 1.48496 * 109.46973 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47087 * 300.00249 * 26 24 22 30 30 C 1.46930 * 118.73649 * 53.60328 * 21 20 19 31 31 H 1.08991 * 109.47404 * 273.15960 * 1 2 3 32 32 H 1.08997 * 109.46591 * 33.16481 * 1 2 3 33 33 H 1.09000 * 109.46935 * 153.15591 * 1 2 3 34 34 H 1.08006 * 126.81464 * 180.25475 * 5 4 3 35 35 H 1.09002 * 109.58283 * 113.84610 * 10 9 7 36 36 H 1.08994 * 109.58943 * 353.42187 * 10 9 7 37 37 H 1.08998 * 109.49831 * 185.41686 * 11 10 9 38 38 H 1.08992 * 109.52547 * 65.33303 * 11 10 9 39 39 H 1.09002 * 109.46340 * 301.34347 * 12 11 10 40 40 H 1.09005 * 109.46089 * 181.38692 * 12 11 10 41 41 H 1.09001 * 109.49509 * 178.68095 * 13 12 11 42 42 H 1.09002 * 109.49849 * 58.58643 * 13 12 11 43 43 H 1.08996 * 109.45824 * 58.67023 * 18 16 14 44 44 H 1.09000 * 109.45938 * 298.70097 * 18 16 14 45 45 H 1.09008 * 109.49813 * 301.40958 * 19 18 16 46 46 H 1.09004 * 109.49268 * 181.31733 * 19 18 16 47 47 H 1.09000 * 109.58595 * 65.14650 * 20 19 18 48 48 H 1.09000 * 109.58839 * 185.43169 * 20 19 18 49 49 H 0.96990 * 119.99698 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58186 * 66.18767 * 30 21 20 51 51 H 1.09000 * 109.58055 * 186.60502 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 0.0005 5 6 3.5552 -0.6303 0.0061 6 6 2.2711 -1.1082 0.0006 7 6 1.8462 -2.5179 0.0014 8 8 0.7692 -2.8280 0.4737 9 7 2.6507 -3.4646 -0.5210 10 6 3.8744 -3.0916 -1.2437 11 6 3.8551 -3.7580 -2.6229 12 6 3.6602 -5.2664 -2.4535 13 6 2.3185 -5.5354 -1.7682 14 6 2.3205 -4.8892 -0.3793 15 1 3.0641 -5.3780 0.2502 16 6 0.9360 -5.0340 0.2557 17 1 0.8678 -4.3878 1.1309 18 6 0.7166 -6.4892 0.6761 19 6 -0.6548 -6.6285 1.3410 20 6 -1.7462 -6.2455 0.3366 21 7 -1.4609 -4.9007 -0.1819 22 6 -2.4102 -3.9154 -0.1260 23 1 -2.1198 -2.8971 0.0859 24 6 -3.7460 -4.2257 -0.3418 25 7 -4.0833 -5.4273 -0.7598 26 14 -5.0647 -2.9378 -0.0388 27 1 -4.8223 -1.7651 -0.9171 28 1 -6.3990 -3.5150 -0.3415 29 1 -5.0209 -2.5093 1.3824 30 6 -0.1373 -4.6330 -0.7610 31 1 -0.3634 0.0566 1.0260 32 1 -0.3632 0.8603 -0.5622 33 1 -0.3633 -0.9169 -0.4641 34 1 4.4633 -1.2150 0.0118 35 1 4.7465 -3.4321 -0.6855 36 1 3.9134 -2.0087 -1.3616 37 1 4.8000 -3.5681 -3.1320 38 1 3.0352 -3.3494 -3.2135 39 1 4.4675 -5.6706 -1.8426 40 1 3.6708 -5.7462 -3.4322 41 1 2.1698 -6.6107 -1.6690 42 1 1.5127 -5.1099 -2.3664 43 1 1.4936 -6.7846 1.3810 44 1 0.7607 -7.1317 -0.2033 45 1 -0.7084 -5.9676 2.2062 46 1 -0.8007 -7.6602 1.6611 47 1 -1.7528 -6.9605 -0.4861 48 1 -2.7169 -6.2499 0.8324 49 1 -5.0166 -5.6439 -0.9109 50 1 -0.0129 -5.2164 -1.6732 51 1 -0.0463 -3.5709 -0.9888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053083061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:39 Heat of formation + Delta-G solvation = 125.322368 kcal Electronic energy + Delta-G solvation = -33733.451318 eV Core-core repulsion = 29672.331675 eV Total energy + Delta-G solvation = -4061.119643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.37173 -40.77273 -37.52265 -37.05036 -34.68077 -33.74330 -33.03456 -31.89914 -30.79923 -30.23445 -28.50024 -28.00332 -25.59385 -25.15542 -24.06028 -23.40005 -22.54864 -22.01334 -20.88224 -20.79276 -19.30870 -18.69694 -17.22904 -16.99300 -16.73519 -16.50655 -15.85532 -15.23695 -14.91432 -14.81177 -14.40728 -14.17630 -14.10751 -13.78131 -13.62691 -13.36761 -13.28285 -13.16306 -12.95804 -12.70549 -12.37759 -12.29814 -12.14330 -11.94521 -11.65224 -11.20992 -11.18137 -11.12803 -10.89758 -10.80670 -10.68837 -10.53338 -10.45189 -10.25183 -10.18053 -9.96356 -9.83003 -9.44945 -9.37443 -9.14731 -8.87316 -8.39585 -8.29830 -6.33629 -5.67968 -3.18490 0.98773 2.04458 2.24630 2.90804 3.06001 3.38814 3.45188 3.45425 4.13498 4.37435 4.54872 4.60546 4.72160 4.75170 4.81294 4.89571 5.04640 5.12650 5.20196 5.22042 5.38016 5.44381 5.48190 5.50628 5.62005 5.63607 5.70965 5.76935 5.80048 5.83917 5.86902 5.93171 5.97928 6.05696 6.20640 6.32366 6.34720 6.39929 6.47526 6.58663 6.68672 6.80874 6.84598 7.01444 7.12311 7.29145 7.37916 7.52791 7.76582 7.91499 8.16893 8.31396 8.65624 9.36687 9.98731 10.62107 11.40139 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.005093 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.822472 B = 5496.545009 C = 7616.120682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.252 5.252 3 N -0.069 5.069 4 N -0.278 5.278 5 C -0.019 4.019 6 C -0.055 4.055 7 C 0.568 3.432 8 O -0.469 6.469 9 N -0.591 5.591 10 C 0.090 3.910 11 C -0.134 4.134 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.160 3.840 15 H 0.069 0.931 16 C -0.114 4.114 17 H 0.112 0.888 18 C -0.106 4.106 19 C -0.140 4.140 20 C 0.175 3.825 21 N -0.583 5.583 22 C -0.238 4.238 23 H 0.058 0.942 24 C 0.005 3.995 25 N -0.906 5.906 26 Si 0.897 3.103 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.284 1.284 30 C 0.169 3.831 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.199 0.801 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.073 0.927 49 H 0.252 0.748 50 H 0.004 0.996 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.516 2.389 -1.302 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.048 5.048 3 N -0.050 5.050 4 N -0.141 5.141 5 C -0.179 4.179 6 C -0.191 4.191 7 C 0.353 3.647 8 O -0.342 6.342 9 N -0.326 5.326 10 C -0.033 4.033 11 C -0.172 4.172 12 C -0.157 4.157 13 C -0.177 4.177 14 C 0.058 3.942 15 H 0.087 0.913 16 C -0.134 4.134 17 H 0.129 0.871 18 C -0.145 4.145 19 C -0.179 4.179 20 C 0.049 3.951 21 N -0.305 5.305 22 C -0.369 4.369 23 H 0.075 0.925 24 C -0.194 4.194 25 N -0.550 5.550 26 Si 0.727 3.273 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.211 1.211 30 C 0.043 3.957 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.216 0.784 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.022 0.978 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.701 3.717 -1.089 17.144 hybrid contribution -0.802 -0.636 0.105 1.029 sum 15.899 3.081 -0.984 16.225 Atomic orbital electron populations 1.22589 0.70789 1.06901 1.06099 1.47689 1.10054 1.03360 1.43685 1.78243 0.96595 1.11710 1.18414 1.74858 1.09448 1.12553 1.17221 1.24002 0.96809 0.91864 1.05274 1.22289 0.91437 0.91452 1.13905 1.16855 0.84601 0.82326 0.80916 1.91080 1.19716 1.79613 1.43762 1.47666 1.24065 1.06244 1.54579 1.22250 0.86839 1.01385 0.92853 1.21905 1.02481 0.96371 0.96470 1.21543 0.97856 0.95479 1.00837 1.22168 0.97765 1.01355 0.96453 1.21464 0.98520 0.77857 0.96378 0.91304 1.22522 0.91811 0.96458 1.02614 0.87096 1.21537 0.97237 0.96519 0.99162 1.22151 0.96612 0.98981 1.00167 1.20652 0.95466 0.86106 0.92846 1.43794 1.09948 1.08623 1.68121 1.19015 0.86757 0.89901 1.41200 0.92463 1.25298 0.98317 0.96572 0.99194 1.69961 1.16340 1.19730 1.48963 0.86473 0.81443 0.81314 0.78063 1.21045 1.21753 1.21079 1.21201 0.85077 0.98082 0.91309 0.88168 0.88048 0.86466 0.78413 0.90964 0.88706 0.90805 0.91349 0.92052 0.91801 0.90573 0.90013 0.94250 0.93168 0.92972 0.93815 0.96768 0.90834 0.93821 0.97808 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.88 59.85 0.65 1.59 16 2 N -0.25 -3.50 3.79 -64.12 -0.24 -3.74 16 3 N -0.07 -1.01 13.14 60.35 0.79 -0.22 16 4 N -0.28 -3.94 12.35 30.47 0.38 -3.56 16 5 C -0.02 -0.23 9.66 -17.35 -0.17 -0.39 16 6 C -0.06 -0.74 6.45 -82.33 -0.53 -1.27 16 7 C 0.57 8.21 6.76 -12.61 -0.09 8.13 16 8 O -0.47 -8.43 8.85 5.26 0.05 -8.38 16 9 N -0.59 -7.12 2.96 -166.55 -0.49 -7.61 16 10 C 0.09 0.77 5.20 -3.71 -0.02 0.75 16 11 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 12 C -0.12 -1.07 5.88 -26.69 -0.16 -1.23 16 13 C -0.14 -1.67 4.60 -26.61 -0.12 -1.79 16 14 C 0.16 2.08 2.64 -67.60 -0.18 1.90 16 15 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 16 C -0.11 -1.95 1.57 -90.50 -0.14 -2.10 16 17 H 0.11 2.18 5.51 -54.14 -0.30 1.88 16 18 C -0.11 -1.78 4.99 -26.68 -0.13 -1.92 16 19 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 20 C 0.18 4.25 5.21 -3.71 -0.02 4.23 16 21 N -0.58 -14.62 2.95 -172.32 -0.51 -15.13 16 22 C -0.24 -6.52 9.51 -15.06 -0.14 -6.66 16 23 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 24 C 0.00 0.13 5.07 -17.42 -0.09 0.04 16 25 N -0.91 -26.50 11.40 55.49 0.63 -25.87 16 26 Si 0.90 21.69 29.56 -169.99 -5.03 16.67 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.17 3.53 4.34 -3.71 -0.02 3.51 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.12 1.65 7.03 -51.93 -0.37 1.28 16 34 H 0.20 1.59 6.36 -52.48 -0.33 1.26 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.79 4.21 -51.93 -0.22 0.57 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.91 7.15 -51.93 -0.37 0.54 16 42 H 0.08 1.18 5.86 -51.93 -0.30 0.88 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.83 7.06 -51.93 -0.37 0.46 16 45 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 2.00 6.53 -51.93 -0.34 1.66 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.00 0.09 5.88 -51.93 -0.31 -0.21 16 51 H 0.06 1.34 5.23 -51.93 -0.27 1.07 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -32.36 375.88 -8.02 -40.38 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.79 Total: 1.20 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.48 Total: 0.60 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.56 Total: -56.13 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.05 Total: -8.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.36 -8.02 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053083061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.704 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds