Wall clock time and date at job start Wed Apr 1 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28709 * 126.03550 * 2 1 4 4 N 1.28511 * 110.63577 * 179.97438 * 3 2 1 5 5 C 1.33318 * 109.44068 * 359.76301 * 4 3 2 6 6 C 1.37007 * 106.37166 * 0.37245 * 5 4 3 7 7 C 1.47233 * 127.18760 * 179.90150 * 6 5 4 8 8 O 1.21622 * 119.99659 * 153.06274 * 7 6 5 9 9 N 1.34771 * 120.00358 * 333.06705 * 7 6 5 10 10 C 1.46928 * 120.62841 * 352.31533 * 9 7 6 11 11 C 1.53195 * 108.77713 * 233.63337 * 10 9 7 12 12 C 1.53041 * 109.31091 * 305.36569 * 11 10 9 13 13 C 1.53041 * 109.53692 * 61.36537 * 12 11 10 14 14 C 1.46928 * 120.63606 * 172.34273 * 9 7 6 15 15 H 1.08997 * 109.70302 * 246.23032 * 14 9 7 16 16 C 1.53001 * 109.58001 * 6.57735 * 14 9 7 17 17 H 1.09002 * 109.50183 * 312.08134 * 16 14 9 18 18 C 1.53050 * 109.49389 * 191.98523 * 16 14 9 19 19 C 1.53041 * 109.53370 * 178.68746 * 18 16 14 20 20 C 1.53188 * 109.31721 * 61.36624 * 19 18 16 21 21 N 1.46928 * 108.77588 * 305.36366 * 20 19 18 22 22 C 1.36933 * 120.63276 * 233.63510 * 21 20 19 23 23 H 1.07995 * 120.00660 * 142.51289 * 22 21 20 24 24 C 1.38821 * 119.99723 * 322.51017 * 22 21 20 25 25 N 1.31625 * 119.99846 * 351.68046 * 24 22 21 26 26 Si 1.86796 * 120.00202 * 171.67952 * 24 22 21 27 27 H 1.48501 * 109.46858 * 59.99901 * 26 24 22 28 28 H 1.48496 * 109.46973 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47087 * 300.00249 * 26 24 22 30 30 C 1.46930 * 118.73649 * 53.60328 * 21 20 19 31 31 H 1.08991 * 109.47404 * 273.15960 * 1 2 3 32 32 H 1.08997 * 109.46591 * 33.16481 * 1 2 3 33 33 H 1.09000 * 109.46935 * 153.15591 * 1 2 3 34 34 H 1.08006 * 126.81464 * 180.25475 * 5 4 3 35 35 H 1.09002 * 109.58283 * 113.84610 * 10 9 7 36 36 H 1.08994 * 109.58943 * 353.42187 * 10 9 7 37 37 H 1.08998 * 109.49831 * 185.41686 * 11 10 9 38 38 H 1.08992 * 109.52547 * 65.33303 * 11 10 9 39 39 H 1.09002 * 109.46340 * 301.34347 * 12 11 10 40 40 H 1.09005 * 109.46089 * 181.38692 * 12 11 10 41 41 H 1.09001 * 109.49509 * 178.68095 * 13 12 11 42 42 H 1.09002 * 109.49849 * 58.58643 * 13 12 11 43 43 H 1.08996 * 109.45824 * 58.67023 * 18 16 14 44 44 H 1.09000 * 109.45938 * 298.70097 * 18 16 14 45 45 H 1.09008 * 109.49813 * 301.40958 * 19 18 16 46 46 H 1.09004 * 109.49268 * 181.31733 * 19 18 16 47 47 H 1.09000 * 109.58595 * 65.14650 * 20 19 18 48 48 H 1.09000 * 109.58839 * 185.43169 * 20 19 18 49 49 H 0.96990 * 119.99698 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58186 * 66.18767 * 30 21 20 51 51 H 1.09000 * 109.58055 * 186.60502 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 0.0005 5 6 3.5552 -0.6303 0.0061 6 6 2.2711 -1.1082 0.0006 7 6 1.8462 -2.5179 0.0014 8 8 0.7692 -2.8280 0.4737 9 7 2.6507 -3.4646 -0.5210 10 6 3.8744 -3.0916 -1.2437 11 6 3.8551 -3.7580 -2.6229 12 6 3.6602 -5.2664 -2.4535 13 6 2.3185 -5.5354 -1.7682 14 6 2.3205 -4.8892 -0.3793 15 1 3.0641 -5.3780 0.2502 16 6 0.9360 -5.0340 0.2557 17 1 0.8678 -4.3878 1.1309 18 6 0.7166 -6.4892 0.6761 19 6 -0.6548 -6.6285 1.3410 20 6 -1.7462 -6.2455 0.3366 21 7 -1.4609 -4.9007 -0.1819 22 6 -2.4102 -3.9154 -0.1260 23 1 -2.1198 -2.8971 0.0859 24 6 -3.7460 -4.2257 -0.3418 25 7 -4.0833 -5.4273 -0.7598 26 14 -5.0647 -2.9378 -0.0388 27 1 -4.8223 -1.7651 -0.9171 28 1 -6.3990 -3.5150 -0.3415 29 1 -5.0209 -2.5093 1.3824 30 6 -0.1373 -4.6330 -0.7610 31 1 -0.3634 0.0566 1.0260 32 1 -0.3632 0.8603 -0.5622 33 1 -0.3633 -0.9169 -0.4641 34 1 4.4633 -1.2150 0.0118 35 1 4.7465 -3.4321 -0.6855 36 1 3.9134 -2.0087 -1.3616 37 1 4.8000 -3.5681 -3.1320 38 1 3.0352 -3.3494 -3.2135 39 1 4.4675 -5.6706 -1.8426 40 1 3.6708 -5.7462 -3.4322 41 1 2.1698 -6.6107 -1.6690 42 1 1.5127 -5.1099 -2.3664 43 1 1.4936 -6.7846 1.3810 44 1 0.7607 -7.1317 -0.2033 45 1 -0.7084 -5.9676 2.2062 46 1 -0.8007 -7.6602 1.6611 47 1 -1.7528 -6.9605 -0.4861 48 1 -2.7169 -6.2499 0.8324 49 1 -5.0166 -5.6439 -0.9109 50 1 -0.0129 -5.2164 -1.6732 51 1 -0.0463 -3.5709 -0.9888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053083061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:38 Heat of formation + Delta-G solvation = 104.323272 kcal Electronic energy + Delta-G solvation = -33734.361907 eV Core-core repulsion = 29672.331675 eV Total energy + Delta-G solvation = -4062.030232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.40519 -41.88478 -38.82661 -38.32215 -35.70359 -35.33472 -34.14779 -33.24387 -32.15902 -31.86770 -29.72036 -29.04968 -27.15897 -26.65099 -25.00346 -24.48666 -23.78746 -23.66107 -22.16229 -21.80204 -20.57517 -19.99839 -18.59779 -18.18192 -17.94534 -17.76753 -16.95257 -16.79435 -16.31866 -15.83051 -15.74628 -15.55669 -15.17762 -15.08715 -14.89380 -14.63730 -14.34340 -14.22735 -14.15700 -13.90657 -13.88444 -13.83407 -13.35303 -13.08187 -12.98163 -12.79164 -12.71085 -12.31812 -12.24380 -12.15644 -12.06527 -11.91611 -11.69161 -11.64753 -11.53024 -11.35537 -11.23078 -11.04444 -10.86124 -10.50423 -10.35080 -10.06739 -9.40104 -8.38489 -7.79475 -5.33993 -0.05193 1.03795 1.23576 1.42209 1.45075 1.51261 1.89619 2.03776 2.51899 3.18511 3.33904 3.40317 3.71295 3.74354 3.89288 3.93784 3.99815 4.05108 4.14680 4.16514 4.23428 4.31056 4.35101 4.42334 4.48783 4.58331 4.62783 4.66062 4.72637 4.84902 4.88178 4.92465 4.97682 5.03514 5.04499 5.09847 5.14894 5.21339 5.29006 5.29358 5.32123 5.46408 5.50544 5.52579 5.55982 5.60263 5.71236 5.76305 5.99796 6.35236 6.53411 7.09220 7.25451 7.27160 7.98564 8.54429 9.25014 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.005093 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.822472 B = 5496.545009 C = 7616.120682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.256 5.256 3 N -0.086 5.086 4 N -0.296 5.296 5 C 0.003 3.997 6 C -0.070 4.070 7 C 0.567 3.433 8 O -0.515 6.515 9 N -0.585 5.585 10 C 0.084 3.916 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.137 4.137 14 C 0.166 3.834 15 H 0.101 0.899 16 C -0.102 4.102 17 H 0.091 0.909 18 C -0.102 4.102 19 C -0.130 4.130 20 C 0.182 3.818 21 N -0.602 5.602 22 C -0.243 4.243 23 H 0.054 0.946 24 C -0.050 4.050 25 N -0.939 5.939 26 Si 0.959 3.041 27 H -0.272 1.272 28 H -0.295 1.295 29 H -0.280 1.280 30 C 0.177 3.823 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.065 0.935 47 H -0.009 1.009 48 H 0.035 0.965 49 H 0.247 0.753 50 H -0.007 1.007 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.283 2.449 -1.109 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.053 5.053 3 N -0.066 5.066 4 N -0.158 5.158 5 C -0.157 4.157 6 C -0.205 4.205 7 C 0.353 3.647 8 O -0.391 6.391 9 N -0.318 5.318 10 C -0.037 4.037 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.175 4.175 14 C 0.063 3.937 15 H 0.119 0.881 16 C -0.122 4.122 17 H 0.109 0.891 18 C -0.140 4.140 19 C -0.169 4.169 20 C 0.056 3.944 21 N -0.325 5.325 22 C -0.374 4.374 23 H 0.072 0.928 24 C -0.245 4.245 25 N -0.585 5.585 26 Si 0.788 3.212 27 H -0.198 1.198 28 H -0.221 1.221 29 H -0.206 1.206 30 C 0.053 3.947 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.009 0.991 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.010 0.990 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.537 3.796 -0.915 20.905 hybrid contribution -1.928 -0.663 0.000 2.038 sum 18.610 3.133 -0.915 18.894 Atomic orbital electron populations 1.22581 0.70525 1.06652 1.06452 1.47826 1.10420 1.03562 1.43460 1.78227 0.97068 1.12082 1.19262 1.74848 1.09212 1.13800 1.17915 1.24604 0.97346 0.91060 1.02737 1.22350 0.92153 0.90955 1.15054 1.17054 0.84258 0.82997 0.80419 1.91070 1.21658 1.80314 1.46093 1.47774 1.24727 1.05470 1.53846 1.22580 0.86187 1.01850 0.93054 1.21914 1.03133 0.95744 0.96211 1.21517 0.96307 0.96033 1.01170 1.22107 0.98810 1.01001 0.95589 1.21388 0.96448 0.78778 0.97060 0.88149 1.22211 0.93097 0.96087 1.00803 0.89150 1.21517 0.96163 0.96392 0.99919 1.21987 0.96795 0.99764 0.98371 1.20449 0.95535 0.85572 0.92828 1.44076 1.11188 1.08334 1.68863 1.19279 0.87639 0.90376 1.40126 0.92820 1.26009 1.00324 0.98471 0.99657 1.70133 1.16164 1.21539 1.50642 0.85470 0.78411 0.79226 0.78126 1.19797 1.22150 1.20600 1.21232 0.84383 0.97219 0.91898 0.87856 0.85830 0.88762 0.74499 0.87189 0.88369 0.87775 0.93767 0.89534 0.91299 0.90419 0.93485 0.90613 0.92679 0.94111 0.91675 0.99084 0.94682 0.94449 0.98970 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.88 127.77 1.39 3.36 16 2 N -0.26 -7.05 3.79 -356.77 -1.35 -8.40 16 3 N -0.09 -2.46 13.14 37.02 0.49 -1.98 16 4 N -0.30 -7.84 12.35 -57.50 -0.71 -8.55 16 5 C 0.00 0.06 9.66 84.18 0.81 0.87 16 6 C -0.07 -1.79 6.45 40.41 0.26 -1.53 16 7 C 0.57 16.00 6.76 86.61 0.59 16.59 16 8 O -0.51 -19.00 8.85 -4.10 -0.04 -19.04 16 9 N -0.59 -12.70 2.96 -799.10 -2.36 -15.06 16 10 C 0.08 1.08 5.20 86.36 0.45 1.53 16 11 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 12 C -0.11 -1.58 5.88 30.62 0.18 -1.40 16 13 C -0.14 -3.00 4.60 30.67 0.14 -2.86 16 14 C 0.17 3.87 2.64 44.97 0.12 3.99 16 15 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 16 C -0.10 -3.44 1.57 -10.71 -0.02 -3.45 16 17 H 0.09 3.55 5.51 -37.38 -0.21 3.34 16 18 C -0.10 -3.25 4.99 30.62 0.15 -3.09 16 19 C -0.13 -5.11 6.08 30.67 0.19 -4.92 16 20 C 0.18 9.25 5.21 86.36 0.45 9.70 16 21 N -0.60 -31.64 2.95 -699.10 -2.06 -33.71 16 22 C -0.24 -13.92 9.51 84.04 0.80 -13.13 16 23 H 0.05 3.06 7.84 -2.91 -0.02 3.04 16 24 C -0.05 -2.87 5.07 84.86 0.43 -2.44 16 25 N -0.94 -57.60 11.40 21.66 0.25 -57.35 16 26 Si 0.96 46.17 29.56 68.60 2.03 48.19 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 29 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 30 C 0.18 7.68 4.34 86.36 0.38 8.05 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 2.84 7.03 -2.39 -0.02 2.83 16 34 H 0.24 2.68 6.36 -2.91 -0.02 2.66 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 1.23 4.21 -2.39 -0.01 1.22 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 1.68 7.15 -2.39 -0.02 1.66 16 42 H 0.05 1.36 5.86 -2.39 -0.01 1.35 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.72 7.06 -2.39 -0.02 1.70 16 45 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.03 2.01 6.53 -2.39 -0.02 2.00 16 49 H 0.25 14.71 8.31 -92.72 -0.77 13.94 16 50 H -0.01 -0.33 5.88 -2.39 -0.01 -0.34 16 51 H 0.05 2.24 5.23 -2.39 -0.01 2.23 16 Total: -1.00 -75.78 375.88 3.49 -72.28 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.75 Total: 13.86 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.50 Total: 9.74 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -5.76 Total: -125.05 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.78 3.49 -72.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053083061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.608 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds