Wall clock time and date at job start Wed Apr 1 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34582 * 125.74474 * 2 1 4 4 N 1.30874 * 107.62338 * 179.86765 * 3 2 1 5 5 C 1.34546 * 107.26880 * 0.39071 * 4 3 2 6 6 C 1.47872 * 126.05052 * 179.72779 * 5 4 3 7 7 O 1.21553 * 120.00145 * 187.01665 * 6 5 4 8 8 N 1.34771 * 119.99773 * 7.02295 * 6 5 4 9 9 C 1.46931 * 120.63079 * 5.56331 * 8 6 5 10 10 C 1.53188 * 108.77631 * 126.37193 * 9 8 6 11 11 C 1.53041 * 109.31518 * 54.63519 * 10 9 8 12 12 C 1.53044 * 109.53512 * 298.63546 * 11 10 9 13 13 C 1.46930 * 120.63322 * 185.28521 * 8 6 5 14 14 H 1.08989 * 109.58949 * 113.83812 * 13 8 6 15 15 C 1.52999 * 109.58267 * 353.41494 * 13 8 6 16 16 H 1.09007 * 109.49753 * 50.02235 * 15 13 8 17 17 C 1.53038 * 109.49856 * 170.08756 * 15 13 8 18 18 C 1.53034 * 109.54045 * 181.31572 * 17 15 13 19 19 C 1.53189 * 109.31401 * 298.63566 * 18 17 15 20 20 N 1.46923 * 108.77612 * 54.63799 * 19 18 17 21 21 C 1.36936 * 120.63425 * 126.41341 * 20 19 18 22 22 H 1.07996 * 119.99882 * 213.97441 * 21 20 19 23 23 C 1.38809 * 119.99749 * 33.98059 * 21 20 19 24 24 N 1.31618 * 120.00725 * 23.26973 * 23 21 20 25 25 Si 1.86802 * 119.99674 * 203.27037 * 23 21 20 26 26 H 1.48500 * 109.47059 * 89.99857 * 25 23 21 27 27 H 1.48497 * 109.47405 * 209.99781 * 25 23 21 28 28 H 1.48498 * 109.47129 * 330.00106 * 25 23 21 29 29 C 1.46930 * 118.73446 * 306.38875 * 20 19 18 30 30 N 1.28846 * 125.74988 * 180.30943 * 2 1 3 31 31 H 1.09005 * 109.46707 * 269.70993 * 1 2 3 32 32 H 1.08990 * 109.47149 * 29.71469 * 1 2 3 33 33 H 1.09001 * 109.46674 * 149.71840 * 1 2 3 34 34 H 1.08002 * 126.18888 * 0.02608 * 3 2 1 35 35 H 1.08999 * 109.58253 * 246.15727 * 9 8 6 36 36 H 1.08995 * 109.58767 * 6.43634 * 9 8 6 37 37 H 1.08998 * 109.49811 * 174.58392 * 10 9 8 38 38 H 1.09003 * 109.49995 * 294.65137 * 10 9 8 39 39 H 1.08998 * 109.46485 * 58.65394 * 11 10 9 40 40 H 1.08999 * 109.46356 * 178.61833 * 11 10 9 41 41 H 1.08996 * 109.49642 * 181.31530 * 12 11 10 42 42 H 1.09003 * 109.49732 * 301.37644 * 12 11 10 43 43 H 1.09001 * 109.45985 * 301.33792 * 17 15 13 44 44 H 1.08997 * 109.46127 * 61.30999 * 17 15 13 45 45 H 1.09008 * 109.49877 * 58.58531 * 18 17 15 46 46 H 1.09003 * 109.50244 * 178.64730 * 18 17 15 47 47 H 1.09007 * 109.58736 * 174.42181 * 19 18 17 48 48 H 1.08993 * 109.58717 * 294.70119 * 19 18 17 49 49 H 0.96994 * 120.00476 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58507 * 293.82130 * 29 20 19 51 51 H 1.08998 * 109.58434 * 173.40046 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6852 0.0029 5 6 3.4751 -0.6601 -0.0041 6 6 4.6575 -1.5479 -0.0096 7 8 4.5161 -2.7477 -0.1443 8 7 5.8920 -1.0269 0.1349 9 6 6.0724 0.4031 0.4200 10 6 6.9462 0.5504 1.6696 11 6 8.2531 -0.2198 1.4670 12 6 7.9456 -1.7053 1.2649 13 6 7.0830 -1.8792 0.0163 14 1 7.6556 -1.5867 -0.8637 15 6 6.6556 -3.3429 -0.1097 16 1 5.8957 -3.4345 -0.8859 17 6 7.8689 -4.1994 -0.4790 18 6 7.4362 -5.6587 -0.6374 19 6 6.8723 -6.1672 0.6931 20 7 5.7988 -5.2634 1.1281 21 6 4.5572 -5.7521 1.4362 22 1 3.6772 -5.1632 1.2241 23 6 4.4299 -7.0044 2.0213 24 7 5.4376 -7.5241 2.6898 25 14 2.8283 -7.9522 1.8600 26 1 2.8756 -8.8004 0.6419 27 1 2.6397 -8.8128 3.0553 28 1 1.6963 -6.9969 1.7542 29 6 6.0828 -3.8252 1.2268 30 7 2.2178 -1.0457 -0.0056 31 1 -0.3633 -0.0052 1.0277 32 1 -0.3633 0.8924 -0.5093 33 1 -0.3633 -0.8875 -0.5182 34 1 1.9163 2.1191 0.0004 35 1 6.5610 0.8857 -0.4265 36 1 5.1012 0.8664 0.5940 37 1 7.1674 1.6045 1.8367 38 1 6.4166 0.1484 2.5334 39 1 8.7701 0.1667 0.5887 40 1 8.8872 -0.0964 2.3449 41 1 8.8780 -2.2567 1.1440 42 1 7.4074 -2.0868 2.1327 43 1 8.2932 -3.8425 -1.4174 44 1 8.6182 -4.1266 0.3092 45 1 6.6687 -5.7290 -1.4083 46 1 8.2961 -6.2642 -0.9238 47 1 6.4722 -7.1725 0.5601 48 1 7.6637 -6.1853 1.4423 49 1 5.3487 -8.3993 3.0983 50 1 6.8093 -3.6499 2.0203 51 1 5.1618 -3.2851 1.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053084330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:42 Heat of formation + Delta-G solvation = 128.589998 kcal Electronic energy + Delta-G solvation = -33226.412850 eV Core-core repulsion = 29165.434902 eV Total energy + Delta-G solvation = -4060.977948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.50936 -40.50710 -37.22252 -36.81160 -34.81655 -33.23691 -32.58894 -31.81178 -31.42934 -30.08864 -28.25662 -28.00358 -25.29730 -24.96236 -23.75009 -23.32548 -22.38542 -21.83166 -20.78929 -20.66606 -19.18185 -18.51242 -17.30125 -16.89114 -16.47811 -16.16204 -15.87149 -15.08104 -14.91579 -14.62380 -14.35355 -14.17485 -13.89025 -13.66054 -13.48935 -13.44335 -13.32652 -13.10660 -12.90585 -12.56671 -12.30988 -12.12605 -11.99678 -11.78262 -11.42712 -11.11432 -10.90466 -10.89040 -10.66667 -10.57014 -10.53062 -10.32723 -10.24589 -10.05488 -9.86248 -9.74257 -9.68059 -9.40112 -9.21367 -9.01306 -8.61649 -8.17207 -8.01569 -6.26230 -5.52819 -2.92908 1.46807 2.05715 2.10548 3.10949 3.54276 3.60185 3.60822 3.64234 4.00943 4.19665 4.54948 4.71321 4.74119 4.85390 4.98965 5.04051 5.05988 5.12577 5.32192 5.45024 5.55539 5.58919 5.69125 5.77731 5.85814 5.89870 5.93205 6.00315 6.05804 6.08012 6.12721 6.15235 6.25573 6.29050 6.38096 6.53126 6.54033 6.61301 6.66590 6.77673 6.89174 6.96980 7.01215 7.15272 7.36784 7.47524 7.59232 7.67404 7.79381 7.97881 8.16814 8.59787 8.80459 9.51482 10.16734 10.78722 11.54501 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.004867 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.002536 B = 5751.755514 C = 8187.509356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.307 5.307 3 C 0.182 3.818 4 N -0.487 5.487 5 C 0.155 3.845 6 C 0.586 3.414 7 O -0.456 6.456 8 N -0.589 5.589 9 C 0.079 3.921 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.139 4.139 13 C 0.160 3.840 14 H 0.065 0.935 15 C -0.112 4.112 16 H 0.110 0.890 17 C -0.106 4.106 18 C -0.138 4.138 19 C 0.175 3.825 20 N -0.581 5.581 21 C -0.234 4.234 22 H 0.063 0.937 23 C 0.002 3.998 24 N -0.900 5.900 25 Si 0.889 3.111 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.279 1.279 29 C 0.166 3.834 30 N -0.248 5.248 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.223 0.777 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.015 0.985 49 H 0.249 0.751 50 H 0.004 0.996 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 23.257 -6.125 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.102 5.102 3 C -0.113 4.113 4 N -0.213 5.213 5 C -0.125 4.125 6 C 0.369 3.631 7 O -0.326 6.326 8 N -0.324 5.324 9 C -0.044 4.044 10 C -0.171 4.171 11 C -0.157 4.157 12 C -0.177 4.177 13 C 0.057 3.943 14 H 0.083 0.917 15 C -0.132 4.132 16 H 0.127 0.873 17 C -0.144 4.144 18 C -0.178 4.178 19 C 0.048 3.952 20 N -0.303 5.303 21 C -0.364 4.364 22 H 0.081 0.919 23 C -0.196 4.196 24 N -0.544 5.544 25 Si 0.720 3.280 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.205 1.205 29 C 0.040 3.960 30 N -0.086 5.086 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.239 0.761 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.033 0.967 49 H 0.058 0.942 50 H 0.021 0.979 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.922 21.932 -6.098 22.951 hybrid contribution -0.956 -0.155 0.001 0.968 sum -3.877 21.777 -6.097 22.944 Atomic orbital electron populations 1.22234 0.72418 1.05833 1.05022 1.47379 1.09301 1.03887 1.49622 1.26581 0.86409 0.95933 1.02341 1.71009 1.19152 1.09838 1.21336 1.24186 0.92566 0.89063 1.06685 1.16512 0.80809 0.85796 0.79958 1.91073 1.84117 1.12196 1.45180 1.47654 1.04448 1.09768 1.70488 1.22616 1.04482 0.80851 0.96437 1.21910 0.96543 1.00027 0.98667 1.21545 0.97016 0.95810 1.01320 1.22078 1.00234 0.95824 0.99554 1.21300 0.84402 0.91575 0.97011 0.91678 1.22466 0.97380 0.89489 1.03896 0.87293 1.21537 0.97328 0.96452 0.99118 1.22117 0.99138 0.95108 1.01410 1.20603 0.90199 0.94455 0.89905 1.43866 1.09558 1.00626 1.76248 1.19160 0.84343 1.00754 1.32160 0.91946 1.25055 0.96666 1.00663 0.97246 1.70138 1.31913 1.17491 1.34868 0.86473 0.84502 0.80147 0.76906 1.21697 1.22183 1.20471 1.21286 0.97249 0.86385 0.91088 1.74485 1.02883 1.12781 1.18464 0.89137 0.88184 0.88103 0.76064 0.92341 0.84555 0.91345 0.91771 0.92302 0.92164 0.90777 0.90114 0.94207 0.93137 0.92817 0.93796 0.91732 0.96682 0.94158 0.97890 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.38 59.85 0.68 1.11 16 2 N -0.31 -3.19 3.72 -69.39 -0.26 -3.45 16 3 C 0.18 1.59 12.62 -90.48 -1.14 0.45 16 4 N -0.49 -6.11 7.82 -12.36 -0.10 -6.21 16 5 C 0.15 2.53 7.66 -156.35 -1.20 1.34 16 6 C 0.59 10.89 6.88 -12.32 -0.08 10.80 16 7 O -0.46 -10.31 10.34 5.32 0.06 -10.26 16 8 N -0.59 -9.28 2.96 -166.57 -0.49 -9.78 16 9 C 0.08 0.98 6.14 -3.71 -0.02 0.96 16 10 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 11 C -0.12 -1.37 5.89 -26.69 -0.16 -1.53 16 12 C -0.14 -2.02 4.63 -26.83 -0.12 -2.14 16 13 C 0.16 2.55 2.62 -67.82 -0.18 2.37 16 14 H 0.07 0.95 8.12 -51.94 -0.42 0.53 16 15 C -0.11 -2.24 1.57 -90.50 -0.14 -2.38 16 16 H 0.11 2.47 5.61 -53.61 -0.30 2.17 16 17 C -0.11 -1.99 4.97 -26.69 -0.13 -2.12 16 18 C -0.14 -2.94 6.08 -26.62 -0.16 -3.11 16 19 C 0.17 4.55 5.36 -3.71 -0.02 4.53 16 20 N -0.58 -16.17 2.95 -172.32 -0.51 -16.68 16 21 C -0.23 -7.15 9.46 -15.06 -0.14 -7.29 16 22 H 0.06 1.98 7.93 -52.49 -0.42 1.56 16 23 C 0.00 0.06 4.69 -17.43 -0.08 -0.02 16 24 N -0.90 -28.23 12.09 55.49 0.67 -27.56 16 25 Si 0.89 23.60 29.61 -169.99 -5.03 18.57 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 28 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 29 C 0.17 3.97 4.38 -3.71 -0.02 3.95 16 30 N -0.25 -3.99 12.09 32.07 0.39 -3.60 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.22 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 1.72 4.02 -65.30 -0.26 1.45 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 42 H 0.08 1.38 5.84 -51.93 -0.30 1.07 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.92 6.96 -51.93 -0.36 0.56 16 45 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.85 6.72 -51.92 -0.35 1.50 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.00 0.09 5.88 -51.93 -0.31 -0.22 16 51 H 0.07 1.74 5.05 -51.86 -0.26 1.48 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -38.33 380.54 -10.60 -48.94 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.98 Total: -0.98 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.08 Total: 5.26 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.30 Total: -67.27 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.03 Total: 18.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.33 -10.60 -48.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053084330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.528 kcal (2) G-P(sol) polarization free energy of solvation -38.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds