Wall clock time and date at job start Wed Apr 1 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34582 * 125.74474 * 2 1 4 4 N 1.30874 * 107.62338 * 179.86765 * 3 2 1 5 5 C 1.34546 * 107.26880 * 0.39071 * 4 3 2 6 6 C 1.47872 * 126.05052 * 179.72779 * 5 4 3 7 7 O 1.21553 * 120.00145 * 187.01665 * 6 5 4 8 8 N 1.34771 * 119.99773 * 7.02295 * 6 5 4 9 9 C 1.46931 * 120.63079 * 5.56331 * 8 6 5 10 10 C 1.53188 * 108.77631 * 126.37193 * 9 8 6 11 11 C 1.53041 * 109.31518 * 54.63519 * 10 9 8 12 12 C 1.53044 * 109.53512 * 298.63546 * 11 10 9 13 13 C 1.46930 * 120.63322 * 185.28521 * 8 6 5 14 14 H 1.08989 * 109.58949 * 113.83812 * 13 8 6 15 15 C 1.52999 * 109.58267 * 353.41494 * 13 8 6 16 16 H 1.09007 * 109.49753 * 50.02235 * 15 13 8 17 17 C 1.53038 * 109.49856 * 170.08756 * 15 13 8 18 18 C 1.53034 * 109.54045 * 181.31572 * 17 15 13 19 19 C 1.53189 * 109.31401 * 298.63566 * 18 17 15 20 20 N 1.46923 * 108.77612 * 54.63799 * 19 18 17 21 21 C 1.36936 * 120.63425 * 126.41341 * 20 19 18 22 22 H 1.07996 * 119.99882 * 213.97441 * 21 20 19 23 23 C 1.38809 * 119.99749 * 33.98059 * 21 20 19 24 24 N 1.31618 * 120.00725 * 23.26973 * 23 21 20 25 25 Si 1.86802 * 119.99674 * 203.27037 * 23 21 20 26 26 H 1.48500 * 109.47059 * 89.99857 * 25 23 21 27 27 H 1.48497 * 109.47405 * 209.99781 * 25 23 21 28 28 H 1.48498 * 109.47129 * 330.00106 * 25 23 21 29 29 C 1.46930 * 118.73446 * 306.38875 * 20 19 18 30 30 N 1.28846 * 125.74988 * 180.30943 * 2 1 3 31 31 H 1.09005 * 109.46707 * 269.70993 * 1 2 3 32 32 H 1.08990 * 109.47149 * 29.71469 * 1 2 3 33 33 H 1.09001 * 109.46674 * 149.71840 * 1 2 3 34 34 H 1.08002 * 126.18888 * 0.02608 * 3 2 1 35 35 H 1.08999 * 109.58253 * 246.15727 * 9 8 6 36 36 H 1.08995 * 109.58767 * 6.43634 * 9 8 6 37 37 H 1.08998 * 109.49811 * 174.58392 * 10 9 8 38 38 H 1.09003 * 109.49995 * 294.65137 * 10 9 8 39 39 H 1.08998 * 109.46485 * 58.65394 * 11 10 9 40 40 H 1.08999 * 109.46356 * 178.61833 * 11 10 9 41 41 H 1.08996 * 109.49642 * 181.31530 * 12 11 10 42 42 H 1.09003 * 109.49732 * 301.37644 * 12 11 10 43 43 H 1.09001 * 109.45985 * 301.33792 * 17 15 13 44 44 H 1.08997 * 109.46127 * 61.30999 * 17 15 13 45 45 H 1.09008 * 109.49877 * 58.58531 * 18 17 15 46 46 H 1.09003 * 109.50244 * 178.64730 * 18 17 15 47 47 H 1.09007 * 109.58736 * 174.42181 * 19 18 17 48 48 H 1.08993 * 109.58717 * 294.70119 * 19 18 17 49 49 H 0.96994 * 120.00476 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58507 * 293.82130 * 29 20 19 51 51 H 1.08998 * 109.58434 * 173.40046 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6852 0.0029 5 6 3.4751 -0.6601 -0.0041 6 6 4.6575 -1.5479 -0.0096 7 8 4.5161 -2.7477 -0.1443 8 7 5.8920 -1.0269 0.1349 9 6 6.0724 0.4031 0.4200 10 6 6.9462 0.5504 1.6696 11 6 8.2531 -0.2198 1.4670 12 6 7.9456 -1.7053 1.2649 13 6 7.0830 -1.8792 0.0163 14 1 7.6556 -1.5867 -0.8637 15 6 6.6556 -3.3429 -0.1097 16 1 5.8957 -3.4345 -0.8859 17 6 7.8689 -4.1994 -0.4790 18 6 7.4362 -5.6587 -0.6374 19 6 6.8723 -6.1672 0.6931 20 7 5.7988 -5.2634 1.1281 21 6 4.5572 -5.7521 1.4362 22 1 3.6772 -5.1632 1.2241 23 6 4.4299 -7.0044 2.0213 24 7 5.4376 -7.5241 2.6898 25 14 2.8283 -7.9522 1.8600 26 1 2.8756 -8.8004 0.6419 27 1 2.6397 -8.8128 3.0553 28 1 1.6963 -6.9969 1.7542 29 6 6.0828 -3.8252 1.2268 30 7 2.2178 -1.0457 -0.0056 31 1 -0.3633 -0.0052 1.0277 32 1 -0.3633 0.8924 -0.5093 33 1 -0.3633 -0.8875 -0.5182 34 1 1.9163 2.1191 0.0004 35 1 6.5610 0.8857 -0.4265 36 1 5.1012 0.8664 0.5940 37 1 7.1674 1.6045 1.8367 38 1 6.4166 0.1484 2.5334 39 1 8.7701 0.1667 0.5887 40 1 8.8872 -0.0964 2.3449 41 1 8.8780 -2.2567 1.1440 42 1 7.4074 -2.0868 2.1327 43 1 8.2932 -3.8425 -1.4174 44 1 8.6182 -4.1266 0.3092 45 1 6.6687 -5.7290 -1.4083 46 1 8.2961 -6.2642 -0.9238 47 1 6.4722 -7.1725 0.5601 48 1 7.6637 -6.1853 1.4423 49 1 5.3487 -8.3993 3.0983 50 1 6.8093 -3.6499 2.0203 51 1 5.1618 -3.2851 1.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053084330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:41 Heat of formation + Delta-G solvation = 103.681802 kcal Electronic energy + Delta-G solvation = -33227.492950 eV Core-core repulsion = 29165.434902 eV Total energy + Delta-G solvation = -4062.058049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.41758 -41.86031 -38.81119 -38.24177 -35.78937 -35.05935 -33.69914 -33.11434 -32.72771 -32.17870 -29.67761 -28.81316 -27.18651 -26.44397 -24.86635 -24.53979 -23.76712 -23.38129 -22.21296 -21.79741 -20.59084 -19.96708 -18.62430 -18.25442 -17.74237 -17.31723 -17.07019 -16.80711 -16.31709 -15.89153 -15.78300 -15.67647 -15.34599 -15.08287 -14.83755 -14.71092 -14.30895 -14.13764 -14.07334 -13.99982 -13.88807 -13.77263 -13.34331 -13.00703 -12.95648 -12.78473 -12.70366 -12.30474 -12.13534 -12.08833 -12.02871 -11.86916 -11.67070 -11.54873 -11.41816 -11.39850 -11.09520 -10.93093 -10.64287 -10.50504 -10.39694 -10.04123 -9.35029 -8.52008 -7.85181 -5.30576 0.43011 1.18135 1.37135 1.37778 1.39761 1.50192 2.03887 2.36742 2.50522 3.09167 3.21983 3.47740 3.69551 3.88675 3.96880 3.97940 4.07830 4.17429 4.24099 4.29823 4.34173 4.36300 4.41522 4.44499 4.60579 4.65940 4.68338 4.77078 4.80403 4.84336 4.96152 5.01677 5.02643 5.05824 5.10011 5.16024 5.18114 5.27953 5.28738 5.42569 5.44123 5.46333 5.50453 5.54739 5.58859 5.68392 5.71270 5.88736 6.05253 6.43065 6.48078 7.00134 7.19255 7.31357 7.94459 8.49356 9.18037 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.004867 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.002536 B = 5751.755514 C = 8187.509356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.305 5.305 3 C 0.205 3.795 4 N -0.498 5.498 5 C 0.128 3.872 6 C 0.576 3.424 7 O -0.516 6.516 8 N -0.585 5.585 9 C 0.075 3.925 10 C -0.129 4.129 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.162 3.838 14 H 0.094 0.906 15 C -0.099 4.099 16 H 0.081 0.919 17 C -0.101 4.101 18 C -0.129 4.129 19 C 0.181 3.819 20 N -0.601 5.601 21 C -0.248 4.248 22 H 0.038 0.962 23 C -0.045 4.045 24 N -0.929 5.929 25 Si 0.955 3.045 26 H -0.283 1.283 27 H -0.286 1.286 28 H -0.277 1.277 29 C 0.175 3.825 30 N -0.299 5.299 31 H 0.102 0.898 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.285 0.715 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.029 0.971 48 H -0.002 1.002 49 H 0.250 0.750 50 H -0.005 1.005 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 26.963 -7.301 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.099 5.099 3 C -0.088 4.088 4 N -0.225 5.225 5 C -0.151 4.151 6 C 0.361 3.639 7 O -0.390 6.390 8 N -0.318 5.318 9 C -0.046 4.046 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.173 4.173 13 C 0.059 3.941 14 H 0.112 0.888 15 C -0.118 4.118 16 H 0.099 0.901 17 C -0.139 4.139 18 C -0.168 4.168 19 C 0.055 3.945 20 N -0.323 5.323 21 C -0.379 4.379 22 H 0.056 0.944 23 C -0.240 4.240 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.210 1.210 27 H -0.212 1.212 28 H -0.202 1.202 29 C 0.051 3.949 30 N -0.140 5.140 31 H 0.121 0.879 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.301 0.699 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.016 0.984 49 H 0.058 0.942 50 H 0.012 0.988 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.593 25.705 -7.277 26.841 hybrid contribution -1.189 -1.176 0.400 1.719 sum -3.782 24.529 -6.877 25.754 Atomic orbital electron populations 1.22715 0.69519 1.07711 1.06405 1.47750 1.10790 1.03084 1.48310 1.27714 0.84934 0.97548 0.98619 1.70908 1.21482 1.07699 1.22368 1.23758 0.91943 0.90395 1.09016 1.16981 0.82234 0.85629 0.79044 1.91041 1.85196 1.14590 1.48142 1.47812 1.03567 1.11178 1.69245 1.22863 1.05272 0.78687 0.97755 1.21904 0.95935 1.01835 0.97032 1.21525 0.97377 0.93087 1.02985 1.22019 0.99621 0.98550 0.97135 1.21289 0.84864 0.89025 0.98917 0.88846 1.22109 0.96981 0.92660 1.00089 0.90097 1.21520 0.96864 0.94225 1.01305 1.21970 0.99568 0.97517 0.97716 1.20480 0.89125 0.92869 0.92043 1.44128 1.09124 1.02395 1.76654 1.19169 0.85046 1.01330 1.32387 0.94406 1.25758 1.00213 1.01143 0.96930 1.70244 1.33852 1.17680 1.35630 0.85454 0.80504 0.78601 0.77106 1.21009 1.21207 1.20246 1.21261 0.96051 0.84178 0.93431 1.74374 1.03658 1.15974 1.19980 0.87930 0.83228 0.89373 0.69940 0.90189 0.84457 0.88061 0.94134 0.89921 0.90902 0.89914 0.93698 0.90376 0.92224 0.94134 0.90808 0.95199 0.98401 0.94160 0.98780 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 11.38 127.77 1.45 2.04 16 2 N -0.30 -5.93 3.72 -373.45 -1.39 -7.32 16 3 C 0.21 2.96 12.62 180.30 2.27 5.24 16 4 N -0.50 -11.81 7.82 -193.03 -1.51 -13.32 16 5 C 0.13 4.32 7.66 137.13 1.05 5.37 16 6 C 0.58 22.65 6.88 86.80 0.60 23.25 16 7 O -0.52 -25.34 10.34 -3.88 -0.04 -25.38 16 8 N -0.58 -18.51 2.96 -799.20 -2.36 -20.88 16 9 C 0.08 1.73 6.14 86.36 0.53 2.26 16 10 C -0.13 -2.61 6.08 30.67 0.19 -2.42 16 11 C -0.11 -2.25 5.89 30.62 0.18 -2.07 16 12 C -0.14 -3.80 4.63 30.53 0.14 -3.66 16 13 C 0.16 5.06 2.62 44.83 0.12 5.17 16 14 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 15 C -0.10 -4.04 1.57 -10.72 -0.02 -4.05 16 16 H 0.08 3.88 5.61 -30.68 -0.17 3.71 16 17 C -0.10 -3.70 4.97 30.62 0.15 -3.55 16 18 C -0.13 -5.53 6.08 30.67 0.19 -5.34 16 19 C 0.18 9.90 5.36 86.36 0.46 10.36 16 20 N -0.60 -35.60 2.95 -699.11 -2.06 -37.66 16 21 C -0.25 -16.18 9.46 84.03 0.79 -15.39 16 22 H 0.04 2.61 7.93 -2.91 -0.02 2.59 16 23 C -0.04 -2.83 4.69 84.86 0.40 -2.43 16 24 N -0.93 -60.74 12.09 21.65 0.26 -60.48 16 25 Si 0.96 50.66 29.61 68.60 2.03 52.69 16 26 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 28 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 29 C 0.18 8.99 4.38 86.36 0.38 9.37 16 30 N -0.30 -10.01 12.09 -52.44 -0.63 -10.65 16 31 H 0.10 0.58 8.14 -2.38 -0.02 0.57 16 32 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.29 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.14 3.24 4.02 -28.78 -0.12 3.12 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 2.16 7.05 -2.39 -0.02 2.15 16 42 H 0.04 1.58 5.84 -2.39 -0.01 1.57 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 2.09 6.96 -2.39 -0.02 2.07 16 45 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.03 1.80 6.72 -2.38 -0.02 1.78 16 48 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 50 H -0.01 -0.27 5.88 -2.39 -0.01 -0.29 16 51 H 0.04 2.34 5.05 -2.92 -0.01 2.32 16 Total: -1.00 -93.79 380.54 3.85 -89.93 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.67 Total: 8.90 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 8.89 Total: 24.16 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -7.70 Total: -150.30 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.03 Total: 52.69 kcal Total: -93.79 3.85 -89.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053084330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.615 kcal (2) G-P(sol) polarization free energy of solvation -93.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds