Wall clock time and date at job start Wed Apr 1 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34811 * 126.59298 * 2 1 4 4 C 1.36600 * 106.83811 * 180.15064 * 3 2 1 5 5 C 1.47518 * 125.77049 * 179.89574 * 4 3 2 6 6 O 1.21601 * 120.00330 * 6.74311 * 5 4 3 7 7 N 1.34782 * 120.00056 * 186.74188 * 5 4 3 8 8 C 1.46926 * 120.63043 * 354.19456 * 7 5 4 9 9 C 1.53186 * 108.77579 * 126.36914 * 8 7 5 10 10 C 1.53043 * 109.30888 * 54.63967 * 9 8 7 11 11 C 1.53074 * 109.65937 * 298.69665 * 10 9 8 12 12 C 1.46922 * 120.63168 * 174.17586 * 7 5 4 13 13 H 1.09003 * 109.58797 * 113.69763 * 12 7 5 14 14 C 1.53008 * 109.58747 * 353.41605 * 12 7 5 15 15 H 1.08998 * 109.51985 * 54.60986 * 14 12 7 16 16 C 1.53033 * 109.49419 * 294.52425 * 14 12 7 17 17 C 1.53044 * 109.52250 * 178.67332 * 16 14 12 18 18 C 1.53192 * 109.31013 * 61.37513 * 17 16 14 19 19 N 1.46924 * 108.77522 * 305.36304 * 18 17 16 20 20 C 1.36940 * 120.62493 * 233.63073 * 19 18 17 21 21 H 1.08008 * 119.99368 * 144.15644 * 20 19 18 22 22 C 1.38807 * 120.00496 * 324.14487 * 20 19 18 23 23 N 1.31624 * 119.99849 * 3.04562 * 22 20 19 24 24 Si 1.86802 * 120.00246 * 183.03477 * 22 20 19 25 25 H 1.48499 * 109.46832 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46898 * 120.00321 * 24 22 20 27 27 H 1.48494 * 109.47091 * 240.00552 * 24 22 20 28 28 C 1.46921 * 118.73775 * 53.61132 * 19 18 17 29 29 N 1.34403 * 108.45602 * 359.63582 * 4 3 2 30 30 N 1.28761 * 109.52566 * 0.22939 * 29 4 3 31 31 H 1.09000 * 109.47064 * 270.26965 * 1 2 3 32 32 H 1.08998 * 109.46978 * 30.26964 * 1 2 3 33 33 H 1.08997 * 109.47247 * 150.26978 * 1 2 3 34 34 H 1.08001 * 126.58357 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.58644 * 246.16687 * 8 7 5 36 36 H 1.09005 * 109.58120 * 6.58447 * 8 7 5 37 37 H 1.08996 * 109.49859 * 174.58390 * 9 8 7 38 38 H 1.08996 * 109.49913 * 294.69001 * 9 8 7 39 39 H 1.08994 * 109.46164 * 58.65642 * 10 9 8 40 40 H 1.09004 * 109.45881 * 178.61475 * 10 9 8 41 41 H 1.08998 * 109.38807 * 301.28016 * 11 10 9 42 42 H 1.08998 * 109.62193 * 181.17117 * 11 10 9 43 43 H 1.09000 * 109.46258 * 58.66468 * 16 14 12 44 44 H 1.08999 * 109.46343 * 298.68963 * 16 14 12 45 45 H 1.09005 * 109.49673 * 181.32183 * 17 16 14 46 46 H 1.08992 * 109.50212 * 301.38996 * 17 16 14 47 47 H 1.08999 * 109.58718 * 65.15072 * 18 17 16 48 48 H 1.09005 * 109.58425 * 185.42996 * 18 17 16 49 49 H 0.97000 * 120.00088 * 179.97438 * 23 22 20 50 50 H 1.08991 * 109.58983 * 66.17903 * 28 19 18 51 51 H 1.09001 * 109.58005 * 186.46315 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0034 5 6 4.7704 1.4557 -0.0069 6 8 4.6801 2.6620 0.1168 7 7 5.9817 0.8816 -0.1471 8 6 6.1187 -0.5811 -0.1702 9 6 6.8840 -0.9848 -1.4344 10 6 8.2133 -0.2281 -1.4844 11 6 7.9468 1.2781 -1.5415 12 6 7.1902 1.7064 -0.2802 13 1 7.8269 1.5655 0.5933 14 6 6.7953 3.1802 -0.3946 15 1 6.1675 3.4558 0.4528 16 6 6.0226 3.4023 -1.6967 17 6 5.5986 4.8695 -1.7959 18 6 6.8469 5.7572 -1.8170 19 7 7.6692 5.4450 -0.6401 20 6 8.0658 6.4368 0.2168 21 1 8.1314 6.2402 1.2768 22 6 8.3838 7.6946 -0.2768 23 7 8.2467 7.9517 -1.5604 24 14 9.0059 9.0224 0.8805 25 1 9.0703 8.4837 2.2628 26 1 10.3612 9.4549 0.4546 27 1 8.0814 10.1838 0.8439 28 6 8.0574 4.0485 -0.4000 29 7 3.5239 -0.7230 0.0026 30 7 2.3009 -1.1257 0.0048 31 1 -0.3633 0.0048 1.0277 32 1 -0.3633 0.8875 -0.5180 33 1 -0.3633 -0.8924 -0.5096 34 1 1.9561 2.1162 0.0004 35 1 6.6691 -0.9105 0.7111 36 1 5.1302 -1.0405 -0.1791 37 1 7.0765 -2.0574 -1.4162 38 1 6.2904 -0.7359 -2.3140 39 1 8.7959 -0.4582 -0.5925 40 1 8.7709 -0.5319 -2.3704 41 1 7.3453 1.5061 -2.4215 42 1 8.8934 1.8155 -1.5981 43 1 5.1369 2.7670 -1.7063 44 1 6.6595 3.1502 -2.5445 45 1 5.0281 5.0222 -2.7121 46 1 4.9817 5.1290 -0.9356 47 1 7.4186 5.5623 -2.7243 48 1 6.5501 6.8058 -1.7903 49 1 8.4685 8.8308 -1.9054 50 1 8.7278 3.7142 -1.1916 51 1 8.5616 3.9700 0.5632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053084359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:50 Heat of formation + Delta-G solvation = 127.756400 kcal Electronic energy + Delta-G solvation = -32793.220689 eV Core-core repulsion = 28732.206594 eV Total energy + Delta-G solvation = -4061.014096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.47132 -40.52819 -37.29563 -36.83452 -35.02248 -33.38240 -32.65651 -31.50987 -30.93471 -30.15901 -28.29042 -28.17782 -25.33720 -25.08175 -23.74966 -23.03842 -22.52663 -21.87707 -20.96387 -20.60271 -19.32209 -18.54046 -17.36730 -16.54708 -16.44898 -16.22545 -15.75033 -15.29254 -14.99659 -14.64998 -14.36236 -14.15965 -14.13014 -13.77233 -13.62172 -13.57582 -13.47917 -13.06907 -12.91009 -12.57135 -12.43802 -12.18365 -11.96262 -11.94876 -11.47322 -11.40776 -11.06485 -10.85968 -10.77801 -10.70436 -10.64223 -10.54106 -10.32760 -10.15179 -9.91796 -9.83034 -9.65028 -9.35110 -9.21645 -9.06623 -8.58994 -8.28265 -8.21637 -6.32219 -5.62934 -3.15005 0.92260 1.58930 1.76884 3.08318 3.38340 3.44527 3.51475 3.54088 4.01234 4.04983 4.51249 4.54879 4.60204 4.77200 4.83972 4.90232 5.00055 5.08419 5.11718 5.22982 5.31441 5.49464 5.53533 5.56570 5.65016 5.83340 5.93866 5.99164 6.02333 6.05166 6.05535 6.16454 6.20342 6.24834 6.36235 6.41591 6.53391 6.61503 6.69494 6.80702 6.88878 6.95340 7.08165 7.18262 7.27639 7.47255 7.61784 7.73722 7.76912 7.92661 8.02476 8.43518 8.69626 9.41576 10.02103 10.63127 11.42777 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.003255 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.710902 B = 8601.178079 C = 9891.340301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.363 5.363 3 C 0.091 3.909 4 C -0.090 4.090 5 C 0.591 3.409 6 O -0.500 6.500 7 N -0.589 5.589 8 C 0.068 3.932 9 C -0.129 4.129 10 C -0.121 4.121 11 C -0.134 4.134 12 C 0.155 3.845 13 H 0.069 0.931 14 C -0.110 4.110 15 H 0.114 0.886 16 C -0.087 4.087 17 C -0.135 4.135 18 C 0.170 3.830 19 N -0.590 5.590 20 C -0.245 4.245 21 H 0.061 0.939 22 C 0.006 3.994 23 N -0.905 5.905 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.151 3.849 29 N -0.209 5.209 30 N -0.073 5.073 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.141 0.859 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.008 0.992 48 H 0.092 0.908 49 H 0.251 0.749 50 H 0.013 0.987 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -20.194 0.783 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.148 5.148 3 C -0.065 4.065 4 C -0.229 4.229 5 C 0.376 3.624 6 O -0.375 6.375 7 N -0.321 5.321 8 C -0.056 4.056 9 C -0.168 4.168 10 C -0.159 4.159 11 C -0.172 4.172 12 C 0.052 3.948 13 H 0.087 0.913 14 C -0.130 4.130 15 H 0.131 0.869 16 C -0.124 4.124 17 C -0.175 4.175 18 C 0.044 3.956 19 N -0.312 5.312 20 C -0.375 4.375 21 H 0.079 0.921 22 C -0.192 4.192 23 N -0.550 5.550 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.024 3.976 29 N -0.081 5.081 30 N -0.053 5.053 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.027 0.973 48 H 0.110 0.890 49 H 0.062 0.938 50 H 0.030 0.970 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.799 -20.894 0.783 25.051 hybrid contribution 0.226 1.636 0.417 1.704 sum -13.573 -19.258 1.201 23.591 Atomic orbital electron populations 1.22203 0.72558 1.05805 1.04783 1.50313 1.09057 1.05695 1.49765 1.23419 0.90078 0.95045 0.97959 1.21845 0.95201 0.90022 1.15852 1.16834 0.81460 0.86176 0.77939 1.90938 1.85337 1.12565 1.48655 1.47846 1.05959 1.07200 1.71073 1.22799 1.05648 0.79873 0.97299 1.21851 0.96741 0.99708 0.98462 1.21571 0.96914 0.95716 1.01697 1.22102 1.01180 0.95203 0.98748 1.21422 0.84417 0.91821 0.97151 0.91315 1.22389 0.99057 0.90135 1.01432 0.86892 1.21568 0.97976 0.97269 0.95621 1.22116 1.00218 0.95912 0.99215 1.20883 0.87791 0.98958 0.87947 1.43895 1.58076 1.01257 1.27983 1.19204 1.38243 0.91095 0.88993 0.92103 1.25307 0.99389 0.99013 0.95528 1.69947 1.51891 1.21335 1.11860 0.86239 0.78483 0.81832 0.80414 1.20294 1.21670 1.21802 1.21030 0.92740 0.86068 0.97791 1.74059 1.11797 1.10592 1.11664 1.81982 0.93891 1.06911 1.22491 0.89212 0.88290 0.88139 0.77691 0.92121 0.84295 0.91277 0.91965 0.92094 0.92143 0.91004 0.90232 0.93443 0.94586 0.94678 0.92634 0.97344 0.89043 0.93835 0.96953 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 11.51 59.85 0.69 0.96 16 2 N -0.36 -3.04 4.03 -67.85 -0.27 -3.32 16 3 C 0.09 0.89 11.32 -16.83 -0.19 0.70 16 4 C -0.09 -1.15 6.77 -83.55 -0.57 -1.72 16 5 C 0.59 9.03 6.21 -12.48 -0.08 8.95 16 6 O -0.50 -8.98 10.67 5.28 0.06 -8.92 16 7 N -0.59 -8.48 2.94 -166.44 -0.49 -8.97 16 8 C 0.07 0.81 6.33 -3.71 -0.02 0.78 16 9 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 10 C -0.12 -1.37 5.88 -26.67 -0.16 -1.53 16 11 C -0.13 -1.89 4.68 -26.60 -0.12 -2.02 16 12 C 0.15 2.41 2.65 -67.60 -0.18 2.23 16 13 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.11 -2.12 1.58 -90.50 -0.14 -2.27 16 15 H 0.11 2.48 5.63 -53.49 -0.30 2.18 16 16 C -0.09 -1.69 3.58 -26.69 -0.10 -1.79 16 17 C -0.14 -2.96 6.04 -26.61 -0.16 -3.12 16 18 C 0.17 4.39 5.24 -3.71 -0.02 4.37 16 19 N -0.59 -15.74 2.99 -172.33 -0.52 -16.26 16 20 C -0.25 -7.07 9.55 -15.06 -0.14 -7.21 16 21 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 22 C 0.01 0.16 5.30 -17.43 -0.09 0.07 16 23 N -0.91 -27.14 10.70 55.49 0.59 -26.55 16 24 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.15 3.37 5.68 -3.71 -0.02 3.35 16 29 N -0.21 -2.62 8.64 32.85 0.28 -2.33 16 30 N -0.07 -0.83 13.78 60.35 0.83 0.00 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.14 1.70 3.60 -130.80 -0.47 1.23 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.09 6.06 -51.93 -0.31 0.78 16 42 H 0.08 1.16 6.78 -51.93 -0.35 0.81 16 43 H 0.05 0.89 5.09 -51.93 -0.26 0.62 16 44 H 0.04 0.70 6.30 -51.93 -0.33 0.37 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 1.28 8.08 -51.93 -0.42 0.86 16 47 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.09 2.64 6.00 -51.93 -0.31 2.33 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.01 0.28 6.52 -51.93 -0.34 -0.06 16 51 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -34.44 378.79 -8.43 -42.87 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.13 Total: 0.18 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.47 Total: 0.21 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.43 Total: -57.43 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.44 -8.43 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053084359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.622 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds