Wall clock time and date at job start Wed Apr 1 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34821 * 126.58990 * 2 1 4 4 C 1.36597 * 106.83490 * 180.02562 * 3 2 1 5 5 C 1.47523 * 125.76724 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00171 * 7.31886 * 5 4 3 7 7 N 1.34777 * 120.00002 * 187.32010 * 5 4 3 8 8 C 1.46922 * 120.62843 * 6.91144 * 7 5 4 9 9 C 1.53196 * 108.77680 * 233.62958 * 8 7 5 10 10 C 1.53037 * 109.31286 * 305.36914 * 9 8 7 11 11 C 1.53046 * 109.54134 * 61.36284 * 10 9 8 12 12 C 1.46925 * 120.62999 * 186.93712 * 7 5 4 13 13 H 1.09000 * 109.58988 * 246.29444 * 12 7 5 14 14 C 1.52997 * 109.59019 * 6.58100 * 12 7 5 15 15 H 1.09000 * 109.49843 * 306.09963 * 14 12 7 16 16 C 1.53043 * 109.50341 * 186.03071 * 14 12 7 17 17 C 1.53035 * 109.54015 * 178.65163 * 16 14 12 18 18 C 1.53185 * 109.31370 * 61.36537 * 17 16 14 19 19 N 1.46932 * 108.77707 * 305.36090 * 18 17 16 20 20 C 1.36933 * 120.63225 * 233.63093 * 19 18 17 21 21 H 1.08003 * 119.99927 * 144.63068 * 20 19 18 22 22 C 1.38809 * 120.00057 * 324.63059 * 20 19 18 23 23 N 1.31618 * 120.00166 * 4.17371 * 22 20 19 24 24 Si 1.86802 * 119.99692 * 184.17202 * 22 20 19 25 25 H 1.48492 * 109.47445 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47140 * 120.00227 * 24 22 20 27 27 H 1.48500 * 109.47059 * 239.99907 * 24 22 20 28 28 C 1.46927 * 118.73226 * 53.61250 * 19 18 17 29 29 N 1.34400 * 108.46190 * 0.23648 * 4 3 2 30 30 N 1.28766 * 109.52083 * 359.58972 * 29 4 3 31 31 H 1.09003 * 109.46983 * 90.00354 * 1 2 3 32 32 H 1.09002 * 109.46913 * 210.00218 * 1 2 3 33 33 H 1.08995 * 109.47731 * 330.00551 * 1 2 3 34 34 H 1.07994 * 126.57994 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.58807 * 353.41998 * 8 7 5 36 36 H 1.09009 * 109.58487 * 113.84783 * 8 7 5 37 37 H 1.09007 * 109.49390 * 65.31653 * 9 8 7 38 38 H 1.08998 * 109.50065 * 185.41362 * 9 8 7 39 39 H 1.09002 * 109.45992 * 181.37905 * 10 9 8 40 40 H 1.08997 * 109.46119 * 301.34386 * 10 9 8 41 41 H 1.08998 * 109.49976 * 178.67731 * 11 10 9 42 42 H 1.09005 * 109.49299 * 58.58175 * 11 10 9 43 43 H 1.09001 * 109.45548 * 58.62334 * 16 14 12 44 44 H 1.08997 * 109.45586 * 298.67632 * 16 14 12 45 45 H 1.09007 * 109.49674 * 301.41179 * 17 16 14 46 46 H 1.09003 * 109.52285 * 181.33569 * 17 16 14 47 47 H 1.08999 * 109.58799 * 65.15416 * 18 17 16 48 48 H 1.09006 * 109.58777 * 185.57898 * 18 17 16 49 49 H 0.96999 * 119.99987 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58249 * 186.60516 * 28 19 18 51 51 H 1.08994 * 109.70782 * 66.24662 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0825 0.0000 4 6 3.5542 0.6208 -0.0006 5 6 4.7703 1.4559 -0.0013 6 8 4.6803 2.6611 0.1327 7 7 5.9811 0.8830 -0.1506 8 6 6.0988 -0.5476 -0.4639 9 6 7.0188 -1.2047 0.5699 10 6 8.3538 -0.4574 0.6069 11 6 8.1159 0.9952 1.0261 12 6 7.2083 1.6772 -0.0025 13 1 7.7218 1.7386 -0.9620 14 6 6.8533 3.0849 0.4803 15 1 6.1136 3.5234 -0.1895 16 6 8.1127 3.9545 0.4900 17 6 7.7525 5.3719 0.9407 18 6 7.1878 5.3229 2.3638 19 7 6.0644 4.3763 2.3946 20 6 4.8415 4.7602 2.8763 21 1 3.9386 4.3713 2.4290 22 6 4.7622 5.6491 3.9395 23 7 5.8584 6.1865 4.4312 24 14 3.0995 6.0828 4.6722 25 1 2.0318 5.3506 3.9450 26 1 3.0753 5.6985 6.1065 27 1 2.8697 7.5446 4.5475 28 6 6.2784 3.0100 1.8983 29 7 3.5239 -0.7228 -0.0062 30 7 2.3008 -1.1256 -0.0004 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.9559 2.1162 -0.0004 35 1 5.1137 -1.0126 -0.4243 36 1 6.5231 -0.6697 -1.4605 37 1 6.5504 -1.1615 1.5533 38 1 7.1916 -2.2449 0.2941 39 1 9.0192 -0.9379 1.3242 40 1 8.8099 -0.4796 -0.3828 41 1 9.0696 1.5206 1.0750 42 1 7.6371 1.0175 2.0051 43 1 8.5376 3.9892 -0.5131 44 1 8.8424 3.5288 1.1787 45 1 7.0043 5.7889 0.2665 46 1 8.6452 5.9971 0.9248 47 1 7.9639 4.9917 3.0537 48 1 6.8381 6.3142 2.6526 49 1 5.8030 6.8080 5.1739 50 1 5.3287 2.4752 1.8797 51 1 6.9792 2.4879 2.5496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053084360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:53 Heat of formation + Delta-G solvation = 106.270842 kcal Electronic energy + Delta-G solvation = -33295.207244 eV Core-core repulsion = 29233.261465 eV Total energy + Delta-G solvation = -4061.945779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.28471 -41.69587 -38.72592 -38.20808 -35.78351 -35.12784 -33.71259 -33.09017 -32.16348 -31.75195 -29.60387 -28.76984 -27.18235 -26.45623 -24.83066 -24.21987 -23.69222 -23.30681 -22.30406 -21.75310 -20.59057 -19.94246 -18.59878 -18.27494 -17.31716 -17.09880 -16.92551 -16.72845 -16.24073 -15.90724 -15.66824 -15.53101 -15.12602 -15.03530 -14.94456 -14.71918 -14.42920 -14.10318 -14.03681 -13.98097 -13.85132 -13.67509 -13.35796 -13.04732 -12.96536 -12.83296 -12.69921 -12.56131 -12.21167 -12.08761 -12.01697 -11.81203 -11.69005 -11.52321 -11.45170 -11.32699 -11.08069 -10.91418 -10.79406 -10.47325 -10.26826 -9.83887 -9.37935 -8.39087 -7.77163 -5.30956 0.16424 0.63988 1.17536 1.43020 1.44338 1.55215 2.05483 2.33096 2.53199 3.16864 3.34577 3.44324 3.69355 3.88113 3.97600 3.98992 4.01512 4.10801 4.19266 4.26760 4.34766 4.36023 4.37415 4.43412 4.46309 4.62934 4.65605 4.66905 4.71794 4.83190 4.88122 4.99719 5.05261 5.06994 5.11348 5.15361 5.20481 5.20992 5.29069 5.38609 5.46228 5.48757 5.50651 5.57381 5.63952 5.69885 5.74476 5.90067 6.06075 6.50612 6.56689 6.89311 7.26701 7.32952 8.00058 8.53828 9.26120 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.005138 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.200895 B = 5448.557862 C = 8002.572991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.349 5.349 3 C 0.099 3.901 4 C -0.117 4.117 5 C 0.583 3.417 6 O -0.529 6.529 7 N -0.593 5.593 8 C 0.071 3.929 9 C -0.125 4.125 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.161 3.839 13 H 0.088 0.912 14 C -0.104 4.104 15 H 0.096 0.904 16 C -0.101 4.101 17 C -0.131 4.131 18 C 0.173 3.827 19 N -0.605 5.605 20 C -0.240 4.240 21 H 0.055 0.945 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.289 1.289 28 C 0.173 3.827 29 N -0.216 5.216 30 N -0.089 5.089 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.222 0.778 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.064 0.936 47 H -0.014 1.014 48 H 0.061 0.939 49 H 0.247 0.753 50 H 0.044 0.956 51 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -16.261 -13.976 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.059 4.059 4 C -0.257 4.257 5 C 0.369 3.631 6 O -0.406 6.406 7 N -0.325 5.325 8 C -0.052 4.052 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.058 3.942 13 H 0.106 0.894 14 C -0.123 4.123 15 H 0.113 0.887 16 C -0.139 4.139 17 C -0.170 4.170 18 C 0.047 3.953 19 N -0.328 5.328 20 C -0.371 4.371 21 H 0.073 0.927 22 C -0.249 4.249 23 N -0.587 5.587 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.216 1.216 28 C 0.048 3.952 29 N -0.089 5.089 30 N -0.069 5.069 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.238 0.762 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.004 0.996 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -4.798 -17.078 -13.782 22.463 hybrid contribution -0.825 1.670 1.054 2.141 sum -5.622 -15.407 -12.727 20.760 Atomic orbital electron populations 1.22708 0.69455 1.07537 1.06700 1.50611 1.10565 1.04384 1.47843 1.23690 0.89657 0.96045 0.96465 1.21668 0.95324 0.90385 1.18310 1.17212 0.82509 0.86233 0.77106 1.90951 1.85785 1.14115 1.49728 1.47901 1.04458 1.11113 1.69034 1.22828 1.05202 0.78758 0.98389 1.21820 0.95479 1.00307 0.98738 1.21525 0.97204 0.93731 1.02543 1.22060 0.99491 0.97246 0.98345 1.21325 0.84184 0.89826 0.98867 0.89447 1.22175 0.97278 0.93964 0.98917 0.88677 1.21516 0.96898 0.94852 1.00670 1.22009 0.99377 0.97309 0.98280 1.20708 0.87903 0.95047 0.91655 1.44158 1.08329 1.07413 1.72905 1.19415 0.85551 1.23710 1.08382 0.92738 1.26048 1.00153 1.01308 0.97407 1.70121 1.27749 1.33506 1.27291 0.85220 0.80329 0.77281 0.77854 1.19016 1.21919 1.21595 1.21202 0.96632 0.85584 0.91803 1.74073 1.12601 1.10264 1.11948 1.81850 0.93944 1.08009 1.23092 0.86940 0.86963 0.86226 0.76166 0.85022 0.90515 0.93811 0.88666 0.90975 0.90196 0.90135 0.93540 0.90882 0.92832 0.94136 0.91697 0.99571 0.92044 0.94382 0.93724 0.99132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.51 127.77 1.47 2.03 16 2 N -0.35 -6.71 4.03 -368.60 -1.49 -8.20 16 3 C 0.10 2.34 11.32 83.85 0.95 3.29 16 4 C -0.12 -3.48 6.74 40.82 0.28 -3.20 16 5 C 0.58 20.09 6.30 86.69 0.55 20.64 16 6 O -0.53 -22.00 10.77 -4.02 -0.04 -22.05 16 7 N -0.59 -17.78 2.94 -798.75 -2.35 -20.13 16 8 C 0.07 1.67 6.31 86.36 0.55 2.22 16 9 C -0.13 -2.67 6.08 30.67 0.19 -2.49 16 10 C -0.11 -2.31 5.88 30.62 0.18 -2.13 16 11 C -0.13 -3.67 4.67 30.67 0.14 -3.53 16 12 C 0.16 4.84 2.65 44.97 0.12 4.96 16 13 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.10 -4.00 1.57 -10.72 -0.02 -4.02 16 15 H 0.10 4.21 5.54 -33.88 -0.19 4.02 16 16 C -0.10 -3.65 4.93 30.62 0.15 -3.50 16 17 C -0.13 -5.55 6.08 30.67 0.19 -5.37 16 18 C 0.17 9.27 5.26 86.36 0.45 9.73 16 19 N -0.61 -33.89 3.00 -699.08 -2.10 -35.98 16 20 C -0.24 -14.41 9.55 84.03 0.80 -13.61 16 21 H 0.05 3.30 7.83 -2.91 -0.02 3.28 16 22 C -0.06 -3.30 5.32 84.86 0.45 -2.85 16 23 N -0.94 -58.72 10.62 21.65 0.23 -58.49 16 24 Si 0.97 47.29 29.56 68.60 2.03 49.31 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 C 0.17 8.26 4.52 86.36 0.39 8.65 16 29 N -0.22 -6.05 8.72 -49.99 -0.44 -6.48 16 30 N -0.09 -2.24 13.78 37.02 0.51 -1.73 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.22 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.13 3.35 3.69 -87.76 -0.32 3.02 16 36 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.08 2.09 6.94 -2.39 -0.02 2.07 16 42 H 0.05 1.58 5.91 -2.38 -0.01 1.57 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.88 6.83 -2.39 -0.02 1.87 16 45 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H 0.06 3.72 5.91 -2.38 -0.01 3.70 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.04 2.26 4.89 -2.38 -0.01 2.25 16 51 H -0.01 -0.44 5.92 -2.39 -0.01 -0.45 16 Total: -1.00 -79.15 379.11 3.65 -75.50 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.45 Total: 17.40 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.84 Total: 10.83 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -5.63 Total: -131.01 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.04 Total: -22.05 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.15 3.65 -75.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053084360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.773 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds