Wall clock time and date at job start Wed Apr 1 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28515 * 124.44946 * 2 1 4 4 C 1.31136 * 109.06112 * 179.73244 * 3 2 1 5 5 C 1.40925 * 105.77498 * 0.43683 * 4 3 2 6 6 C 1.47800 * 127.23470 * 179.84168 * 5 4 3 7 7 O 1.21555 * 120.00492 * 353.48551 * 6 5 4 8 8 N 1.34779 * 119.99676 * 173.49563 * 6 5 4 9 9 C 1.46933 * 120.63244 * 353.20492 * 8 6 5 10 10 C 1.53187 * 108.76909 * 126.37383 * 9 8 6 11 11 C 1.53036 * 109.31394 * 54.64072 * 10 9 8 12 12 C 1.53074 * 109.65895 * 298.69550 * 11 10 9 13 13 C 1.46925 * 120.63103 * 173.19542 * 8 6 5 14 14 H 1.08995 * 109.59119 * 113.69489 * 13 8 6 15 15 C 1.53010 * 109.58552 * 353.40755 * 13 8 6 16 16 H 1.09004 * 109.51925 * 54.67294 * 15 13 8 17 17 C 1.53040 * 109.49629 * 174.75052 * 15 13 8 18 18 C 1.53044 * 109.52286 * 181.31002 * 17 15 13 19 19 C 1.53189 * 109.31480 * 298.64206 * 18 17 15 20 20 N 1.46931 * 108.77322 * 54.63893 * 19 18 17 21 21 C 1.36936 * 120.63049 * 126.41681 * 20 19 18 22 22 H 1.07999 * 119.99863 * 209.77215 * 21 20 19 23 23 C 1.38809 * 120.00133 * 29.76741 * 21 20 19 24 24 N 1.31618 * 119.99914 * 20.86180 * 23 21 20 25 25 Si 1.86797 * 120.00013 * 200.85410 * 23 21 20 26 26 H 1.48498 * 109.47273 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47114 * 120.00107 * 25 23 21 28 28 H 1.48494 * 109.47364 * 240.00163 * 25 23 21 29 29 C 1.46928 * 118.73708 * 306.38812 * 20 19 18 30 30 N 1.28594 * 124.43960 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47349 * 269.98093 * 1 2 3 32 32 H 1.09003 * 109.46806 * 29.97480 * 1 2 3 33 33 H 1.08996 * 109.47641 * 149.97335 * 1 2 3 34 34 H 1.08005 * 127.11319 * 180.28584 * 4 3 2 35 35 H 1.08992 * 109.58676 * 246.16258 * 9 8 6 36 36 H 1.08999 * 109.58190 * 6.59390 * 9 8 6 37 37 H 1.09009 * 109.49633 * 174.58695 * 10 9 8 38 38 H 1.09003 * 109.50359 * 294.68286 * 10 9 8 39 39 H 1.09003 * 109.46536 * 58.65085 * 11 10 9 40 40 H 1.09006 * 109.46320 * 178.61171 * 11 10 9 41 41 H 1.09002 * 109.38856 * 301.27782 * 12 11 10 42 42 H 1.08995 * 109.62314 * 181.17527 * 12 11 10 43 43 H 1.09000 * 109.45848 * 61.30001 * 17 15 13 44 44 H 1.08998 * 109.46155 * 301.32307 * 17 15 13 45 45 H 1.09006 * 109.49486 * 58.59684 * 18 17 15 46 46 H 1.09000 * 109.49475 * 178.65875 * 18 17 15 47 47 H 1.08998 * 109.58223 * 174.42261 * 19 18 17 48 48 H 1.08991 * 109.58789 * 294.70728 * 19 18 17 49 49 H 0.97001 * 119.99778 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.58442 * 173.40270 * 29 20 19 51 51 H 1.09006 * 109.58928 * 293.68188 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7118 0.0058 5 6 3.4658 -0.6974 -0.0008 6 6 4.6486 -1.5837 -0.0013 7 8 5.7626 -1.1108 -0.1150 8 7 4.4919 -2.9165 0.1242 9 6 3.1704 -3.4913 0.4106 10 6 2.8569 -4.5563 -0.6449 11 6 3.9930 -5.5809 -0.6832 12 6 5.3003 -4.8859 -1.0719 13 6 5.6394 -3.8222 -0.0229 14 1 5.8492 -4.3044 0.9318 15 6 6.8655 -3.0272 -0.4765 16 1 7.0432 -2.2049 0.2166 17 6 8.0890 -3.9463 -0.5031 18 6 9.3221 -3.1441 -0.9252 19 6 9.1054 -2.5863 -2.3354 20 7 7.8519 -1.8199 -2.3532 21 6 7.8314 -0.5262 -2.8017 22 1 7.1117 0.1726 -2.4017 23 6 8.7359 -0.1130 -3.7702 24 7 9.3204 -1.0009 -4.5463 25 14 9.1231 1.7032 -3.9723 26 1 8.3405 2.4891 -2.9849 27 1 10.5734 1.9283 -3.7456 28 1 8.7639 2.1360 -5.3466 29 6 6.6207 -2.4682 -1.8813 30 7 2.1922 -1.0605 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 4.3131 1.3693 0.0116 35 1 3.1773 -3.9483 1.4000 36 1 2.4148 -2.7065 0.3735 37 1 1.9232 -5.0578 -0.3897 38 1 2.7608 -4.0830 -1.6221 39 1 4.1048 -6.0361 0.3009 40 1 3.7608 -6.3535 -1.4162 41 1 5.1822 -4.4115 -2.0461 42 1 6.1049 -5.6197 -1.1193 43 1 7.9205 -4.7546 -1.2146 44 1 8.2505 -4.3647 0.4904 45 1 9.4767 -2.3206 -0.2279 46 1 10.1975 -3.7936 -0.9210 47 1 9.9366 -1.9335 -2.6018 48 1 9.0436 -3.4086 -3.0481 49 1 9.9521 -0.7120 -5.2234 50 1 5.8126 -1.7375 -1.8483 51 1 6.3524 -3.2794 -2.5581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053100037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:08 Heat of formation + Delta-G solvation = 142.320136 kcal Electronic energy + Delta-G solvation = -33355.692417 eV Core-core repulsion = 29295.309853 eV Total energy + Delta-G solvation = -4060.382565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.69798 -40.60360 -37.32123 -36.87456 -34.08778 -33.44700 -33.01259 -32.23052 -31.35004 -30.14783 -28.38629 -28.04671 -25.45482 -25.01395 -23.95694 -23.22569 -22.19311 -21.86956 -21.01189 -20.68443 -19.17907 -18.42852 -17.45723 -17.08858 -16.65484 -16.37630 -15.61008 -15.03232 -14.85443 -14.69901 -14.34999 -14.14833 -13.97497 -13.73319 -13.69166 -13.38518 -13.20853 -13.16430 -12.96965 -12.59716 -12.31835 -12.17374 -12.05047 -11.84103 -11.47073 -11.35585 -10.96856 -10.95268 -10.73690 -10.65719 -10.54461 -10.40067 -10.28135 -10.08973 -10.02945 -9.85420 -9.68290 -9.41580 -9.23133 -9.11193 -8.59604 -8.26675 -8.16399 -6.35930 -5.56978 -2.94412 1.29901 1.98103 2.03786 3.11127 3.46611 3.50651 3.58433 3.62925 3.86040 4.54813 4.66822 4.70137 4.81228 4.91283 4.94240 4.95293 5.01659 5.10219 5.24228 5.39578 5.44024 5.54777 5.60945 5.61752 5.70633 5.78365 5.84592 5.87261 5.93111 6.00381 6.04582 6.07562 6.13072 6.19458 6.32573 6.45668 6.52561 6.57735 6.63306 6.70967 6.85313 6.90796 6.95087 7.11111 7.22377 7.43508 7.57668 7.65239 7.81539 8.06289 8.08711 8.49412 8.71576 9.46457 10.12315 10.71151 11.51939 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.004722 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.686017 B = 5927.647478 C = 8120.199501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.153 5.153 3 N -0.291 5.291 4 C 0.038 3.962 5 C -0.030 4.030 6 C 0.590 3.410 7 O -0.470 6.470 8 N -0.595 5.595 9 C 0.080 3.920 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.138 4.138 13 C 0.159 3.841 14 H 0.065 0.935 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.106 4.106 18 C -0.139 4.139 19 C 0.173 3.827 20 N -0.583 5.583 21 C -0.231 4.231 22 H 0.064 0.936 23 C -0.003 4.003 24 N -0.905 5.905 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.294 1.294 29 C 0.162 3.838 30 N -0.258 5.258 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.013 0.987 49 H 0.249 0.751 50 H 0.062 0.938 51 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.434 -6.441 12.435 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.054 5.054 3 N -0.132 5.132 4 C -0.145 4.145 5 C -0.193 4.193 6 C 0.374 3.626 7 O -0.341 6.341 8 N -0.329 5.329 9 C -0.044 4.044 10 C -0.168 4.168 11 C -0.157 4.157 12 C -0.176 4.176 13 C 0.056 3.944 14 H 0.083 0.917 15 C -0.136 4.136 16 H 0.133 0.867 17 C -0.144 4.144 18 C -0.178 4.178 19 C 0.047 3.953 20 N -0.305 5.305 21 C -0.361 4.361 22 H 0.082 0.918 23 C -0.201 4.201 24 N -0.550 5.550 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.221 1.221 29 C 0.036 3.964 30 N -0.106 5.106 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.226 0.774 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.031 0.969 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -19.083 -6.099 12.225 23.469 hybrid contribution 1.043 0.697 -0.268 1.283 sum -18.040 -5.401 11.957 22.307 Atomic orbital electron populations 1.22190 0.70230 1.06110 1.05014 1.48188 1.09058 0.99635 1.48527 1.74013 1.04008 1.15370 1.19779 1.24899 0.94167 0.93881 1.01535 1.23452 0.91185 0.95061 1.09595 1.16843 0.86010 0.81451 0.78312 1.91002 1.21935 1.74863 1.46340 1.47797 1.09683 1.04869 1.70513 1.22502 0.85697 0.98831 0.97386 1.21843 0.98173 0.96749 0.99994 1.21552 0.95250 0.97663 1.01268 1.22128 0.97109 0.97914 1.00415 1.21375 0.85539 0.89787 0.97670 0.91711 1.22458 0.90915 0.97774 1.02435 0.86672 1.21537 0.96165 0.97754 0.98941 1.22128 0.95567 0.98633 1.01494 1.20650 0.90348 0.94315 0.89975 1.43911 1.01765 1.11522 1.73262 1.19216 1.16831 0.85756 1.14274 0.91784 1.24987 1.02290 0.96965 0.95826 1.70109 1.32076 1.32172 1.20649 0.86370 0.77902 0.86324 0.77191 1.20216 1.21826 1.22144 1.21229 0.90619 0.94628 0.89884 1.74037 1.03329 1.14566 1.18714 0.89082 0.87749 0.87788 0.77379 0.92354 0.85488 0.91374 0.91553 0.92298 0.92064 0.90287 0.90677 0.93200 0.94189 0.92775 0.93795 0.90738 0.96851 0.94155 0.92005 0.97992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.55 59.84 0.69 1.24 16 2 N -0.15 -1.70 4.35 -16.64 -0.07 -1.77 16 3 N -0.29 -3.85 12.01 30.90 0.37 -3.48 16 4 C 0.04 0.55 12.05 -16.83 -0.20 0.35 16 5 C -0.03 -0.46 6.92 -82.68 -0.57 -1.03 16 6 C 0.59 9.96 6.30 -12.35 -0.08 9.88 16 7 O -0.47 -9.59 10.80 5.32 0.06 -9.53 16 8 N -0.59 -8.69 2.94 -166.34 -0.49 -9.18 16 9 C 0.08 0.91 6.33 -3.71 -0.02 0.88 16 10 C -0.13 -1.34 6.08 -26.62 -0.16 -1.50 16 11 C -0.12 -1.28 5.88 -26.67 -0.16 -1.44 16 12 C -0.14 -1.88 4.68 -26.60 -0.12 -2.01 16 13 C 0.16 2.39 2.65 -67.60 -0.18 2.21 16 14 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.12 -2.19 1.58 -90.51 -0.14 -2.33 16 16 H 0.12 2.47 5.61 -53.55 -0.30 2.17 16 17 C -0.11 -1.91 4.91 -26.69 -0.13 -2.04 16 18 C -0.14 -2.88 6.08 -26.61 -0.16 -3.04 16 19 C 0.17 4.41 5.32 -3.71 -0.02 4.40 16 20 N -0.58 -15.66 2.98 -172.34 -0.51 -16.17 16 21 C -0.23 -6.78 9.53 -15.06 -0.14 -6.92 16 22 H 0.06 1.91 7.91 -52.49 -0.42 1.50 16 23 C 0.00 -0.09 4.79 -17.43 -0.08 -0.18 16 24 N -0.90 -27.75 11.59 55.49 0.64 -27.10 16 25 Si 0.89 23.00 29.60 -169.99 -5.03 17.97 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 29 C 0.16 3.71 4.51 -3.73 -0.02 3.69 16 30 N -0.26 -3.27 8.58 33.42 0.29 -2.98 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.21 2.79 8.06 -52.48 -0.42 2.36 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.13 1.45 3.81 -97.31 -0.37 1.08 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 42 H 0.07 0.99 6.92 -51.93 -0.36 0.63 16 43 H 0.05 0.88 6.80 -51.93 -0.35 0.53 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 2.11 6.32 -51.93 -0.33 1.78 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.06 1.49 4.78 -51.93 -0.25 1.24 16 51 H 0.00 0.06 5.94 -51.93 -0.31 -0.25 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.11 379.56 -8.58 -43.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.04 Total: 0.67 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.51 Total: 2.17 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.23 Total: -60.68 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.11 -8.58 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053100037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.006 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds