Wall clock time and date at job start Wed Apr 1 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28515 * 124.44946 * 2 1 4 4 C 1.31136 * 109.06112 * 179.73244 * 3 2 1 5 5 C 1.40925 * 105.77498 * 0.43683 * 4 3 2 6 6 C 1.47800 * 127.23470 * 179.84168 * 5 4 3 7 7 O 1.21555 * 120.00492 * 353.48551 * 6 5 4 8 8 N 1.34779 * 119.99676 * 173.49563 * 6 5 4 9 9 C 1.46933 * 120.63244 * 353.20492 * 8 6 5 10 10 C 1.53187 * 108.76909 * 126.37383 * 9 8 6 11 11 C 1.53036 * 109.31394 * 54.64072 * 10 9 8 12 12 C 1.53074 * 109.65895 * 298.69550 * 11 10 9 13 13 C 1.46925 * 120.63103 * 173.19542 * 8 6 5 14 14 H 1.08995 * 109.59119 * 113.69489 * 13 8 6 15 15 C 1.53010 * 109.58552 * 353.40755 * 13 8 6 16 16 H 1.09004 * 109.51925 * 54.67294 * 15 13 8 17 17 C 1.53040 * 109.49629 * 174.75052 * 15 13 8 18 18 C 1.53044 * 109.52286 * 181.31002 * 17 15 13 19 19 C 1.53189 * 109.31480 * 298.64206 * 18 17 15 20 20 N 1.46931 * 108.77322 * 54.63893 * 19 18 17 21 21 C 1.36936 * 120.63049 * 126.41681 * 20 19 18 22 22 H 1.07999 * 119.99863 * 209.77215 * 21 20 19 23 23 C 1.38809 * 120.00133 * 29.76741 * 21 20 19 24 24 N 1.31618 * 119.99914 * 20.86180 * 23 21 20 25 25 Si 1.86797 * 120.00013 * 200.85410 * 23 21 20 26 26 H 1.48498 * 109.47273 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47114 * 120.00107 * 25 23 21 28 28 H 1.48494 * 109.47364 * 240.00163 * 25 23 21 29 29 C 1.46928 * 118.73708 * 306.38812 * 20 19 18 30 30 N 1.28594 * 124.43960 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47349 * 269.98093 * 1 2 3 32 32 H 1.09003 * 109.46806 * 29.97480 * 1 2 3 33 33 H 1.08996 * 109.47641 * 149.97335 * 1 2 3 34 34 H 1.08005 * 127.11319 * 180.28584 * 4 3 2 35 35 H 1.08992 * 109.58676 * 246.16258 * 9 8 6 36 36 H 1.08999 * 109.58190 * 6.59390 * 9 8 6 37 37 H 1.09009 * 109.49633 * 174.58695 * 10 9 8 38 38 H 1.09003 * 109.50359 * 294.68286 * 10 9 8 39 39 H 1.09003 * 109.46536 * 58.65085 * 11 10 9 40 40 H 1.09006 * 109.46320 * 178.61171 * 11 10 9 41 41 H 1.09002 * 109.38856 * 301.27782 * 12 11 10 42 42 H 1.08995 * 109.62314 * 181.17527 * 12 11 10 43 43 H 1.09000 * 109.45848 * 61.30001 * 17 15 13 44 44 H 1.08998 * 109.46155 * 301.32307 * 17 15 13 45 45 H 1.09006 * 109.49486 * 58.59684 * 18 17 15 46 46 H 1.09000 * 109.49475 * 178.65875 * 18 17 15 47 47 H 1.08998 * 109.58223 * 174.42261 * 19 18 17 48 48 H 1.08991 * 109.58789 * 294.70728 * 19 18 17 49 49 H 0.97001 * 119.99778 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.58442 * 173.40270 * 29 20 19 51 51 H 1.09006 * 109.58928 * 293.68188 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7118 0.0058 5 6 3.4658 -0.6974 -0.0008 6 6 4.6486 -1.5837 -0.0013 7 8 5.7626 -1.1108 -0.1150 8 7 4.4919 -2.9165 0.1242 9 6 3.1704 -3.4913 0.4106 10 6 2.8569 -4.5563 -0.6449 11 6 3.9930 -5.5809 -0.6832 12 6 5.3003 -4.8859 -1.0719 13 6 5.6394 -3.8222 -0.0229 14 1 5.8492 -4.3044 0.9318 15 6 6.8655 -3.0272 -0.4765 16 1 7.0432 -2.2049 0.2166 17 6 8.0890 -3.9463 -0.5031 18 6 9.3221 -3.1441 -0.9252 19 6 9.1054 -2.5863 -2.3354 20 7 7.8519 -1.8199 -2.3532 21 6 7.8314 -0.5262 -2.8017 22 1 7.1117 0.1726 -2.4017 23 6 8.7359 -0.1130 -3.7702 24 7 9.3204 -1.0009 -4.5463 25 14 9.1231 1.7032 -3.9723 26 1 8.3405 2.4891 -2.9849 27 1 10.5734 1.9283 -3.7456 28 1 8.7639 2.1360 -5.3466 29 6 6.6207 -2.4682 -1.8813 30 7 2.1922 -1.0605 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 4.3131 1.3693 0.0116 35 1 3.1773 -3.9483 1.4000 36 1 2.4148 -2.7065 0.3735 37 1 1.9232 -5.0578 -0.3897 38 1 2.7608 -4.0830 -1.6221 39 1 4.1048 -6.0361 0.3009 40 1 3.7608 -6.3535 -1.4162 41 1 5.1822 -4.4115 -2.0461 42 1 6.1049 -5.6197 -1.1193 43 1 7.9205 -4.7546 -1.2146 44 1 8.2505 -4.3647 0.4904 45 1 9.4767 -2.3206 -0.2279 46 1 10.1975 -3.7936 -0.9210 47 1 9.9366 -1.9335 -2.6018 48 1 9.0436 -3.4086 -3.0481 49 1 9.9521 -0.7120 -5.2234 50 1 5.8126 -1.7375 -1.8483 51 1 6.3524 -3.2794 -2.5581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053100037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:07 Heat of formation + Delta-G solvation = 118.966335 kcal Electronic energy + Delta-G solvation = -33356.705114 eV Core-core repulsion = 29295.309853 eV Total energy + Delta-G solvation = -4061.395261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.70229 -41.88000 -38.80878 -38.25551 -35.44016 -34.71351 -34.20453 -33.35625 -32.83628 -32.16668 -29.67437 -28.95308 -27.18030 -26.56269 -24.99258 -24.52450 -23.76500 -23.10504 -22.49746 -21.75372 -20.63682 -19.80203 -18.60128 -18.38689 -18.02584 -17.66436 -16.93094 -16.71461 -16.33560 -15.82806 -15.72252 -15.63424 -15.16790 -15.11665 -14.99505 -14.82610 -14.32008 -14.14256 -13.99898 -13.88957 -13.77688 -13.61064 -13.37308 -13.02301 -12.96771 -12.85738 -12.69044 -12.42794 -12.19978 -12.09725 -11.99778 -11.90501 -11.76539 -11.56680 -11.52500 -11.39602 -11.10008 -10.95502 -10.83651 -10.48551 -10.37270 -9.96582 -9.42699 -8.53393 -7.82379 -5.23741 0.23399 0.88145 1.27239 1.41765 1.43521 1.56136 2.00833 2.25537 2.54029 2.85952 3.28726 3.54272 3.79209 3.91622 3.97963 4.02140 4.07475 4.18053 4.24564 4.29477 4.32499 4.33930 4.36314 4.42579 4.48329 4.61078 4.64485 4.68029 4.74685 4.81319 4.86962 4.97280 5.01432 5.02599 5.04691 5.09434 5.15000 5.18483 5.27630 5.29790 5.43772 5.47815 5.52085 5.54883 5.59117 5.69142 5.74143 5.81762 6.02710 6.43915 6.48333 7.02354 7.21704 7.26852 7.97523 8.49794 9.23511 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.004722 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.686017 B = 5927.647478 C = 8120.199501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.136 5.136 3 N -0.296 5.296 4 C 0.019 3.981 5 C -0.057 4.057 6 C 0.584 3.416 7 O -0.520 6.520 8 N -0.592 5.592 9 C 0.076 3.924 10 C -0.125 4.125 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.162 3.838 14 H 0.092 0.908 15 C -0.103 4.103 16 H 0.092 0.908 17 C -0.101 4.101 18 C -0.129 4.129 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.241 4.241 22 H 0.050 0.950 23 C -0.052 4.052 24 N -0.935 5.935 25 Si 0.956 3.044 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.290 1.290 29 C 0.170 3.830 30 N -0.244 5.244 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.205 0.795 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.038 0.962 48 H -0.007 1.007 49 H 0.247 0.753 50 H 0.044 0.956 51 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.937 -8.147 14.436 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.040 5.040 3 N -0.137 5.137 4 C -0.163 4.163 5 C -0.218 4.218 6 C 0.370 3.630 7 O -0.395 6.395 8 N -0.325 5.325 9 C -0.046 4.046 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.059 3.941 14 H 0.110 0.890 15 C -0.123 4.123 16 H 0.110 0.890 17 C -0.139 4.139 18 C -0.168 4.168 19 C 0.053 3.947 20 N -0.324 5.324 21 C -0.372 4.372 22 H 0.068 0.932 23 C -0.247 4.247 24 N -0.582 5.582 25 Si 0.785 3.215 26 H -0.196 1.196 27 H -0.214 1.214 28 H -0.217 1.217 29 C 0.045 3.955 30 N -0.094 5.094 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.011 0.989 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -21.629 -7.841 14.253 27.064 hybrid contribution 1.625 1.229 -0.903 2.229 sum -20.004 -6.612 13.350 24.942 Atomic orbital electron populations 1.22827 0.66810 1.08053 1.07414 1.48871 1.10750 0.98784 1.45595 1.74002 1.03588 1.16074 1.20075 1.24939 0.94849 0.94017 1.02447 1.23189 0.91610 0.94966 1.12004 1.17138 0.85974 0.82308 0.77587 1.90978 1.23774 1.75858 1.48875 1.47932 1.10959 1.04164 1.69437 1.22738 0.83830 0.99148 0.98915 1.21835 0.99634 0.96363 0.98472 1.21532 0.93199 0.97583 1.02756 1.22076 0.99465 0.97545 0.98139 1.21339 0.84116 0.89476 0.99142 0.89022 1.22135 0.93552 0.97752 0.98869 0.89015 1.21515 0.94126 0.97156 1.01072 1.21976 0.98240 0.98984 0.97635 1.20499 0.88758 0.92784 0.92616 1.44182 1.03517 1.11215 1.73503 1.19344 1.16722 0.87033 1.14114 0.93233 1.25694 1.02331 1.01043 0.95660 1.70235 1.32709 1.33984 1.21275 0.85366 0.77596 0.81436 0.77126 1.19592 1.21414 1.21737 1.21253 0.88606 0.93530 0.92068 1.74011 1.02381 1.14825 1.18155 0.86387 0.86204 0.85573 0.77776 0.90010 0.85510 0.88128 0.93749 0.90055 0.90891 0.93651 0.89923 0.92513 0.90445 0.93882 0.91189 0.94303 0.98865 0.94369 0.93785 0.99042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.55 127.77 1.48 2.11 16 2 N -0.14 -2.79 4.35 -206.55 -0.90 -3.69 16 3 N -0.30 -7.68 12.01 -56.16 -0.67 -8.35 16 4 C 0.02 0.57 12.05 85.46 1.03 1.60 16 5 C -0.06 -1.76 6.92 42.24 0.29 -1.46 16 6 C 0.58 20.35 6.30 86.77 0.55 20.90 16 7 O -0.52 -22.49 10.80 -3.89 -0.04 -22.53 16 8 N -0.59 -16.82 2.94 -798.46 -2.35 -19.16 16 9 C 0.08 1.53 6.33 86.36 0.55 2.08 16 10 C -0.12 -2.20 6.08 30.67 0.19 -2.02 16 11 C -0.11 -2.02 5.88 30.63 0.18 -1.84 16 12 C -0.13 -3.44 4.68 30.68 0.14 -3.30 16 13 C 0.16 4.62 2.65 44.98 0.12 4.74 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.10 -3.93 1.58 -10.72 -0.02 -3.95 16 16 H 0.09 4.05 5.61 -28.06 -0.16 3.89 16 17 C -0.10 -3.50 4.91 30.62 0.15 -3.35 16 18 C -0.13 -5.36 6.08 30.67 0.19 -5.17 16 19 C 0.18 9.55 5.32 86.36 0.46 10.01 16 20 N -0.60 -34.01 2.98 -699.16 -2.08 -36.09 16 21 C -0.24 -14.93 9.53 84.03 0.80 -14.13 16 22 H 0.05 3.15 7.91 -2.91 -0.02 3.13 16 23 C -0.05 -3.22 4.79 84.86 0.41 -2.81 16 24 N -0.94 -59.71 11.59 21.65 0.25 -59.46 16 25 Si 0.96 49.09 29.60 68.60 2.03 51.12 16 26 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 C 0.17 8.16 4.51 86.35 0.39 8.55 16 30 N -0.24 -5.89 8.58 -48.17 -0.41 -6.30 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 2.61 3.81 -61.10 -0.23 2.37 16 37 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.04 1.47 5.92 -2.39 -0.01 1.46 16 42 H 0.08 1.98 6.92 -2.39 -0.02 1.97 16 43 H 0.06 1.91 6.80 -2.39 -0.02 1.89 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.04 2.31 6.32 -2.39 -0.02 2.29 16 48 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 49 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 50 H 0.04 2.26 4.78 -2.39 -0.01 2.25 16 51 H -0.01 -0.39 5.94 -2.38 -0.01 -0.41 16 Total: -1.00 -81.82 379.56 3.30 -78.52 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.57 Total: 13.98 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.90 Total: 11.97 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.16 Total: -133.06 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -81.82 3.30 -78.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053100037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.488 kcal (2) G-P(sol) polarization free energy of solvation -81.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds