Wall clock time and date at job start Wed Apr 1 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35313 * 125.86725 * 2 1 4 4 C 1.35351 * 106.17297 * 180.11090 * 3 2 1 5 5 C 1.50700 * 126.75200 * 179.84916 * 4 3 2 6 6 C 1.53004 * 109.47217 * 124.71609 * 5 4 3 7 7 C 1.50700 * 109.47217 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99918 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.02562 * 7 6 5 10 10 C 1.46930 * 120.70182 * 359.97438 * 9 7 6 11 11 C 1.53189 * 109.01576 * 125.76300 * 10 9 7 12 12 C 1.53411 * 109.14557 * 55.17861 * 11 10 9 13 13 C 1.52236 * 109.71014 * 299.88710 * 12 11 10 14 14 C 1.54495 * 110.24692 * 297.07656 * 13 12 11 15 15 C 1.55030 * 101.52728 * 276.23471 * 14 13 12 16 16 N 1.47490 * 104.89848 * 323.64505 * 15 14 13 17 17 C 1.36934 * 125.65588 * 204.02637 * 16 15 14 18 18 H 1.08002 * 119.99603 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00454 * 359.97274 * 17 16 15 20 20 N 1.31620 * 119.99583 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00078 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46873 * 60.00503 * 21 19 17 23 23 H 1.48497 * 109.47210 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47267 * 300.00720 * 21 19 17 25 25 C 1.47188 * 108.67708 * 24.00223 * 16 15 14 26 26 C 1.47079 * 120.69789 * 179.97438 * 9 7 6 27 27 N 1.33771 * 106.49718 * 359.59618 * 4 3 2 28 28 N 1.28632 * 108.88590 * 0.25280 * 27 4 3 29 29 H 1.09003 * 109.47838 * 270.32828 * 1 2 3 30 30 H 1.09002 * 109.47193 * 30.33033 * 1 2 3 31 31 H 1.09001 * 109.47101 * 150.32449 * 1 2 3 32 32 H 1.08001 * 126.91795 * 359.96668 * 3 2 1 33 33 H 1.09002 * 109.47173 * 4.71801 * 5 4 3 34 34 H 1.09005 * 109.47638 * 244.71745 * 5 4 3 35 35 H 1.09002 * 109.46892 * 60.00020 * 6 5 4 36 36 H 1.09000 * 109.47198 * 300.00182 * 6 5 4 37 37 H 1.09002 * 109.56451 * 245.65489 * 10 9 7 38 38 H 1.09000 * 109.56222 * 5.87813 * 10 9 7 39 39 H 1.09002 * 109.50400 * 175.21914 * 11 10 9 40 40 H 1.08993 * 109.50381 * 295.34087 * 11 10 9 41 41 H 1.09003 * 109.40404 * 179.81578 * 12 11 10 42 42 H 1.08999 * 109.38457 * 59.94702 * 12 11 10 43 43 H 1.09001 * 111.01577 * 34.29898 * 14 13 12 44 44 H 1.09008 * 111.01261 * 158.17695 * 14 13 12 45 45 H 1.08999 * 110.35512 * 204.78692 * 15 14 13 46 46 H 1.09000 * 110.44154 * 82.54277 * 15 14 13 47 47 H 0.96999 * 119.99581 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.91467 * 239.12863 * 25 16 15 49 49 H 1.09003 * 110.06389 * 117.94650 * 25 16 15 50 50 H 1.08999 * 109.58283 * 352.26805 * 26 9 7 51 51 H 1.09003 * 109.58028 * 112.53547 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 -0.0025 5 6 4.7880 1.4734 -0.0067 6 6 5.6700 1.0722 1.1774 7 6 6.9256 1.9056 1.1736 8 8 7.0978 2.7387 0.3091 9 7 7.8571 1.7251 2.1307 10 6 7.6640 0.7206 3.1855 11 6 8.8770 -0.2146 3.2122 12 6 10.1528 0.6208 3.3798 13 6 10.2875 1.5916 2.2149 14 6 10.4397 0.8159 0.8874 15 6 11.9608 0.5166 0.8761 16 7 12.5871 1.7127 1.4699 17 6 13.8766 2.1243 1.2634 18 1 14.2418 3.0187 1.7463 19 6 14.7145 1.3922 0.4334 20 7 14.2692 0.3025 -0.1555 21 14 16.4734 1.9542 0.1511 22 1 17.1956 1.9904 1.4482 23 1 17.1543 1.0070 -0.7677 24 1 16.4687 3.3117 -0.4509 25 6 11.5957 2.3906 2.3208 26 6 9.0884 2.5295 2.1414 27 7 3.4575 -0.6952 0.0051 28 7 2.2191 -1.0431 0.0066 29 1 -0.3635 0.0059 1.0276 30 1 -0.3634 0.8870 -0.5190 31 1 -0.3633 -0.8929 -0.5088 32 1 1.9381 2.1282 -0.0005 33 1 4.5249 2.5278 0.0770 34 1 5.3311 1.3072 -0.9371 35 1 5.9331 0.0178 1.0936 36 1 5.1269 1.2384 2.1077 37 1 7.5657 1.2185 4.1501 38 1 6.7627 0.1434 2.9792 39 1 8.7821 -0.9100 4.0462 40 1 8.9276 -0.7718 2.2769 41 1 11.0186 -0.0410 3.4027 42 1 10.0989 1.1801 4.3138 43 1 9.8599 -0.1069 0.9052 44 1 10.1573 1.4370 0.0373 45 1 12.3114 0.3729 -0.1459 46 1 12.1799 -0.3648 1.4789 47 1 14.8546 -0.2088 -0.7357 48 1 11.4379 3.4095 1.9674 49 1 11.9387 2.4056 3.3554 50 1 9.1446 3.1235 1.2292 51 1 9.0854 3.1905 3.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054248537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:48 Heat of formation + Delta-G solvation = 89.221212 kcal Electronic energy + Delta-G solvation = -30963.274577 eV Core-core repulsion = 26900.589470 eV Total energy + Delta-G solvation = -4062.685107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.55330 -40.37357 -38.44154 -35.82842 -35.45121 -33.75165 -32.96805 -31.77752 -30.73869 -29.84735 -28.57019 -28.28946 -26.16427 -25.57780 -24.41888 -23.26747 -22.41191 -22.09730 -21.19815 -20.10011 -19.02202 -18.03535 -17.66436 -16.99697 -16.88152 -16.71155 -15.75661 -15.66734 -15.09285 -14.99086 -14.59252 -14.30712 -14.17552 -13.90853 -13.64758 -13.59258 -13.26397 -13.20548 -12.92472 -12.80257 -12.53569 -12.26685 -12.13721 -11.89379 -11.79525 -11.52102 -11.45522 -11.08692 -10.94373 -10.89615 -10.82615 -10.68033 -10.47767 -10.37762 -10.06316 -9.99904 -9.92297 -9.64381 -9.59712 -9.40580 -9.35244 -8.56449 -8.39284 -6.74586 -5.57198 -2.98609 1.25140 1.99370 2.23425 2.75227 3.11444 3.45362 3.49248 3.50821 3.92797 4.17316 4.40505 4.43598 4.55454 4.66201 4.72577 4.75881 4.81886 4.98390 5.06085 5.09902 5.15461 5.23626 5.32944 5.39493 5.40787 5.51478 5.58685 5.65501 5.75836 5.78430 5.88307 5.95142 5.99161 6.02787 6.02890 6.08874 6.19418 6.22080 6.37343 6.47456 6.53498 6.60130 6.71279 6.82611 6.91494 7.02873 7.54482 7.62083 7.70582 7.95665 8.20950 8.30203 8.45200 9.30033 9.91088 10.57119 11.46340 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.002028 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.788823 B =13802.972617 C =14088.177824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.050 4.050 4 C -0.014 4.014 5 C -0.017 4.017 6 C -0.132 4.132 7 C 0.516 3.484 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.108 3.892 11 C -0.137 4.137 12 C -0.099 4.099 13 C -0.083 4.083 14 C -0.130 4.130 15 C 0.155 3.845 16 N -0.602 5.602 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.150 3.850 26 C 0.130 3.870 27 N -0.262 5.262 28 N -0.088 5.088 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.638 0.680 5.770 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.091 5.091 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.057 4.057 6 C -0.172 4.172 7 C 0.304 3.696 8 O -0.421 6.421 9 N -0.339 5.339 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.137 4.137 13 C -0.085 4.085 14 C -0.169 4.169 15 C 0.030 3.970 16 N -0.328 5.328 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.023 3.977 26 C 0.007 3.993 27 N -0.129 5.129 28 N -0.067 5.067 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.208 0.792 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.366 -0.490 5.197 29.826 hybrid contribution 0.656 1.332 0.057 1.486 sum -28.710 0.842 5.254 29.199 Atomic orbital electron populations 1.22259 0.72793 1.05939 1.04979 1.47242 1.09381 1.05010 1.47450 1.23423 0.90877 0.94733 1.11031 1.22082 0.95376 0.91478 1.06304 1.19626 0.89307 0.97320 0.99407 1.21598 0.94038 1.01522 1.00067 1.20550 0.84662 0.83660 0.80749 1.90700 1.78752 1.35957 1.36672 1.48118 1.19828 1.38192 1.27731 1.21743 0.98945 0.90146 0.90692 1.22048 0.94767 0.97901 1.02814 1.21381 0.97482 0.97770 0.97060 1.21333 0.94340 0.95965 0.96825 1.23010 1.00365 0.98542 0.94958 1.21917 0.85851 0.87828 1.01384 1.44516 1.08740 1.26865 1.52703 1.19027 0.85861 1.06979 1.23067 0.90634 1.24782 0.98518 0.97434 1.00048 1.69812 1.34615 1.17582 1.35060 0.86162 0.84253 0.77576 0.77559 1.21311 1.21636 1.21211 1.21141 0.87735 0.94485 0.94333 1.21535 0.82084 0.92756 1.02882 1.75081 1.09280 1.12086 1.16445 1.78331 0.96513 1.12120 1.19752 0.89083 0.88301 0.88040 0.79206 0.89338 0.89040 0.88049 0.89247 0.91539 0.90033 0.91007 0.90835 0.90844 0.92413 0.92436 0.92342 0.87966 0.97216 0.93779 0.95903 0.96002 0.88898 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.39 59.84 0.68 0.85 16 2 N -0.30 -2.22 3.74 -68.06 -0.25 -2.48 16 3 C -0.05 -0.36 11.54 -17.05 -0.20 -0.56 16 4 C -0.01 -0.15 6.50 -82.78 -0.54 -0.68 16 5 C -0.02 -0.17 5.08 -27.88 -0.14 -0.31 16 6 C -0.13 -1.36 4.03 -27.88 -0.11 -1.47 16 7 C 0.52 7.12 7.70 -10.99 -0.08 7.04 16 8 O -0.54 -9.46 15.41 5.55 0.09 -9.37 16 9 N -0.61 -8.08 2.83 -173.11 -0.49 -8.56 16 10 C 0.11 1.12 6.32 -3.71 -0.02 1.10 16 11 C -0.14 -1.64 5.92 -26.42 -0.16 -1.79 16 12 C -0.10 -1.49 4.55 -26.91 -0.12 -1.61 16 13 C -0.08 -1.45 0.55 -154.07 -0.09 -1.54 16 14 C -0.13 -2.62 5.73 -24.87 -0.14 -2.76 16 15 C 0.15 3.88 5.57 -2.43 -0.01 3.86 16 16 N -0.60 -15.77 3.40 -170.23 -0.58 -16.35 16 17 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.58 10.09 55.49 0.56 -27.02 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.17 6.43 -3.33 -0.02 3.15 16 26 C 0.13 2.01 4.98 -4.02 -0.02 1.99 16 27 N -0.26 -3.32 12.40 33.29 0.41 -2.91 16 28 N -0.09 -1.00 13.16 60.35 0.79 -0.20 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.19 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.10 1.07 7.71 -51.93 -0.40 0.67 16 36 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 41 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.06 6.00 -51.93 -0.31 0.75 16 44 H 0.06 1.26 7.91 -51.92 -0.41 0.85 16 45 H 0.10 2.92 5.88 -51.93 -0.31 2.61 16 46 H 0.01 0.26 7.76 -51.93 -0.40 -0.14 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.02 0.49 7.80 -51.93 -0.40 0.08 16 49 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 50 H 0.09 1.67 6.87 -51.93 -0.36 1.31 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -36.51 396.67 -7.94 -44.46 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.20 Total: -1.46 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.23 Total: 0.34 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.44 Total: -57.53 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.51 -7.94 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054248537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.677 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds