Wall clock time and date at job start Wed Apr 1 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35310 * 125.86817 * 2 1 4 4 C 1.35353 * 106.17525 * 180.11604 * 3 2 1 5 5 C 1.50696 * 126.75438 * 179.85082 * 4 3 2 6 6 C 1.53003 * 109.46639 * 124.71734 * 5 4 3 7 7 C 1.50709 * 109.46655 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00082 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99826 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.69973 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.92517 * 234.13862 * 10 9 7 12 12 C 1.53171 * 109.27241 * 304.77527 * 11 10 9 13 13 C 1.52240 * 109.65342 * 60.17825 * 12 11 10 14 14 C 1.54497 * 110.25144 * 62.91396 * 13 12 11 15 15 C 1.55028 * 101.51945 * 83.78451 * 14 13 12 16 16 N 1.47484 * 104.90567 * 36.35499 * 15 14 13 17 17 C 1.36936 * 125.66484 * 156.25283 * 16 15 14 18 18 H 1.08001 * 120.00285 * 179.69765 * 17 16 15 19 19 C 1.38816 * 119.99847 * 359.69050 * 17 16 15 20 20 N 1.31613 * 119.99787 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47056 * 60.00008 * 21 19 17 23 23 H 1.48493 * 109.46989 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46923 * 300.00290 * 21 19 17 25 25 C 1.47196 * 108.67297 * 335.99003 * 16 15 14 26 26 C 1.47079 * 120.70141 * 179.97438 * 9 7 6 27 27 N 1.33778 * 106.49084 * 359.59743 * 4 3 2 28 28 N 1.28626 * 108.88733 * 0.25931 * 27 4 3 29 29 H 1.09001 * 109.46947 * 270.32748 * 1 2 3 30 30 H 1.09005 * 109.46906 * 30.32492 * 1 2 3 31 31 H 1.08993 * 109.47324 * 150.31818 * 1 2 3 32 32 H 1.08006 * 126.91603 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.46960 * 4.71850 * 5 4 3 34 34 H 1.08997 * 109.47246 * 244.71679 * 5 4 3 35 35 H 1.08989 * 109.47121 * 60.00436 * 6 5 4 36 36 H 1.08997 * 109.47257 * 299.99939 * 6 5 4 37 37 H 1.09008 * 109.55866 * 114.30807 * 10 9 7 38 38 H 1.08996 * 109.56701 * 353.97303 * 10 9 7 39 39 H 1.08995 * 109.50783 * 184.83940 * 11 10 9 40 40 H 1.09000 * 109.50442 * 64.71319 * 11 10 9 41 41 H 1.08998 * 109.44315 * 300.12104 * 12 11 10 42 42 H 1.09004 * 109.41126 * 180.21391 * 12 11 10 43 43 H 1.08992 * 111.02163 * 201.84112 * 14 13 12 44 44 H 1.08996 * 111.01565 * 325.72886 * 14 13 12 45 45 H 1.09006 * 110.35503 * 277.49738 * 15 14 13 46 46 H 1.09000 * 110.35709 * 155.21379 * 15 14 13 47 47 H 0.97003 * 119.99806 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.90656 * 120.87813 * 25 16 15 49 49 H 1.09004 * 109.90845 * 242.14404 * 25 16 15 50 50 H 1.09003 * 109.57832 * 7.77475 * 26 9 7 51 51 H 1.08996 * 109.58090 * 247.37729 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5323 0.6404 -0.0026 5 6 4.7881 1.4733 -0.0068 6 6 5.6701 1.0719 1.1772 7 6 6.9258 1.9053 1.1733 8 8 7.0984 2.7379 0.3085 9 7 7.8569 1.7254 2.1310 10 6 7.6638 0.7208 3.1857 11 6 7.8142 1.3988 4.5512 12 6 9.1701 2.1082 4.6168 13 6 9.2509 3.1608 3.5198 14 6 8.1735 4.2461 3.7396 15 6 8.8790 5.1816 4.7547 16 7 10.2975 5.1784 4.3511 17 6 11.2084 6.1629 4.6272 18 1 12.2296 6.0638 4.2900 19 6 10.8191 7.2884 5.3405 20 7 9.5747 7.4089 5.7518 21 14 12.0615 8.6317 5.7166 22 1 12.5973 9.1804 4.4450 23 1 11.3999 9.7168 6.4847 24 1 13.1750 8.0654 6.5195 25 6 10.5732 3.9382 3.6077 26 6 9.0882 2.5298 2.1417 27 7 3.4576 -0.6953 0.0049 28 7 2.2192 -1.0430 0.0063 29 1 -0.3633 0.0059 1.0277 30 1 -0.3633 0.8871 -0.5189 31 1 -0.3633 -0.8927 -0.5088 32 1 1.9382 2.1282 -0.0004 33 1 4.5250 2.5278 0.0770 34 1 5.3312 1.3072 -0.9372 35 1 5.9332 0.0176 1.0933 36 1 5.1271 1.2380 2.1075 37 1 8.4132 -0.0642 3.0835 38 1 6.6667 0.2891 3.1004 39 1 7.7582 0.6474 5.3387 40 1 7.0151 2.1279 4.6854 41 1 9.9682 1.3788 4.4792 42 1 9.2810 2.5883 5.5891 43 1 7.9533 4.7722 2.8108 44 1 7.2678 3.8167 4.1679 45 1 8.7719 4.7921 5.7671 46 1 8.4687 6.1894 4.6900 47 1 9.3028 8.1952 6.2505 48 1 10.9304 4.1775 2.6061 49 1 11.3180 3.3451 4.1384 50 1 9.0193 3.3132 1.3870 51 1 9.9445 1.8897 1.9294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054248538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:53 Heat of formation + Delta-G solvation = 88.660234 kcal Electronic energy + Delta-G solvation = -30982.355450 eV Core-core repulsion = 26919.646018 eV Total energy + Delta-G solvation = -4062.709433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.55075 -40.38551 -38.45747 -35.84367 -35.44621 -33.74784 -32.98593 -31.80205 -30.74005 -29.85831 -28.59788 -28.28346 -26.16881 -25.59461 -24.42825 -23.28220 -22.40706 -22.11070 -21.19345 -20.12243 -19.02678 -18.05637 -17.65343 -16.98602 -16.89052 -16.72397 -15.74562 -15.68314 -15.10585 -14.96561 -14.64024 -14.37484 -14.09676 -13.87874 -13.68489 -13.56547 -13.29060 -13.22920 -13.05363 -12.69557 -12.50913 -12.31374 -12.15456 -11.89329 -11.82130 -11.52371 -11.48617 -11.08670 -10.96509 -10.92113 -10.84558 -10.69587 -10.49919 -10.37498 -10.08676 -10.01555 -9.94480 -9.66090 -9.60923 -9.41571 -9.36258 -8.58998 -8.39575 -6.76930 -5.59760 -3.00972 1.25996 2.00205 2.22800 2.75780 3.11000 3.43674 3.47598 3.48968 3.94004 4.18502 4.41564 4.45826 4.53448 4.67424 4.74525 4.76364 4.82806 4.97149 5.06099 5.09333 5.13771 5.23730 5.32859 5.38427 5.40108 5.50245 5.57235 5.65533 5.75984 5.76775 5.87292 5.93347 5.97745 6.01043 6.02494 6.06884 6.20015 6.20851 6.34488 6.44470 6.51494 6.58804 6.68850 6.79706 6.88804 7.00988 7.54284 7.58830 7.68247 7.92370 8.20370 8.30235 8.42356 9.27694 9.88743 10.54681 11.43858 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.002081 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.211417 B =13453.168143 C =13944.104462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.297 5.297 3 C -0.048 4.048 4 C -0.015 4.015 5 C -0.017 4.017 6 C -0.132 4.132 7 C 0.516 3.484 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.108 3.892 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.083 4.083 14 C -0.130 4.130 15 C 0.155 3.845 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.149 3.851 26 C 0.129 3.871 27 N -0.264 5.264 28 N -0.089 5.089 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.009 0.991 46 H 0.103 0.897 47 H 0.251 0.749 48 H 0.024 0.976 49 H 0.023 0.977 50 H 0.093 0.907 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 -16.738 -8.750 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.198 4.198 4 C -0.153 4.153 5 C -0.056 4.056 6 C -0.172 4.172 7 C 0.304 3.696 8 O -0.421 6.421 9 N -0.339 5.339 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.137 4.137 13 C -0.085 4.085 14 C -0.168 4.168 15 C 0.031 3.969 16 N -0.328 5.328 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.022 3.978 26 C 0.007 3.993 27 N -0.131 5.131 28 N -0.068 5.068 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.120 0.880 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.016 -17.638 -9.101 26.805 hybrid contribution 0.363 1.776 0.456 1.869 sum -17.653 -15.862 -8.646 25.259 Atomic orbital electron populations 1.22270 0.72732 1.05922 1.05064 1.47233 1.09406 1.04995 1.47391 1.23461 0.90877 0.94798 1.10692 1.22073 0.95412 0.91432 1.06402 1.19622 0.89286 0.97554 0.99165 1.21597 0.94142 1.01195 1.00286 1.20551 0.84437 0.83556 0.81072 1.90699 1.78553 1.35649 1.37180 1.48115 1.20369 1.38129 1.27260 1.21753 1.01963 0.90467 0.87359 1.22005 0.99392 1.00123 0.95952 1.21344 0.95851 0.96909 0.99627 1.21340 0.98120 0.95411 0.93587 1.23002 0.96335 0.96557 1.00935 1.21916 0.83376 0.99638 0.92016 1.44524 1.07436 1.17551 1.63338 1.19035 0.90936 0.96104 1.28768 0.90608 1.24779 0.96720 0.98572 1.00741 1.69807 1.15270 1.29143 1.42944 0.86158 0.80044 0.81452 0.77887 1.21189 1.21648 1.21299 1.21158 0.93017 0.88254 0.95327 1.21545 0.84845 0.94911 0.97984 1.75045 1.09357 1.12113 1.16630 1.78303 0.96502 1.12176 1.19862 0.89017 0.88251 0.88068 0.79112 0.89177 0.89226 0.88277 0.89026 0.91391 0.90035 0.91048 0.90996 0.92334 0.90869 0.92348 0.92549 0.97295 0.87971 0.93806 0.95805 0.95951 0.88870 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.19 11.39 59.85 0.68 0.87 16 2 N -0.30 -2.26 3.74 -68.05 -0.25 -2.52 16 3 C -0.05 -0.36 11.54 -17.05 -0.20 -0.56 16 4 C -0.02 -0.15 6.50 -82.77 -0.54 -0.69 16 5 C -0.02 -0.17 5.08 -27.88 -0.14 -0.31 16 6 C -0.13 -1.36 4.03 -27.88 -0.11 -1.47 16 7 C 0.52 7.12 7.70 -10.98 -0.08 7.04 16 8 O -0.54 -9.46 15.41 5.56 0.09 -9.37 16 9 N -0.61 -8.07 2.82 -173.09 -0.49 -8.56 16 10 C 0.11 1.12 6.32 -3.71 -0.02 1.10 16 11 C -0.14 -1.59 5.90 -26.54 -0.16 -1.74 16 12 C -0.10 -1.47 4.55 -27.03 -0.12 -1.60 16 13 C -0.08 -1.43 0.55 -154.06 -0.09 -1.52 16 14 C -0.13 -2.54 5.73 -24.87 -0.14 -2.69 16 15 C 0.16 3.82 5.57 -2.43 -0.01 3.80 16 16 N -0.60 -15.62 3.40 -170.23 -0.58 -16.20 16 17 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.27 10.09 55.49 0.56 -26.71 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.15 3.13 6.43 -3.33 -0.02 3.11 16 26 C 0.13 2.01 4.98 -4.01 -0.02 1.99 16 27 N -0.26 -3.26 12.40 33.29 0.41 -2.84 16 28 N -0.09 -1.00 13.16 60.35 0.79 -0.21 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.19 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.10 0.97 7.93 -51.94 -0.41 0.56 16 36 H 0.09 0.85 7.71 -51.93 -0.40 0.45 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.08 0.69 5.94 -51.93 -0.31 0.38 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 43 H 0.06 1.23 7.91 -51.93 -0.41 0.82 16 44 H 0.06 1.00 6.00 -51.93 -0.31 0.69 16 45 H 0.01 0.23 7.76 -51.93 -0.40 -0.17 16 46 H 0.10 2.87 5.88 -51.93 -0.31 2.56 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.02 0.51 7.80 -51.93 -0.40 0.10 16 49 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 50 H 0.09 1.67 6.87 -51.93 -0.36 1.31 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -36.01 396.64 -7.94 -43.96 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.20 Total: -1.39 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.23 Total: 0.48 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.44 Total: -57.04 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.01 -7.94 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054248538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.618 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds