Wall clock time and date at job start Wed Apr 1 2020 05:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47389 * 2 1 4 4 N 1.28518 * 124.44137 * 270.02499 * 3 2 1 5 5 C 1.31133 * 109.05725 * 179.68688 * 4 3 2 6 6 C 1.50709 * 127.11086 * 180.28984 * 5 4 3 7 7 C 1.40919 * 105.77874 * 0.43150 * 5 4 3 8 8 C 1.47798 * 127.23960 * 179.83317 * 7 5 4 9 9 O 1.21555 * 119.99732 * 353.77102 * 8 7 5 10 10 N 1.34773 * 119.99873 * 173.76819 * 8 7 5 11 11 C 1.46946 * 120.72313 * 353.24531 * 10 8 7 12 12 C 1.53189 * 108.90106 * 234.31012 * 11 10 8 13 13 C 1.53181 * 109.27527 * 304.60694 * 12 11 10 14 14 C 1.52066 * 109.72989 * 59.93459 * 13 12 11 15 15 C 1.54579 * 110.67793 * 64.30770 * 14 13 12 16 16 C 1.54471 * 102.76031 * 152.61258 * 15 14 13 17 17 N 1.47085 * 107.42588 * 338.69828 * 16 15 14 18 18 C 1.36937 * 125.62789 * 178.94543 * 17 16 15 19 19 H 1.08001 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00222 * 359.97257 * 18 17 16 21 21 N 1.31623 * 120.00161 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47395 * 90.00031 * 22 20 18 24 24 H 1.48499 * 109.47496 * 210.00278 * 22 20 18 25 25 H 1.48499 * 109.46905 * 330.00012 * 22 20 18 26 26 C 1.47573 * 108.74300 * 358.92593 * 17 16 15 27 27 C 1.47106 * 120.71621 * 173.22626 * 10 8 7 28 28 N 1.28583 * 124.44701 * 89.99195 * 3 2 1 29 29 H 1.08997 * 109.46997 * 60.00230 * 1 2 3 30 30 H 1.09009 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47297 * 299.99870 * 1 2 3 32 32 H 1.09000 * 109.46938 * 239.99440 * 2 1 3 33 33 H 1.09007 * 109.46800 * 119.99759 * 2 1 3 34 34 H 1.08997 * 109.46911 * 270.17101 * 6 5 4 35 35 H 1.09001 * 109.46932 * 30.16863 * 6 5 4 36 36 H 1.08994 * 109.46663 * 150.17325 * 6 5 4 37 37 H 1.08997 * 109.56368 * 114.47922 * 11 10 8 38 38 H 1.09000 * 109.65407 * 354.18871 * 11 10 8 39 39 H 1.09010 * 109.49865 * 184.67360 * 12 11 10 40 40 H 1.08996 * 109.53786 * 64.57415 * 12 11 10 41 41 H 1.08991 * 109.43082 * 299.85212 * 13 12 11 42 42 H 1.09005 * 109.38127 * 179.97438 * 13 12 11 43 43 H 1.09002 * 110.71045 * 34.34594 * 15 14 13 44 44 H 1.08998 * 110.86363 * 270.95704 * 15 14 13 45 45 H 1.09000 * 109.88051 * 219.19254 * 16 15 14 46 46 H 1.09010 * 109.87766 * 98.19374 * 16 15 14 47 47 H 0.96993 * 120.00475 * 179.97438 * 21 20 18 48 48 H 1.08994 * 110.37801 * 142.11696 * 26 17 16 49 49 H 1.09004 * 110.37241 * 264.47259 * 26 17 16 50 50 H 1.08995 * 109.57011 * 7.96806 * 27 10 8 51 51 H 1.09003 * 109.56173 * 247.61584 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2603 2.0666 -1.0599 5 6 2.6755 3.2608 -0.7120 6 6 3.0656 4.3909 -1.6296 7 6 2.6848 3.2678 0.6971 8 6 3.0790 4.3830 1.5834 9 8 3.5523 5.3975 1.1098 10 7 2.9135 4.2751 2.9165 11 6 2.2098 3.1219 3.4948 12 6 1.0723 3.6305 4.3858 13 6 1.6422 4.5901 5.4350 14 6 2.3108 5.7681 4.7439 15 6 1.2731 6.5989 3.9550 16 6 1.8998 8.0108 3.9490 17 7 2.8559 8.0731 5.0650 18 6 3.6355 9.1514 5.3883 19 1 4.3090 9.0977 6.2308 20 6 3.5601 10.3137 4.6330 21 7 2.7390 10.3794 3.6064 22 14 4.6230 11.7850 5.0744 23 1 5.9173 11.6952 4.3521 24 1 3.9240 13.0356 4.6840 25 1 4.8727 11.7939 6.5382 26 6 2.8360 6.7817 5.7790 27 6 3.4338 5.3090 3.8244 28 7 2.2607 2.0669 1.0604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.1298 4.3247 -1.8555 35 1 2.4929 4.3222 -2.5545 36 1 2.8561 5.3432 -1.1424 37 1 2.9052 2.5318 4.0916 38 1 1.7995 2.5045 2.6957 39 1 0.5961 2.7865 4.8851 40 1 0.3370 4.1541 3.7749 41 1 2.3755 4.0647 6.0466 42 1 0.8340 4.9535 6.0698 43 1 0.3125 6.6054 4.4701 44 1 1.1646 6.2206 2.9386 45 1 1.1220 8.7622 4.0849 46 1 2.4193 8.1817 3.0060 47 1 2.6861 11.1917 3.0789 48 1 3.8416 6.5100 6.0999 49 1 2.1638 6.8321 6.6357 50 1 3.7986 6.1556 3.2428 51 1 4.2475 4.8955 4.4203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054250412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:40 Heat of formation + Delta-G solvation = 109.193413 kcal Electronic energy + Delta-G solvation = -32398.366301 eV Core-core repulsion = 28336.547254 eV Total energy + Delta-G solvation = -4061.819047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.81619 -40.17573 -38.16827 -35.83582 -35.34215 -33.49395 -32.65577 -31.82186 -31.56974 -29.79228 -28.58153 -28.17794 -26.32602 -25.52359 -24.34393 -23.62195 -22.63964 -21.79904 -21.19908 -20.17484 -19.69087 -18.14834 -17.51403 -16.93837 -16.74105 -16.53545 -15.69034 -15.11748 -14.92316 -14.78743 -14.46411 -14.09590 -13.93876 -13.78555 -13.54905 -13.41063 -13.16152 -12.92954 -12.85585 -12.72316 -12.53232 -12.29941 -12.19857 -11.91255 -11.86403 -11.64617 -11.51866 -11.40340 -10.94966 -10.79919 -10.77402 -10.55183 -10.48572 -10.22966 -10.04004 -9.98157 -9.82200 -9.70424 -9.57540 -9.43026 -9.31902 -8.47615 -8.34546 -6.70376 -5.58714 -2.92351 1.21883 1.83668 1.90615 3.08957 3.35860 3.48011 3.52308 3.54440 3.72818 4.34583 4.34995 4.59092 4.60912 4.62027 4.74816 4.94079 5.05037 5.10110 5.16687 5.18030 5.29547 5.36899 5.44359 5.53724 5.55814 5.62072 5.64266 5.67165 5.75447 5.86080 5.87815 5.96013 6.03251 6.07619 6.12744 6.22476 6.28297 6.34701 6.42920 6.50327 6.54569 6.63378 6.68935 6.84471 6.87295 6.98609 7.57569 7.68525 7.79323 7.98260 8.00602 8.33225 8.38599 9.33822 9.94442 10.61107 11.52486 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003037 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.576354 B = 9217.676441 C =10345.690431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.147 5.147 4 N -0.293 5.293 5 C 0.062 3.938 6 C -0.069 4.069 7 C -0.035 4.035 8 C 0.601 3.399 9 O -0.513 6.513 10 N -0.593 5.593 11 C 0.088 3.912 12 C -0.131 4.131 13 C -0.102 4.102 14 C -0.086 4.086 15 C -0.127 4.127 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.149 3.851 27 C 0.135 3.865 28 N -0.251 5.251 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.021 0.979 50 H 0.107 0.893 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -24.655 -6.035 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.049 5.049 4 N -0.134 5.134 5 C -0.101 4.101 6 C -0.128 4.128 7 C -0.197 4.197 8 C 0.385 3.615 9 O -0.387 6.387 10 N -0.325 5.325 11 C -0.036 4.036 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.087 4.087 15 C -0.166 4.166 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.022 3.978 27 C 0.014 3.986 28 N -0.099 5.099 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.039 0.961 50 H 0.125 0.875 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.162 -25.160 -6.380 26.465 hybrid contribution 0.688 1.423 0.369 1.623 sum -4.474 -23.737 -6.011 24.892 Atomic orbital electron populations 1.22197 0.92911 1.03979 1.03922 1.22060 0.96190 0.74322 1.05969 1.48255 1.43895 1.13289 0.99474 1.73925 1.18979 1.05199 1.15325 1.23280 1.00477 0.93669 0.92719 1.20244 1.01995 0.93787 0.96742 1.23088 1.08749 0.93479 0.94426 1.16729 0.78993 0.84451 0.81296 1.90856 1.44811 1.28603 1.74400 1.47943 1.55779 1.23810 1.04964 1.22349 0.94232 0.87925 0.99056 1.21917 0.97884 0.99274 0.97864 1.21335 0.99853 0.95671 0.97137 1.21443 0.96001 0.94769 0.96531 1.22815 0.96936 0.98342 0.98494 1.21159 0.91801 0.89822 0.91790 1.44513 1.46661 1.09926 1.31953 1.19017 1.15728 0.90152 1.10710 0.90581 1.24790 0.99666 0.98054 0.97887 1.69981 1.39516 1.27159 1.19924 0.86156 0.79760 0.82472 0.77581 1.21647 1.21798 1.20834 1.21414 0.97564 0.86001 0.92826 1.21496 0.94746 0.91000 0.91344 1.74213 1.15971 1.04824 1.14862 0.91298 0.89481 0.91232 0.87233 0.87191 0.90007 0.90768 0.88421 0.91890 0.86569 0.91301 0.91568 0.92173 0.91660 0.92850 0.92537 0.94374 0.93336 0.93856 0.94401 0.96122 0.87507 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.24 37.16 0.38 -0.43 16 2 C 0.13 0.76 7.24 -4.04 -0.03 0.73 16 3 N -0.15 -1.59 3.94 -10.61 -0.04 -1.63 16 4 N -0.29 -3.67 12.01 33.92 0.41 -3.27 16 5 C 0.06 0.86 7.39 -81.87 -0.61 0.25 16 6 C -0.07 -0.84 9.95 36.01 0.36 -0.48 16 7 C -0.03 -0.52 6.89 -82.68 -0.57 -1.09 16 8 C 0.60 10.38 7.70 -12.35 -0.10 10.28 16 9 O -0.51 -10.52 14.72 5.32 0.08 -10.44 16 10 N -0.59 -9.39 2.60 -174.33 -0.45 -9.84 16 11 C 0.09 1.10 6.13 -3.70 -0.02 1.07 16 12 C -0.13 -1.56 5.92 -26.54 -0.16 -1.72 16 13 C -0.10 -1.39 4.65 -27.11 -0.13 -1.52 16 14 C -0.09 -1.51 0.56 -153.97 -0.09 -1.59 16 15 C -0.13 -2.54 4.92 -25.13 -0.12 -2.66 16 16 C 0.18 4.56 4.95 -2.95 -0.01 4.55 16 17 N -0.60 -15.75 3.39 -170.31 -0.58 -16.33 16 18 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.99 10.31 55.49 0.57 -27.42 16 22 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.15 3.09 6.15 -2.88 -0.02 3.07 16 27 C 0.14 2.42 5.08 -4.11 -0.02 2.40 16 28 N -0.25 -3.14 8.64 33.42 0.29 -2.85 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.35 6.91 -51.93 -0.36 0.99 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.12 1.40 4.15 -66.89 -0.28 1.12 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16 44 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 45 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 46 H 0.05 1.41 7.38 -51.92 -0.38 1.02 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.04 0.76 8.01 -51.93 -0.42 0.35 16 49 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 50 H 0.11 2.37 6.61 -51.93 -0.34 2.02 16 51 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -34.57 395.44 -8.57 -43.14 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.40 Total: -1.00 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.38 Total: 5.90 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.20 Total: -61.34 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.57 -8.57 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054250412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.329 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds