Wall clock time and date at job start Wed Apr 1 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47389 * 2 1 4 4 N 1.28518 * 124.44137 * 270.02499 * 3 2 1 5 5 C 1.31133 * 109.05725 * 179.68688 * 4 3 2 6 6 C 1.50709 * 127.11086 * 180.28984 * 5 4 3 7 7 C 1.40919 * 105.77874 * 0.43150 * 5 4 3 8 8 C 1.47798 * 127.23960 * 179.83317 * 7 5 4 9 9 O 1.21555 * 119.99732 * 353.77102 * 8 7 5 10 10 N 1.34773 * 119.99873 * 173.76819 * 8 7 5 11 11 C 1.46946 * 120.72313 * 353.24531 * 10 8 7 12 12 C 1.53189 * 108.90106 * 234.31012 * 11 10 8 13 13 C 1.53181 * 109.27527 * 304.60694 * 12 11 10 14 14 C 1.52066 * 109.72989 * 59.93459 * 13 12 11 15 15 C 1.54579 * 110.67793 * 64.30770 * 14 13 12 16 16 C 1.54471 * 102.76031 * 152.61258 * 15 14 13 17 17 N 1.47085 * 107.42588 * 338.69828 * 16 15 14 18 18 C 1.36937 * 125.62789 * 178.94543 * 17 16 15 19 19 H 1.08001 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00222 * 359.97257 * 18 17 16 21 21 N 1.31623 * 120.00161 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47395 * 90.00031 * 22 20 18 24 24 H 1.48499 * 109.47496 * 210.00278 * 22 20 18 25 25 H 1.48499 * 109.46905 * 330.00012 * 22 20 18 26 26 C 1.47573 * 108.74300 * 358.92593 * 17 16 15 27 27 C 1.47106 * 120.71621 * 173.22626 * 10 8 7 28 28 N 1.28583 * 124.44701 * 89.99195 * 3 2 1 29 29 H 1.08997 * 109.46997 * 60.00230 * 1 2 3 30 30 H 1.09009 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47297 * 299.99870 * 1 2 3 32 32 H 1.09000 * 109.46938 * 239.99440 * 2 1 3 33 33 H 1.09007 * 109.46800 * 119.99759 * 2 1 3 34 34 H 1.08997 * 109.46911 * 270.17101 * 6 5 4 35 35 H 1.09001 * 109.46932 * 30.16863 * 6 5 4 36 36 H 1.08994 * 109.46663 * 150.17325 * 6 5 4 37 37 H 1.08997 * 109.56368 * 114.47922 * 11 10 8 38 38 H 1.09000 * 109.65407 * 354.18871 * 11 10 8 39 39 H 1.09010 * 109.49865 * 184.67360 * 12 11 10 40 40 H 1.08996 * 109.53786 * 64.57415 * 12 11 10 41 41 H 1.08991 * 109.43082 * 299.85212 * 13 12 11 42 42 H 1.09005 * 109.38127 * 179.97438 * 13 12 11 43 43 H 1.09002 * 110.71045 * 34.34594 * 15 14 13 44 44 H 1.08998 * 110.86363 * 270.95704 * 15 14 13 45 45 H 1.09000 * 109.88051 * 219.19254 * 16 15 14 46 46 H 1.09010 * 109.87766 * 98.19374 * 16 15 14 47 47 H 0.96993 * 120.00475 * 179.97438 * 21 20 18 48 48 H 1.08994 * 110.37801 * 142.11696 * 26 17 16 49 49 H 1.09004 * 110.37241 * 264.47259 * 26 17 16 50 50 H 1.08995 * 109.57011 * 7.96806 * 27 10 8 51 51 H 1.09003 * 109.56173 * 247.61584 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2603 2.0666 -1.0599 5 6 2.6755 3.2608 -0.7120 6 6 3.0656 4.3909 -1.6296 7 6 2.6848 3.2678 0.6971 8 6 3.0790 4.3830 1.5834 9 8 3.5523 5.3975 1.1098 10 7 2.9135 4.2751 2.9165 11 6 2.2098 3.1219 3.4948 12 6 1.0723 3.6305 4.3858 13 6 1.6422 4.5901 5.4350 14 6 2.3108 5.7681 4.7439 15 6 1.2731 6.5989 3.9550 16 6 1.8998 8.0108 3.9490 17 7 2.8559 8.0731 5.0650 18 6 3.6355 9.1514 5.3883 19 1 4.3090 9.0977 6.2308 20 6 3.5601 10.3137 4.6330 21 7 2.7390 10.3794 3.6064 22 14 4.6230 11.7850 5.0744 23 1 5.9173 11.6952 4.3521 24 1 3.9240 13.0356 4.6840 25 1 4.8727 11.7939 6.5382 26 6 2.8360 6.7817 5.7790 27 6 3.4338 5.3090 3.8244 28 7 2.2607 2.0669 1.0604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.1298 4.3247 -1.8555 35 1 2.4929 4.3222 -2.5545 36 1 2.8561 5.3432 -1.1424 37 1 2.9052 2.5318 4.0916 38 1 1.7995 2.5045 2.6957 39 1 0.5961 2.7865 4.8851 40 1 0.3370 4.1541 3.7749 41 1 2.3755 4.0647 6.0466 42 1 0.8340 4.9535 6.0698 43 1 0.3125 6.6054 4.4701 44 1 1.1646 6.2206 2.9386 45 1 1.1220 8.7622 4.0849 46 1 2.4193 8.1817 3.0060 47 1 2.6861 11.1917 3.0789 48 1 3.8416 6.5100 6.0999 49 1 2.1638 6.8321 6.6357 50 1 3.7986 6.1556 3.2428 51 1 4.2475 4.8955 4.4203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054250412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:39 Heat of formation + Delta-G solvation = 86.545396 kcal Electronic energy + Delta-G solvation = -32399.348393 eV Core-core repulsion = 28336.547254 eV Total energy + Delta-G solvation = -4062.801139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.78487 -41.54029 -39.66602 -37.37131 -36.07284 -34.97319 -33.97793 -33.21187 -32.41910 -31.50635 -30.38559 -29.13754 -27.62684 -27.09241 -25.43926 -25.25394 -23.48152 -23.04278 -22.12565 -22.04518 -21.01724 -19.63260 -18.58966 -18.37190 -18.07447 -17.65108 -17.01410 -16.77128 -16.47714 -15.87139 -15.68166 -15.48495 -15.18025 -15.04552 -14.80612 -14.55006 -14.30736 -14.08128 -14.00225 -13.81416 -13.75332 -13.51981 -13.41619 -13.32003 -13.00698 -12.96304 -12.76382 -12.60498 -12.57971 -12.27413 -12.15375 -12.04265 -11.95613 -11.82471 -11.63451 -11.54982 -11.38178 -11.25819 -11.07989 -10.87095 -10.68529 -10.29974 -9.61235 -8.86383 -7.81413 -5.17290 0.15473 0.79148 1.15416 1.44081 1.47584 1.55612 1.88455 2.10936 2.50993 2.74782 3.36282 3.49489 3.62837 3.67936 3.74843 3.87640 3.93969 3.96563 3.98463 4.15703 4.22866 4.27380 4.35458 4.39719 4.48928 4.56780 4.60930 4.69488 4.69741 4.73572 4.77925 4.80386 4.85615 4.90551 4.92515 4.99053 5.01646 5.07954 5.12061 5.19384 5.23170 5.27827 5.44237 5.47742 5.49805 5.52134 5.67607 5.74620 5.79412 6.21619 6.33097 6.94700 7.10890 7.11733 7.80764 8.46112 9.28998 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003037 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.576354 B = 9217.676441 C =10345.690431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.129 5.129 4 N -0.293 5.293 5 C 0.047 3.953 6 C -0.066 4.066 7 C -0.063 4.063 8 C 0.595 3.405 9 O -0.563 6.563 10 N -0.590 5.590 11 C 0.085 3.915 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.070 4.070 15 C -0.110 4.110 16 C 0.193 3.807 17 N -0.624 5.624 18 C -0.238 4.238 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.143 3.857 27 C 0.142 3.858 28 N -0.237 5.237 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.050 0.950 45 H -0.001 1.001 46 H -0.003 1.003 47 H 0.243 0.757 48 H 0.047 0.953 49 H 0.036 0.964 50 H 0.053 0.947 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -28.818 -4.335 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.034 5.034 4 N -0.136 5.136 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.223 4.223 8 C 0.381 3.619 9 O -0.440 6.440 10 N -0.321 5.321 11 C -0.037 4.037 12 C -0.162 4.162 13 C -0.134 4.134 14 C -0.072 4.072 15 C -0.148 4.148 16 C 0.068 3.932 17 N -0.351 5.351 18 C -0.367 4.367 19 H 0.104 0.896 20 C -0.265 4.265 21 N -0.603 5.603 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.188 1.188 26 C 0.018 3.982 27 C 0.019 3.981 28 N -0.086 5.086 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.015 0.985 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.747 -29.382 -4.630 30.295 hybrid contribution 0.835 2.558 -0.177 2.697 sum -4.913 -26.823 -4.806 27.690 Atomic orbital electron populations 1.22188 0.91934 1.05664 1.02651 1.22716 0.96947 0.71872 1.08388 1.48944 1.41473 1.14295 0.98646 1.73933 1.19037 1.04751 1.15839 1.23459 1.00907 0.94503 0.92679 1.20200 1.02757 0.92365 0.97141 1.22679 1.11333 0.93855 0.94406 1.17104 0.78339 0.84541 0.81936 1.90830 1.47082 1.30694 1.75363 1.48018 1.55589 1.24152 1.04380 1.22632 0.94708 0.86745 0.99595 1.21915 0.97169 1.00041 0.97123 1.21330 1.00451 0.94059 0.97519 1.21374 0.94997 0.95576 0.95258 1.22596 0.98052 0.95090 0.99064 1.20782 0.90368 0.92358 0.89713 1.44800 1.46320 1.11498 1.32452 1.19487 1.15665 0.90976 1.10559 0.89564 1.25709 1.01412 1.01209 0.98145 1.70244 1.41462 1.27346 1.21220 0.85072 0.77612 0.78485 0.78150 1.21619 1.22274 1.18825 1.21676 0.98636 0.84332 0.93567 1.21230 0.95520 0.90241 0.91095 1.74129 1.15358 1.03882 1.15255 0.92793 0.86303 0.92224 0.85131 0.84575 0.89395 0.88703 0.90958 0.89584 0.85927 0.87237 0.93080 0.89647 0.90674 0.91000 0.93137 0.98276 0.98465 0.94747 0.93445 0.94639 0.92854 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 71.98 0.74 -0.28 16 2 C 0.12 0.90 7.24 86.38 0.63 1.52 16 3 N -0.13 -2.47 3.94 -187.49 -0.74 -3.21 16 4 N -0.29 -6.96 12.01 -46.58 -0.56 -7.52 16 5 C 0.05 1.30 7.39 43.32 0.32 1.62 16 6 C -0.07 -1.69 9.95 71.24 0.71 -0.98 16 7 C -0.06 -1.87 6.89 42.24 0.29 -1.58 16 8 C 0.59 21.38 7.70 86.77 0.67 22.05 16 9 O -0.56 -25.12 14.72 -3.89 -0.06 -25.17 16 10 N -0.59 -18.52 2.60 -823.73 -2.14 -20.66 16 11 C 0.09 1.85 6.13 86.36 0.53 2.38 16 12 C -0.12 -2.45 5.92 30.72 0.18 -2.27 16 13 C -0.10 -2.23 4.65 30.35 0.14 -2.09 16 14 C -0.07 -2.41 0.56 -51.83 -0.03 -2.44 16 15 C -0.11 -4.47 4.92 31.63 0.16 -4.32 16 16 C 0.19 10.53 4.95 86.77 0.43 10.96 16 17 N -0.62 -33.70 3.39 -692.73 -2.35 -36.05 16 18 C -0.24 -13.94 10.28 84.03 0.86 -13.08 16 19 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 20 C -0.07 -4.36 5.49 84.86 0.47 -3.90 16 21 N -0.95 -61.79 10.31 21.65 0.22 -61.57 16 22 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.14 5.84 6.15 86.55 0.53 6.37 16 27 C 0.14 5.11 5.08 86.01 0.44 5.55 16 28 N -0.24 -5.45 8.64 -48.17 -0.42 -5.87 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.22 6.91 -2.39 -0.02 2.21 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.12 2.58 4.15 -21.75 -0.09 2.49 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.19 7.42 -2.39 -0.02 1.17 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 43 H 0.07 2.66 7.99 -2.39 -0.02 2.64 16 44 H 0.05 2.11 7.70 -2.39 -0.02 2.10 16 45 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 46 H 0.00 -0.19 7.38 -2.38 -0.02 -0.21 16 47 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.05 1.85 8.01 -2.39 -0.02 1.83 16 49 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 50 H 0.05 2.53 6.61 -2.39 -0.02 2.51 16 51 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 Total: -1.00 -82.91 395.44 3.89 -79.01 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.84 Total: 11.12 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 7.06 Total: 19.51 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -5.98 Total: -134.88 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -82.91 3.89 -79.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054250412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.558 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds