Wall clock time and date at job start Wed Apr 1 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46851 * 111.00147 * 2 1 4 4 C 1.53034 * 109.52364 * 185.84175 * 3 2 1 5 5 C 1.53128 * 109.27610 * 300.82110 * 4 3 2 6 6 C 1.50702 * 109.51811 * 177.56052 * 5 4 3 7 7 O 1.21279 * 120.00343 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99604 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99861 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.40071 * 126.12777 * 259.87623 * 10 9 8 12 12 N 1.31008 * 108.25933 * 179.83696 * 11 10 9 13 13 N 1.39752 * 108.17587 * 0.36260 * 12 11 10 14 14 C 1.34642 * 126.12436 * 80.00440 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68600 * 14 10 9 16 16 N 1.47502 * 107.00120 * 169.72279 * 15 14 10 17 17 C 1.36940 * 121.01057 * 222.89486 * 16 15 14 18 18 H 1.08000 * 119.99632 * 155.91392 * 17 16 15 19 19 C 1.38810 * 120.00291 * 335.92287 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.44867 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45215 * 19 17 16 22 22 H 1.48499 * 109.46896 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46773 * 119.99548 * 21 19 17 24 24 H 1.48494 * 109.47008 * 239.99575 * 21 19 17 25 25 C 1.47090 * 117.97851 * 42.91837 * 16 15 14 26 26 C 1.46544 * 127.31949 * 179.45101 * 13 12 11 27 27 C 1.53119 * 109.15874 * 57.65901 * 5 4 3 28 28 C 1.46847 * 110.99943 * 124.21268 * 2 1 3 29 29 H 1.08996 * 109.47160 * 59.99329 * 1 2 3 30 30 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47113 * 299.99725 * 1 2 3 32 32 H 1.09003 * 109.45606 * 65.82608 * 3 2 1 33 33 H 1.08996 * 109.45435 * 305.85417 * 3 2 1 34 34 H 1.09000 * 109.50252 * 180.88238 * 4 3 2 35 35 H 1.09000 * 109.53523 * 60.78079 * 4 3 2 36 36 H 1.08996 * 109.52217 * 297.68302 * 5 4 3 37 37 H 0.96995 * 120.00250 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47393 * 60.00295 * 9 8 6 39 39 H 1.09004 * 109.47674 * 300.00146 * 9 8 6 40 40 H 1.08007 * 125.86781 * 0.03833 * 11 10 9 41 41 H 1.09005 * 109.94596 * 289.08950 * 15 14 10 42 42 H 1.08995 * 109.95446 * 50.34958 * 15 14 10 43 43 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.51221 * 56.33698 * 25 16 15 45 45 H 1.08996 * 109.51216 * 176.48957 * 25 16 15 46 46 H 1.09003 * 109.51603 * 41.61815 * 26 13 12 47 47 H 1.09004 * 109.51358 * 281.47209 * 26 13 12 48 48 H 1.08994 * 109.50816 * 62.28434 * 27 5 4 49 49 H 1.09000 * 109.50100 * 182.40136 * 27 5 4 50 50 H 1.08998 * 109.46476 * 294.17319 * 28 2 1 51 51 H 1.09001 * 109.46114 * 54.14453 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 5.6133 0.4463 0.8430 7 8 6.1469 0.9680 -0.1130 8 7 6.3569 -0.2146 1.7523 9 6 7.8097 -0.3033 1.5855 10 6 8.3995 -1.0890 2.7281 11 6 9.0287 -0.5549 3.8598 12 7 9.4048 -1.5477 4.6273 13 7 9.0352 -2.7435 4.0057 14 6 8.4182 -2.4304 2.8429 15 6 7.8600 -3.4520 1.8806 16 7 8.3453 -4.7724 2.3240 17 6 8.8050 -5.6945 1.4219 18 1 9.4945 -6.4629 1.7389 19 6 8.3848 -5.6415 0.1000 20 7 7.3329 -4.9215 -0.2278 21 14 9.3122 -6.5921 -1.2137 22 1 10.4490 -7.3165 -0.5908 23 1 8.3964 -7.5675 -1.8582 24 1 9.8285 -5.6475 -2.2365 25 6 8.3201 -5.0689 3.7645 26 6 9.2634 -4.1062 4.4941 27 6 3.5181 -0.8716 1.0207 28 6 1.9952 -0.7708 1.1337 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.7325 1.8608 0.9377 33 1 1.5634 1.9256 -0.8330 34 1 3.9099 2.3512 -0.1310 35 1 3.7819 0.8571 -1.0907 36 1 3.8897 1.0360 1.9559 37 1 5.9303 -0.6316 2.5171 38 1 8.2361 0.6998 1.5755 39 1 8.0376 -0.8043 0.6446 40 1 9.1753 0.4952 4.0660 41 1 6.7704 -3.4291 1.9046 42 1 8.2151 -3.2451 0.8711 43 1 7.0390 -4.8848 -1.1515 44 1 7.3062 -4.9430 4.1444 45 1 8.6471 -6.0952 3.9307 46 1 9.0673 -4.1467 5.5656 47 1 10.2971 -4.3937 4.3014 48 1 3.7813 -1.3837 0.0952 49 1 3.9099 -1.4304 1.8706 50 1 1.7325 -0.2710 2.0660 51 1 1.5633 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069872348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:11 Heat of formation + Delta-G solvation = 64.866286 kcal Electronic energy + Delta-G solvation = -31584.833638 eV Core-core repulsion = 27521.092423 eV Total energy + Delta-G solvation = -4063.741216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00548 -39.98441 -38.21168 -36.31938 -34.75907 -33.65349 -32.96297 -31.31125 -30.86506 -30.22530 -28.92227 -27.29253 -26.00339 -24.85045 -23.58808 -23.27595 -23.00050 -21.76808 -20.53234 -20.15575 -19.53664 -18.40726 -17.15795 -16.72873 -16.03516 -16.01352 -15.47143 -15.26488 -15.13476 -14.94818 -14.63108 -14.61196 -13.91105 -13.83358 -13.67004 -13.44586 -13.43629 -13.22021 -13.05871 -12.61668 -12.52424 -12.45699 -12.33409 -11.77859 -11.70604 -11.60749 -11.31826 -11.29657 -11.21268 -10.99796 -10.88741 -10.73414 -10.70134 -10.51668 -10.18466 -10.17807 -10.08544 -9.52391 -8.91688 -8.69693 -8.55952 -8.48231 -7.92566 -7.09001 -6.01749 -3.44546 2.41430 2.91045 2.96082 3.01153 3.29079 3.37510 3.38976 3.77135 3.78576 4.31320 4.60677 4.70914 4.84849 4.95145 5.00256 5.05647 5.15665 5.18200 5.20453 5.25405 5.35630 5.37184 5.44761 5.47585 5.52248 5.54926 5.60113 5.66538 5.67511 5.71907 5.72140 5.85782 5.86602 5.99298 6.16620 6.20996 6.21462 6.35083 6.37957 6.40175 6.54590 6.76633 6.90482 6.90677 6.93176 7.07944 7.14246 7.57051 7.60251 7.84116 8.08727 8.22606 8.52791 8.91660 9.54008 10.06404 11.09125 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003386 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.080017 B = 8267.557679 C = 9860.818974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.096 4.096 5 C -0.107 4.107 6 C 0.518 3.482 7 O -0.545 6.545 8 N -0.718 5.718 9 C 0.209 3.791 10 C -0.288 4.288 11 C 0.056 3.944 12 N -0.318 5.318 13 N -0.358 5.358 14 C 0.119 3.881 15 C 0.232 3.768 16 N -0.596 5.596 17 C -0.265 4.265 18 H 0.074 0.926 19 C 0.010 3.990 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.286 1.286 25 C 0.129 3.871 26 C 0.113 3.887 27 C -0.109 4.109 28 C 0.059 3.941 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.175 0.825 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.259 0.741 44 H 0.036 0.964 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.033 0.967 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 9.865 6.067 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.134 4.134 5 C -0.128 4.128 6 C 0.303 3.697 7 O -0.423 6.423 8 N -0.369 5.369 9 C 0.086 3.914 10 C -0.300 4.300 11 C -0.131 4.131 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.012 4.012 15 C 0.105 3.895 16 N -0.319 5.319 17 C -0.394 4.394 18 H 0.091 0.909 19 C -0.190 4.190 20 N -0.545 5.545 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.212 1.212 25 C 0.001 3.999 26 C -0.010 4.010 27 C -0.147 4.147 28 C -0.069 4.069 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.232 0.768 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.192 0.808 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.793 9.506 5.945 14.248 hybrid contribution -0.330 -0.042 -0.145 0.363 sum -9.123 9.463 5.800 14.368 Atomic orbital electron populations 1.22343 0.87363 1.02116 1.00423 1.61904 1.07432 1.13880 1.43674 1.22129 0.95683 0.88981 1.00329 1.21398 0.92948 1.00357 0.98712 1.21376 0.91987 0.98531 1.00921 1.20495 0.88930 0.77994 0.82239 1.90680 1.73947 1.47020 1.30644 1.46218 1.08206 1.55467 1.26999 1.19295 0.78390 0.98286 0.95454 1.19441 1.16777 0.92192 1.01594 1.23669 0.98315 0.98420 0.92707 1.77167 1.24520 0.89835 1.22316 1.48496 1.44239 1.05527 1.15651 1.22590 0.93411 0.96120 0.89123 1.19912 0.96191 0.79127 0.94275 1.44211 1.74846 1.12493 1.00345 1.19189 1.21062 1.09559 0.89550 0.90865 1.25026 0.96186 0.99265 0.98522 1.69938 1.22971 1.43419 1.18140 0.86155 0.79288 0.79209 0.81701 1.20199 1.21430 1.21231 1.21270 0.95931 0.96638 0.86085 1.22549 1.02287 0.77244 0.98940 1.21591 0.94155 0.94846 1.04098 1.22088 0.95329 0.98440 0.91067 0.91410 0.91313 0.95908 0.95061 0.90545 0.90904 0.89993 0.89307 0.76803 0.91476 0.90905 0.80808 0.92585 0.87325 0.93051 0.94647 0.89735 0.90225 0.90614 0.89811 0.90691 0.94916 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.06 0.58 0.79 16 2 N -0.54 -5.78 4.91 -242.96 -1.19 -6.97 16 3 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 4 C -0.10 -1.12 4.68 -26.65 -0.12 -1.24 16 5 C -0.11 -1.25 2.59 -91.64 -0.24 -1.49 16 6 C 0.52 7.77 7.16 -10.98 -0.08 7.69 16 7 O -0.55 -10.19 15.98 5.56 0.09 -10.10 16 8 N -0.72 -10.31 5.45 -61.47 -0.34 -10.65 16 9 C 0.21 3.37 5.95 -5.20 -0.03 3.33 16 10 C -0.29 -4.93 5.46 -105.21 -0.57 -5.51 16 11 C 0.06 0.90 11.97 -17.22 -0.21 0.69 16 12 N -0.32 -5.82 12.61 30.70 0.39 -5.44 16 13 N -0.36 -6.78 4.03 -56.94 -0.23 -7.01 16 14 C 0.12 2.33 6.71 -82.17 -0.55 1.78 16 15 C 0.23 5.13 5.11 -4.48 -0.02 5.11 16 16 N -0.60 -13.69 3.01 -172.96 -0.52 -14.21 16 17 C -0.27 -6.72 9.66 -15.06 -0.15 -6.86 16 18 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 19 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 20 N -0.90 -24.28 11.07 55.49 0.61 -23.66 16 21 Si 0.91 20.76 29.58 -169.99 -5.03 15.73 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.38 6.49 -3.59 -0.02 2.35 16 26 C 0.11 1.91 7.44 -3.88 -0.03 1.88 16 27 C -0.11 -1.27 5.26 -26.65 -0.14 -1.41 16 28 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 5.15 7.95 -40.82 -0.32 4.82 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -30.44 404.43 -10.46 -40.89 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.62 Total: 6.93 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.72 Total: 8.40 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.28 Total: -67.94 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.44 -10.46 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.760 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds