Wall clock time and date at job start Wed Apr 1 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46851 * 111.00147 * 2 1 4 4 C 1.53034 * 109.52364 * 185.84175 * 3 2 1 5 5 C 1.53128 * 109.27610 * 300.82110 * 4 3 2 6 6 C 1.50702 * 109.51811 * 177.56052 * 5 4 3 7 7 O 1.21279 * 120.00343 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99604 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99861 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.40071 * 126.12777 * 259.87623 * 10 9 8 12 12 N 1.31008 * 108.25933 * 179.83696 * 11 10 9 13 13 N 1.39752 * 108.17587 * 0.36260 * 12 11 10 14 14 C 1.34642 * 126.12436 * 80.00440 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68600 * 14 10 9 16 16 N 1.47502 * 107.00120 * 169.72279 * 15 14 10 17 17 C 1.36940 * 121.01057 * 222.89486 * 16 15 14 18 18 H 1.08000 * 119.99632 * 155.91392 * 17 16 15 19 19 C 1.38810 * 120.00291 * 335.92287 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.44867 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45215 * 19 17 16 22 22 H 1.48499 * 109.46896 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46773 * 119.99548 * 21 19 17 24 24 H 1.48494 * 109.47008 * 239.99575 * 21 19 17 25 25 C 1.47090 * 117.97851 * 42.91837 * 16 15 14 26 26 C 1.46544 * 127.31949 * 179.45101 * 13 12 11 27 27 C 1.53119 * 109.15874 * 57.65901 * 5 4 3 28 28 C 1.46847 * 110.99943 * 124.21268 * 2 1 3 29 29 H 1.08996 * 109.47160 * 59.99329 * 1 2 3 30 30 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47113 * 299.99725 * 1 2 3 32 32 H 1.09003 * 109.45606 * 65.82608 * 3 2 1 33 33 H 1.08996 * 109.45435 * 305.85417 * 3 2 1 34 34 H 1.09000 * 109.50252 * 180.88238 * 4 3 2 35 35 H 1.09000 * 109.53523 * 60.78079 * 4 3 2 36 36 H 1.08996 * 109.52217 * 297.68302 * 5 4 3 37 37 H 0.96995 * 120.00250 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47393 * 60.00295 * 9 8 6 39 39 H 1.09004 * 109.47674 * 300.00146 * 9 8 6 40 40 H 1.08007 * 125.86781 * 0.03833 * 11 10 9 41 41 H 1.09005 * 109.94596 * 289.08950 * 15 14 10 42 42 H 1.08995 * 109.95446 * 50.34958 * 15 14 10 43 43 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.51221 * 56.33698 * 25 16 15 45 45 H 1.08996 * 109.51216 * 176.48957 * 25 16 15 46 46 H 1.09003 * 109.51603 * 41.61815 * 26 13 12 47 47 H 1.09004 * 109.51358 * 281.47209 * 26 13 12 48 48 H 1.08994 * 109.50816 * 62.28434 * 27 5 4 49 49 H 1.09000 * 109.50100 * 182.40136 * 27 5 4 50 50 H 1.08998 * 109.46476 * 294.17319 * 28 2 1 51 51 H 1.09001 * 109.46114 * 54.14453 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 5.6133 0.4463 0.8430 7 8 6.1469 0.9680 -0.1130 8 7 6.3569 -0.2146 1.7523 9 6 7.8097 -0.3033 1.5855 10 6 8.3995 -1.0890 2.7281 11 6 9.0287 -0.5549 3.8598 12 7 9.4048 -1.5477 4.6273 13 7 9.0352 -2.7435 4.0057 14 6 8.4182 -2.4304 2.8429 15 6 7.8600 -3.4520 1.8806 16 7 8.3453 -4.7724 2.3240 17 6 8.8050 -5.6945 1.4219 18 1 9.4945 -6.4629 1.7389 19 6 8.3848 -5.6415 0.1000 20 7 7.3329 -4.9215 -0.2278 21 14 9.3122 -6.5921 -1.2137 22 1 10.4490 -7.3165 -0.5908 23 1 8.3964 -7.5675 -1.8582 24 1 9.8285 -5.6475 -2.2365 25 6 8.3201 -5.0689 3.7645 26 6 9.2634 -4.1062 4.4941 27 6 3.5181 -0.8716 1.0207 28 6 1.9952 -0.7708 1.1337 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.7325 1.8608 0.9377 33 1 1.5634 1.9256 -0.8330 34 1 3.9099 2.3512 -0.1310 35 1 3.7819 0.8571 -1.0907 36 1 3.8897 1.0360 1.9559 37 1 5.9303 -0.6316 2.5171 38 1 8.2361 0.6998 1.5755 39 1 8.0376 -0.8043 0.6446 40 1 9.1753 0.4952 4.0660 41 1 6.7704 -3.4291 1.9046 42 1 8.2151 -3.2451 0.8711 43 1 7.0390 -4.8848 -1.1515 44 1 7.3062 -4.9430 4.1444 45 1 8.6471 -6.0952 3.9307 46 1 9.0673 -4.1467 5.5656 47 1 10.2971 -4.3937 4.3014 48 1 3.7813 -1.3837 0.0952 49 1 3.9099 -1.4304 1.8706 50 1 1.7325 -0.2710 2.0660 51 1 1.5633 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069872348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:09 Heat of formation + Delta-G solvation = 44.210649 kcal Electronic energy + Delta-G solvation = -31585.729334 eV Core-core repulsion = 27521.092423 eV Total energy + Delta-G solvation = -4064.636911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.43436 -41.10619 -39.20443 -37.96650 -36.12036 -34.72361 -34.48078 -32.87279 -31.85490 -31.75804 -30.33017 -28.30653 -27.63362 -26.20151 -25.14494 -24.21612 -23.97917 -23.28276 -21.62294 -21.56456 -20.58823 -19.93637 -18.54167 -18.36744 -17.48389 -17.15800 -16.69321 -16.66928 -16.25881 -16.05437 -15.98233 -15.51815 -15.44629 -15.33513 -14.97815 -14.86203 -14.76098 -14.45090 -14.23539 -13.95293 -13.71688 -13.36713 -13.35368 -13.27878 -13.05798 -12.95409 -12.76518 -12.62708 -12.54148 -12.32353 -12.22893 -12.12215 -12.03160 -11.88894 -11.66016 -11.62158 -11.39491 -10.80950 -10.75119 -10.06593 -9.99589 -9.38255 -9.21886 -8.95004 -7.98861 -5.42257 0.93204 1.44140 1.48151 1.55776 1.59382 1.65506 1.71722 2.44353 2.55725 3.02550 3.20504 3.43335 3.60774 3.64931 3.78873 3.82916 3.88912 4.13204 4.18952 4.19374 4.23476 4.29312 4.37236 4.38853 4.47186 4.48120 4.57911 4.59773 4.74134 4.75001 4.78347 4.79903 4.88191 4.90836 4.93445 4.97493 5.02688 5.06553 5.12083 5.21559 5.24533 5.37203 5.37738 5.51854 5.58791 5.75761 6.09284 6.16260 6.18515 6.20185 6.64134 6.80382 6.99142 7.31576 7.65601 8.16464 9.10203 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003386 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.080017 B = 8267.557679 C = 9860.818974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.568 5.568 3 C 0.063 3.937 4 C -0.094 4.094 5 C -0.097 4.097 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.710 5.710 9 C 0.216 3.784 10 C -0.274 4.274 11 C 0.067 3.933 12 N -0.326 5.326 13 N -0.366 5.366 14 C 0.096 3.904 15 C 0.251 3.749 16 N -0.616 5.616 17 C -0.267 4.267 18 H 0.079 0.921 19 C -0.041 4.041 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.128 3.872 26 C 0.117 3.883 27 C -0.105 4.105 28 C 0.063 3.937 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.120 0.880 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.215 0.785 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 10.836 8.474 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.293 5.293 3 C -0.065 4.065 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.360 5.360 9 C 0.092 3.908 10 C -0.287 4.287 11 C -0.119 4.119 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.036 4.036 15 C 0.124 3.876 16 N -0.339 5.339 17 C -0.396 4.396 18 H 0.097 0.903 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.217 1.217 24 H -0.223 1.223 25 C 0.002 3.998 26 C -0.006 4.006 27 C -0.143 4.143 28 C -0.065 4.065 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.243 0.757 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.231 0.769 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.117 0.883 46 H 0.130 0.870 47 H 0.094 0.906 48 H 0.067 0.933 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.210 10.448 8.410 16.270 hybrid contribution -0.174 -0.331 -0.856 0.934 sum -9.384 10.117 7.555 15.732 Atomic orbital electron populations 1.22366 0.85853 1.02552 1.01303 1.61874 1.08933 1.14358 1.44159 1.22082 0.93865 0.88949 1.01610 1.21355 0.94733 0.99995 0.97103 1.21379 0.89131 0.98848 1.02423 1.21133 0.90342 0.76998 0.81363 1.90659 1.74977 1.48835 1.32193 1.46111 1.07559 1.55134 1.27236 1.19133 0.79549 0.98483 0.93674 1.19531 1.15883 0.91398 1.01849 1.24240 0.96550 0.99847 0.91303 1.77164 1.24850 0.89886 1.22716 1.48681 1.44335 1.06389 1.15402 1.22211 0.95379 0.96384 0.89608 1.19327 0.94959 0.80076 0.93228 1.44440 1.74955 1.12440 1.02086 1.19510 1.20474 1.09474 0.90185 0.90326 1.25684 0.97056 1.00636 1.00317 1.70084 1.24438 1.45151 1.17702 0.85282 0.78454 0.77844 0.79328 1.18871 1.21666 1.22315 1.21437 0.96817 0.98103 0.83486 1.22539 1.01598 0.76079 1.00358 1.21530 0.95820 0.94472 1.02470 1.22037 0.93672 0.98869 0.91906 0.90794 0.91168 0.94694 0.93270 0.89679 0.90630 0.93170 0.86172 0.75722 0.89901 0.94224 0.76876 0.94602 0.91235 0.93914 0.94069 0.88277 0.86951 0.90607 0.93323 0.90196 0.92969 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.63 16 2 N -0.57 -11.37 4.91 -922.59 -4.53 -15.90 16 3 C 0.06 1.13 5.46 86.32 0.47 1.60 16 4 C -0.09 -2.16 4.68 30.65 0.14 -2.02 16 5 C -0.10 -2.20 2.59 -11.46 -0.03 -2.23 16 6 C 0.51 15.65 7.16 87.66 0.63 16.28 16 7 O -0.59 -22.67 15.98 -3.03 -0.05 -22.72 16 8 N -0.71 -20.40 5.45 -466.79 -2.55 -22.94 16 9 C 0.22 6.99 5.95 85.63 0.51 7.50 16 10 C -0.27 -9.17 5.46 -20.24 -0.11 -9.28 16 11 C 0.07 1.98 11.97 85.26 1.02 3.00 16 12 N -0.33 -11.06 12.61 -56.79 -0.72 -11.78 16 13 N -0.37 -13.31 4.03 -334.04 -1.35 -14.65 16 14 C 0.10 3.72 6.71 41.30 0.28 4.00 16 15 C 0.25 11.55 5.11 85.55 0.44 11.99 16 16 N -0.62 -28.60 3.01 -701.13 -2.11 -30.71 16 17 C -0.27 -13.68 9.66 84.03 0.81 -12.87 16 18 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 19 C -0.04 -2.16 5.00 84.86 0.42 -1.73 16 20 N -0.93 -52.29 11.07 21.65 0.24 -52.05 16 21 Si 0.96 43.58 29.58 68.60 2.03 45.61 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.13 4.58 6.49 86.35 0.56 5.14 16 26 C 0.12 3.69 7.44 86.46 0.64 4.34 16 27 C -0.10 -2.45 5.26 30.65 0.16 -2.29 16 28 C 0.06 1.21 5.46 86.33 0.47 1.68 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 36 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 10.25 7.95 -92.71 -0.74 9.52 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.21 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.07 3.73 6.46 -2.39 -0.02 3.72 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 3.20 7.94 -2.39 -0.02 3.18 16 46 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -67.95 404.43 -1.20 -69.16 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.18 Total: 29.25 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 7.65 Total: 26.74 kcal Atomic # 7 Polarization: -137.02 SS G_CDS: -11.01 Total: -148.03 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.95 -1.20 -69.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.366 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds