Wall clock time and date at job start Wed Apr 1 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48673 * 111.11205 * 2 1 4 4 C 1.54386 * 104.67194 * 201.09976 * 3 2 1 5 5 C 1.54259 * 105.06140 * 23.76863 * 4 3 2 6 6 C 1.48560 * 110.99985 * 244.58056 * 2 1 3 7 7 H 1.09003 * 110.41216 * 40.14284 * 6 2 1 8 8 C 1.50703 * 110.41106 * 277.81948 * 6 2 1 9 9 O 1.21278 * 119.99985 * 343.05460 * 8 6 2 10 10 N 1.34779 * 119.99944 * 163.05171 * 8 6 2 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.35309 * 126.04069 * 259.68690 * 12 11 10 14 14 N 1.34950 * 107.74771 * 179.87575 * 13 12 11 15 15 H 0.96997 * 126.03797 * 180.15271 * 14 13 12 16 16 N 1.40091 * 107.92222 * 0.38559 * 14 13 12 17 17 C 1.30840 * 108.20481 * 359.76444 * 16 14 13 18 18 C 1.50701 * 125.89749 * 179.97438 * 17 16 14 19 19 H 1.08993 * 110.63926 * 181.70785 * 18 17 16 20 20 C 1.55159 * 110.71851 * 305.04696 * 18 17 16 21 21 C 1.54911 * 101.58117 * 153.86563 * 20 18 17 22 22 N 1.47427 * 104.83001 * 322.98675 * 21 20 18 23 23 C 1.36934 * 125.64704 * 204.16004 * 22 21 20 24 24 H 1.08004 * 120.00301 * 179.97438 * 23 22 21 25 25 C 1.38814 * 120.00068 * 359.96539 * 23 22 21 26 26 N 1.31614 * 120.00167 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99880 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47219 * 90.00173 * 27 25 23 29 29 H 1.48504 * 109.47216 * 209.99707 * 27 25 23 30 30 H 1.48498 * 109.47471 * 329.99681 * 27 25 23 31 31 C 1.47023 * 108.70209 * 24.13107 * 22 21 20 32 32 H 1.08995 * 109.47376 * 175.41762 * 1 2 3 33 33 H 1.09005 * 109.47161 * 295.42284 * 1 2 3 34 34 H 1.09001 * 109.46813 * 55.41609 * 1 2 3 35 35 H 1.08997 * 110.44541 * 82.25613 * 3 2 1 36 36 H 1.08999 * 110.40018 * 319.91623 * 3 2 1 37 37 H 1.08996 * 110.31969 * 264.86853 * 4 3 2 38 38 H 1.09000 * 110.31917 * 142.66725 * 4 3 2 39 39 H 1.08996 * 110.32300 * 241.10437 * 5 4 3 40 40 H 1.09003 * 110.40886 * 118.93646 * 5 4 3 41 41 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 42 42 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 43 43 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 44 44 H 1.08000 * 126.12641 * 0.02621 * 13 12 11 45 45 H 1.09002 * 111.00209 * 271.93476 * 20 18 17 46 46 H 1.08999 * 111.00711 * 35.79122 * 20 18 17 47 47 H 1.08990 * 110.36641 * 204.15205 * 21 20 18 48 48 H 1.09000 * 110.46120 * 81.87523 * 21 20 18 49 49 H 0.96997 * 120.00550 * 180.02562 * 26 25 23 50 50 H 1.09003 * 109.87894 * 239.51660 * 31 22 21 51 51 H 1.09005 * 109.88279 * 118.35580 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4452 1.2498 -0.5377 5 6 3.4431 -0.0542 -1.3617 6 6 2.0014 -0.5953 -1.2527 7 1 1.4085 -0.2730 -2.1087 8 6 2.0103 -2.0993 -1.1574 9 8 1.9151 -2.6390 -0.0755 10 7 2.1241 -2.8446 -2.2746 11 6 2.1322 -4.3067 -2.1820 12 6 2.2683 -4.8966 -3.5621 13 6 1.2634 -5.4008 -4.3150 14 7 1.7955 -5.8253 -5.4802 15 1 1.3096 -6.2309 -6.2152 16 7 3.1745 -5.5818 -5.4385 17 6 3.4567 -5.0253 -4.2884 18 6 4.8257 -4.5972 -3.8262 19 1 4.7802 -4.1899 -2.8163 20 6 5.8252 -5.7817 -3.9001 21 6 7.1745 -5.0398 -4.0699 22 7 6.8647 -3.8862 -4.9340 23 6 7.7601 -3.2204 -5.7278 24 1 7.4326 -2.3835 -6.3269 25 6 9.0887 -3.6210 -5.7624 26 7 9.4880 -4.6404 -5.0319 27 14 10.3099 -2.7132 -6.8459 28 1 10.9238 -1.6016 -6.0760 29 1 11.3709 -3.6524 -7.2903 30 1 9.6062 -2.1641 -8.0326 31 6 5.4350 -3.5693 -4.8027 32 1 -0.3634 -1.0243 -0.0821 33 1 -0.3634 0.4412 0.9282 34 1 -0.3633 0.5833 -0.8461 35 1 2.0132 1.7917 1.0120 36 1 1.4121 2.0229 -0.6578 37 1 4.1520 1.1745 0.2886 38 1 3.6942 2.0993 -1.1737 39 1 4.1489 -0.7697 -0.9399 40 1 3.6918 0.1534 -2.4024 41 1 2.1998 -2.4130 -3.1399 42 1 1.1998 -4.6475 -1.7319 43 1 2.9718 -4.6270 -1.5651 44 1 0.2217 -5.4519 -4.0347 45 1 5.8120 -6.3622 -2.9777 46 1 5.6167 -6.4156 -4.7620 47 1 7.9061 -5.6886 -4.5514 48 1 7.5471 -4.7007 -3.1034 49 1 10.4164 -4.9201 -5.0557 50 1 4.9474 -3.6468 -5.7745 51 1 5.3136 -2.5621 -4.4040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070399977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:42 Heat of formation + Delta-G solvation = 76.523843 kcal Electronic energy + Delta-G solvation = -31262.196739 eV Core-core repulsion = 27198.961033 eV Total energy + Delta-G solvation = -4063.235706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34822 -40.16866 -38.02185 -37.26802 -34.91745 -33.08727 -32.43795 -31.39183 -30.87982 -29.40916 -29.09341 -27.45930 -26.03693 -25.59358 -24.62929 -22.36785 -21.99369 -21.17463 -20.38545 -20.05474 -19.94331 -18.67944 -18.09631 -17.26466 -16.79067 -16.30643 -15.89355 -15.16833 -14.90171 -14.83850 -14.55280 -14.43294 -14.21840 -14.11457 -14.00121 -13.59991 -13.36880 -12.81762 -12.72288 -12.59739 -12.40521 -12.18466 -12.02994 -11.79178 -11.77732 -11.59827 -11.51409 -11.29817 -11.03393 -10.82524 -10.80696 -10.74480 -10.50304 -10.09027 -10.01524 -9.83421 -9.73909 -9.44974 -9.11977 -9.02545 -8.74796 -8.59265 -8.56872 -6.75906 -5.59061 -3.00205 1.83517 2.58966 2.67040 2.87764 3.26239 3.43480 3.48129 3.50330 3.92246 4.38847 4.42850 4.52855 4.67167 4.70862 4.72487 4.87775 4.92354 5.13328 5.14498 5.14994 5.26481 5.29477 5.40142 5.44654 5.54572 5.57764 5.58765 5.65983 5.71649 5.74412 5.79929 5.89797 5.95732 5.97218 5.98205 6.09134 6.42444 6.45474 6.50598 6.54913 6.64832 6.69780 6.74550 6.77815 6.99315 7.26412 7.55922 7.59889 7.68851 7.79199 7.92794 8.29682 8.43068 9.28267 9.89312 10.54768 11.44885 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.003213 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.898138 B = 8712.750030 C =11042.857291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.490 5.490 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.114 4.114 6 C 0.043 3.957 7 H 0.071 0.929 8 C 0.522 3.478 9 O -0.521 6.521 10 N -0.725 5.725 11 C 0.205 3.795 12 C -0.262 4.262 13 C 0.074 3.926 14 N -0.481 5.481 15 H 0.438 0.562 16 N -0.277 5.277 17 C 0.121 3.879 18 C -0.029 4.029 19 H 0.088 0.912 20 C -0.132 4.132 21 C 0.153 3.847 22 N -0.602 5.602 23 C -0.219 4.219 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.922 5.922 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C 0.152 3.848 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.174 0.826 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.013 0.987 49 H 0.251 0.749 50 H 0.027 0.973 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.641 5.909 5.945 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.215 5.215 3 C -0.095 4.095 4 C -0.161 4.161 5 C -0.152 4.152 6 C -0.069 4.069 7 H 0.089 0.911 8 C 0.306 3.694 9 O -0.396 6.396 10 N -0.378 5.378 11 C 0.081 3.919 12 C -0.274 4.274 13 C -0.075 4.075 14 N -0.187 5.187 15 H 0.282 0.718 16 N -0.099 5.099 17 C -0.048 4.048 18 C -0.049 4.049 19 H 0.106 0.894 20 C -0.172 4.172 21 C 0.028 3.972 22 N -0.328 5.328 23 C -0.348 4.348 24 H 0.094 0.906 25 C -0.207 4.207 26 N -0.571 5.571 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 C 0.025 3.975 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.234 0.766 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.191 0.809 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.124 0.876 48 H 0.031 0.969 49 H 0.062 0.938 50 H 0.045 0.955 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -20.887 4.775 6.048 22.263 hybrid contribution -0.465 1.139 -1.351 1.827 sum -21.352 5.914 4.698 22.649 Atomic orbital electron populations 1.22522 0.87595 1.02222 1.00962 1.65080 1.08281 1.14874 1.33219 1.23184 0.95378 0.89426 1.01542 1.22287 0.96558 0.97274 0.99956 1.22254 0.94013 0.97620 1.01353 1.22655 0.98291 0.92723 0.93218 0.91136 1.20230 0.76443 0.88575 0.84126 1.90699 1.47976 1.73444 1.27481 1.46193 1.75148 1.07042 1.09423 1.19340 1.02172 0.78517 0.91900 1.19956 0.92671 1.14927 0.99885 1.22349 0.99245 0.98511 0.87416 1.46378 1.07012 1.50102 1.15196 0.71827 1.77545 0.89948 1.21712 1.20691 1.22277 0.95927 0.95636 0.90910 1.20757 0.86853 0.98129 0.99206 0.89400 1.23088 0.97369 0.96116 1.00597 1.21933 0.92443 0.89258 0.93593 1.44461 1.02801 1.35038 1.50518 1.19055 0.88622 1.09677 1.17404 0.90608 1.24767 0.97016 0.98722 1.00202 1.69794 1.15578 1.28254 1.43446 0.86091 0.81040 0.78591 0.79887 1.21678 1.21711 1.20784 1.21233 0.86682 0.94214 0.95380 0.91145 0.90906 0.95497 0.89676 0.93704 0.90472 0.90840 0.90023 0.90056 0.76578 0.91263 0.90604 0.80909 0.92331 0.91545 0.87564 0.96908 0.93784 0.95467 0.96276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.45 60.06 0.57 0.71 16 2 N -0.49 -5.35 4.93 -231.62 -1.14 -6.49 16 3 C 0.03 0.28 6.50 -2.12 -0.01 0.26 16 4 C -0.12 -1.08 7.00 -25.35 -0.18 -1.25 16 5 C -0.11 -1.17 6.54 -25.35 -0.17 -1.33 16 6 C 0.04 0.45 2.68 -67.22 -0.18 0.27 16 7 H 0.07 0.61 7.97 -51.93 -0.41 0.20 16 8 C 0.52 6.66 6.71 -10.98 -0.07 6.58 16 9 O -0.52 -8.67 16.58 5.56 0.09 -8.58 16 10 N -0.73 -8.05 5.55 -61.47 -0.34 -8.39 16 11 C 0.20 2.38 5.67 -5.19 -0.03 2.35 16 12 C -0.26 -3.16 5.47 -105.05 -0.57 -3.74 16 13 C 0.07 0.70 11.90 -17.22 -0.20 0.50 16 14 N -0.48 -5.23 7.36 30.44 0.22 -5.01 16 15 H 0.44 3.26 8.96 -182.61 -1.64 1.62 16 16 N -0.28 -4.43 12.33 33.67 0.42 -4.01 16 17 C 0.12 1.88 5.76 -82.40 -0.47 1.40 16 18 C -0.03 -0.51 3.36 -89.94 -0.30 -0.82 16 19 H 0.09 1.51 7.26 -51.93 -0.38 1.13 16 20 C -0.13 -2.65 6.52 -24.58 -0.16 -2.81 16 21 C 0.15 3.79 5.89 -2.53 -0.01 3.77 16 22 N -0.60 -15.69 3.39 -170.07 -0.58 -16.26 16 23 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 24 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 25 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 26 N -0.92 -27.19 10.09 55.49 0.56 -26.63 16 27 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 C 0.15 3.23 6.83 -3.07 -0.02 3.21 16 32 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.20 7.98 -51.93 -0.41 -0.21 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.33 7.91 -51.93 -0.41 -0.08 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.99 7.85 -51.93 -0.41 0.59 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.40 3.96 8.46 -40.82 -0.35 3.61 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 44 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 47 H 0.11 2.97 5.87 -51.93 -0.31 2.67 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -35.31 408.08 -11.42 -46.73 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -9.70 Total: 2.90 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.08 Total: 2.34 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.86 Total: -66.80 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.31 -11.42 -46.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070399977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.254 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds