Wall clock time and date at job start Wed Apr 1 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48673 * 111.11205 * 2 1 4 4 C 1.54386 * 104.67194 * 201.09976 * 3 2 1 5 5 C 1.54259 * 105.06140 * 23.76863 * 4 3 2 6 6 C 1.48560 * 110.99985 * 244.58056 * 2 1 3 7 7 H 1.09003 * 110.41216 * 40.14284 * 6 2 1 8 8 C 1.50703 * 110.41106 * 277.81948 * 6 2 1 9 9 O 1.21278 * 119.99985 * 343.05460 * 8 6 2 10 10 N 1.34779 * 119.99944 * 163.05171 * 8 6 2 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.35309 * 126.04069 * 259.68690 * 12 11 10 14 14 N 1.34950 * 107.74771 * 179.87575 * 13 12 11 15 15 H 0.96997 * 126.03797 * 180.15271 * 14 13 12 16 16 N 1.40091 * 107.92222 * 0.38559 * 14 13 12 17 17 C 1.30840 * 108.20481 * 359.76444 * 16 14 13 18 18 C 1.50701 * 125.89749 * 179.97438 * 17 16 14 19 19 H 1.08993 * 110.63926 * 181.70785 * 18 17 16 20 20 C 1.55159 * 110.71851 * 305.04696 * 18 17 16 21 21 C 1.54911 * 101.58117 * 153.86563 * 20 18 17 22 22 N 1.47427 * 104.83001 * 322.98675 * 21 20 18 23 23 C 1.36934 * 125.64704 * 204.16004 * 22 21 20 24 24 H 1.08004 * 120.00301 * 179.97438 * 23 22 21 25 25 C 1.38814 * 120.00068 * 359.96539 * 23 22 21 26 26 N 1.31614 * 120.00167 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99880 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47219 * 90.00173 * 27 25 23 29 29 H 1.48504 * 109.47216 * 209.99707 * 27 25 23 30 30 H 1.48498 * 109.47471 * 329.99681 * 27 25 23 31 31 C 1.47023 * 108.70209 * 24.13107 * 22 21 20 32 32 H 1.08995 * 109.47376 * 175.41762 * 1 2 3 33 33 H 1.09005 * 109.47161 * 295.42284 * 1 2 3 34 34 H 1.09001 * 109.46813 * 55.41609 * 1 2 3 35 35 H 1.08997 * 110.44541 * 82.25613 * 3 2 1 36 36 H 1.08999 * 110.40018 * 319.91623 * 3 2 1 37 37 H 1.08996 * 110.31969 * 264.86853 * 4 3 2 38 38 H 1.09000 * 110.31917 * 142.66725 * 4 3 2 39 39 H 1.08996 * 110.32300 * 241.10437 * 5 4 3 40 40 H 1.09003 * 110.40886 * 118.93646 * 5 4 3 41 41 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 42 42 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 43 43 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 44 44 H 1.08000 * 126.12641 * 0.02621 * 13 12 11 45 45 H 1.09002 * 111.00209 * 271.93476 * 20 18 17 46 46 H 1.08999 * 111.00711 * 35.79122 * 20 18 17 47 47 H 1.08990 * 110.36641 * 204.15205 * 21 20 18 48 48 H 1.09000 * 110.46120 * 81.87523 * 21 20 18 49 49 H 0.96997 * 120.00550 * 180.02562 * 26 25 23 50 50 H 1.09003 * 109.87894 * 239.51660 * 31 22 21 51 51 H 1.09005 * 109.88279 * 118.35580 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4452 1.2498 -0.5377 5 6 3.4431 -0.0542 -1.3617 6 6 2.0014 -0.5953 -1.2527 7 1 1.4085 -0.2730 -2.1087 8 6 2.0103 -2.0993 -1.1574 9 8 1.9151 -2.6390 -0.0755 10 7 2.1241 -2.8446 -2.2746 11 6 2.1322 -4.3067 -2.1820 12 6 2.2683 -4.8966 -3.5621 13 6 1.2634 -5.4008 -4.3150 14 7 1.7955 -5.8253 -5.4802 15 1 1.3096 -6.2309 -6.2152 16 7 3.1745 -5.5818 -5.4385 17 6 3.4567 -5.0253 -4.2884 18 6 4.8257 -4.5972 -3.8262 19 1 4.7802 -4.1899 -2.8163 20 6 5.8252 -5.7817 -3.9001 21 6 7.1745 -5.0398 -4.0699 22 7 6.8647 -3.8862 -4.9340 23 6 7.7601 -3.2204 -5.7278 24 1 7.4326 -2.3835 -6.3269 25 6 9.0887 -3.6210 -5.7624 26 7 9.4880 -4.6404 -5.0319 27 14 10.3099 -2.7132 -6.8459 28 1 10.9238 -1.6016 -6.0760 29 1 11.3709 -3.6524 -7.2903 30 1 9.6062 -2.1641 -8.0326 31 6 5.4350 -3.5693 -4.8027 32 1 -0.3634 -1.0243 -0.0821 33 1 -0.3634 0.4412 0.9282 34 1 -0.3633 0.5833 -0.8461 35 1 2.0132 1.7917 1.0120 36 1 1.4121 2.0229 -0.6578 37 1 4.1520 1.1745 0.2886 38 1 3.6942 2.0993 -1.1737 39 1 4.1489 -0.7697 -0.9399 40 1 3.6918 0.1534 -2.4024 41 1 2.1998 -2.4130 -3.1399 42 1 1.1998 -4.6475 -1.7319 43 1 2.9718 -4.6270 -1.5651 44 1 0.2217 -5.4519 -4.0347 45 1 5.8120 -6.3622 -2.9777 46 1 5.6167 -6.4156 -4.7620 47 1 7.9061 -5.6886 -4.5514 48 1 7.5471 -4.7007 -3.1034 49 1 10.4164 -4.9201 -5.0557 50 1 4.9474 -3.6468 -5.7745 51 1 5.3136 -2.5621 -4.4040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070399977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:41 Heat of formation + Delta-G solvation = 50.070131 kcal Electronic energy + Delta-G solvation = -31263.343858 eV Core-core repulsion = 27198.961033 eV Total energy + Delta-G solvation = -4064.382825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35246 -41.05793 -39.02148 -38.87359 -35.93158 -34.88598 -33.18632 -32.78018 -31.94007 -30.90406 -30.20357 -29.13568 -26.83106 -26.61223 -26.38937 -23.43383 -23.15019 -22.05895 -21.87728 -21.36504 -20.87693 -20.02832 -18.98914 -18.82989 -18.13919 -17.13433 -16.88629 -16.74214 -16.35180 -15.88938 -15.74586 -15.69588 -15.36655 -15.09413 -14.85970 -14.70775 -14.39787 -14.23985 -14.00266 -13.72654 -13.58159 -13.39341 -13.34088 -13.17149 -12.93179 -12.91587 -12.70583 -12.54211 -12.33725 -12.31059 -12.01695 -12.00652 -11.89081 -11.72041 -11.63392 -11.56673 -11.18020 -10.82571 -10.72556 -10.28957 -9.98826 -9.56256 -9.40710 -8.86012 -7.74794 -5.19159 0.96731 1.46932 1.49707 1.51806 1.58280 1.70384 2.02870 2.39251 2.51890 3.17415 3.34554 3.55603 3.63024 3.66761 3.77434 3.83983 3.98179 4.04302 4.09446 4.15861 4.20193 4.27011 4.36214 4.44880 4.49879 4.55371 4.58428 4.67035 4.70168 4.73179 4.81090 4.89655 4.90416 4.99554 5.04301 5.04642 5.06181 5.12840 5.15450 5.24292 5.35009 5.48252 5.51952 5.57909 5.65847 5.78136 5.82045 6.02888 6.32322 6.51328 6.66744 6.77965 7.12519 7.35786 7.80031 8.44894 9.27491 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.003213 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.898138 B = 8712.750030 C =11042.857291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.520 5.520 3 C 0.035 3.965 4 C -0.122 4.122 5 C -0.116 4.116 6 C 0.047 3.953 7 H 0.095 0.905 8 C 0.520 3.480 9 O -0.566 6.566 10 N -0.715 5.715 11 C 0.210 3.790 12 C -0.271 4.271 13 C 0.107 3.893 14 N -0.465 5.465 15 H 0.454 0.546 16 N -0.324 5.324 17 C 0.105 3.895 18 C -0.011 4.011 19 H 0.094 0.906 20 C -0.118 4.118 21 C 0.156 3.844 22 N -0.624 5.624 23 C -0.237 4.237 24 H 0.081 0.919 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.981 3.019 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.269 1.269 31 C 0.153 3.847 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.408 0.592 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.071 0.929 48 H -0.009 1.009 49 H 0.247 0.753 50 H 0.020 0.980 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.525 7.073 5.136 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.155 4.155 6 C -0.065 4.065 7 H 0.113 0.887 8 C 0.306 3.694 9 O -0.444 6.444 10 N -0.367 5.367 11 C 0.086 3.914 12 C -0.283 4.283 13 C -0.043 4.043 14 N -0.173 5.173 15 H 0.301 0.699 16 N -0.147 5.147 17 C -0.062 4.062 18 C -0.031 4.031 19 H 0.112 0.888 20 C -0.157 4.157 21 C 0.031 3.969 22 N -0.350 5.350 23 C -0.366 4.366 24 H 0.098 0.902 25 C -0.260 4.260 26 N -0.600 5.600 27 Si 0.809 3.191 28 H -0.212 1.212 29 H -0.221 1.221 30 H -0.194 1.194 31 C 0.027 3.973 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.243 0.757 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.241 0.759 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.009 0.991 49 H 0.056 0.944 50 H 0.038 0.962 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -23.802 5.950 5.198 25.079 hybrid contribution 0.357 0.742 -1.119 1.389 sum -23.445 6.692 4.079 24.720 Atomic orbital electron populations 1.22503 0.86646 1.01713 1.02153 1.65043 1.09466 1.16293 1.33704 1.23215 0.95105 0.88616 1.02254 1.22306 0.96796 0.97082 0.99772 1.22263 0.93370 0.97725 1.02102 1.22655 0.98660 0.91013 0.94170 0.88703 1.20679 0.75398 0.89645 0.83655 1.90674 1.50248 1.74414 1.29095 1.46145 1.74115 1.06993 1.09453 1.19254 1.02019 0.78641 0.91522 1.19913 0.92052 1.16223 1.00151 1.23013 1.00707 0.95018 0.85544 1.46348 1.05456 1.49251 1.16270 0.69886 1.77441 0.92967 1.23011 1.21303 1.21865 0.95435 0.97015 0.91895 1.20464 0.88080 0.95906 0.98693 0.88781 1.22866 0.95195 0.96487 1.01177 1.21686 0.94327 0.88982 0.91870 1.44760 1.04550 1.35335 1.50324 1.19448 0.89484 1.09960 1.17723 0.90157 1.25642 0.98838 0.99759 1.01800 1.70058 1.15462 1.29621 1.44827 0.85038 0.78396 0.77231 0.78425 1.21172 1.22054 1.19429 1.21321 0.84359 0.95682 0.95959 0.92585 0.90219 0.93640 0.89311 0.91848 0.91401 0.88980 0.92825 0.88874 0.75655 0.89722 0.92841 0.75870 0.90149 0.92525 0.91063 0.99108 0.94367 0.96207 0.95438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.45 127.69 1.21 1.50 16 2 N -0.52 -10.67 4.93 -886.70 -4.37 -15.05 16 3 C 0.04 0.54 6.50 86.43 0.56 1.10 16 4 C -0.12 -1.97 7.00 31.49 0.22 -1.75 16 5 C -0.12 -2.29 6.54 31.49 0.21 -2.08 16 6 C 0.05 0.92 2.68 44.32 0.12 1.04 16 7 H 0.10 1.38 7.97 -2.39 -0.02 1.36 16 8 C 0.52 12.89 6.71 87.66 0.59 13.48 16 9 O -0.57 -18.91 16.58 -3.02 -0.05 -18.96 16 10 N -0.71 -14.80 5.55 -466.78 -2.59 -17.38 16 11 C 0.21 4.50 5.67 85.63 0.49 4.99 16 12 C -0.27 -5.85 5.47 -20.14 -0.11 -5.96 16 13 C 0.11 1.57 11.90 83.54 0.99 2.57 16 14 N -0.47 -8.60 7.36 -57.59 -0.42 -9.03 16 15 H 0.45 5.16 8.96 -213.33 -1.91 3.24 16 16 N -0.32 -9.87 12.33 -47.38 -0.58 -10.45 16 17 C 0.10 3.13 5.76 43.10 0.25 3.38 16 18 C -0.01 -0.38 3.36 -10.35 -0.03 -0.42 16 19 H 0.09 3.23 7.26 -2.39 -0.02 3.22 16 20 C -0.12 -4.81 6.52 31.99 0.21 -4.61 16 21 C 0.16 8.13 5.89 86.86 0.51 8.64 16 22 N -0.62 -33.45 3.39 -691.98 -2.35 -35.80 16 23 C -0.24 -13.68 10.27 84.03 0.86 -12.82 16 24 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 25 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 26 N -0.95 -58.10 10.09 21.65 0.22 -57.88 16 27 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 30 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 31 C 0.15 6.57 6.83 86.73 0.59 7.16 16 32 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 0.55 7.98 -2.39 -0.02 0.54 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 0.74 7.91 -2.39 -0.02 0.72 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.41 7.23 8.46 -92.71 -0.78 6.44 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.40 7.70 -2.39 -0.02 1.39 16 44 H 0.22 0.99 8.06 -2.91 -0.02 0.96 16 45 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.06 2.42 7.88 -2.39 -0.02 2.40 16 47 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.02 0.89 7.68 -2.39 -0.02 0.87 16 51 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -80.50 408.08 -2.75 -83.25 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -1.75 Total: 20.06 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.13 Total: 12.72 kcal Atomic # 7 Polarization: -135.49 SS G_CDS: -10.10 Total: -145.59 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -80.50 -2.75 -83.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070399977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.321 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds