Wall clock time and date at job start Wed Apr 1 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47906 * 111.00163 * 2 1 4 4 C 1.53997 * 107.05871 * 214.15425 * 3 2 1 5 5 C 1.54593 * 105.14126 * 1.22735 * 4 3 2 6 6 H 1.09004 * 110.72424 * 263.42176 * 5 4 3 7 7 C 1.50694 * 110.72705 * 140.31194 * 5 4 3 8 8 O 1.21284 * 119.99610 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.46508 * 119.99991 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.46954 * 180.02562 * 10 9 7 12 12 C 1.35315 * 126.03684 * 259.69034 * 11 10 9 13 13 N 1.34950 * 107.74499 * 179.87502 * 12 11 10 14 14 H 0.97000 * 126.04201 * 180.14739 * 13 12 11 15 15 N 1.40089 * 107.92597 * 0.39338 * 13 12 11 16 16 C 1.30840 * 108.20053 * 359.75200 * 15 13 12 17 17 C 1.50699 * 125.89732 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.88958 * 177.60462 * 17 16 15 19 19 C 1.55154 * 111.00495 * 53.67445 * 17 16 15 20 20 C 1.54322 * 102.94647 * 206.42669 * 19 17 16 21 21 N 1.47019 * 107.27095 * 22.19075 * 20 19 17 22 22 C 1.36934 * 125.65066 * 181.09519 * 21 20 19 23 23 H 1.08007 * 120.00226 * 179.97438 * 22 21 20 24 24 C 1.38806 * 120.00070 * 359.96329 * 22 21 20 25 25 N 1.31619 * 120.00264 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00267 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46955 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47150 * 119.99714 * 26 24 22 29 29 H 1.48500 * 109.47391 * 239.99836 * 26 24 22 30 30 C 1.47430 * 108.70313 * 1.06458 * 21 20 19 31 31 C 1.48529 * 111.00073 * 242.60690 * 2 1 3 32 32 H 1.09003 * 109.46989 * 59.87227 * 1 2 3 33 33 H 1.08997 * 109.46939 * 179.87406 * 1 2 3 34 34 H 1.08997 * 109.47220 * 299.87787 * 1 2 3 35 35 H 1.08998 * 109.91583 * 94.80499 * 3 2 1 36 36 H 1.09004 * 109.91554 * 333.51082 * 3 2 1 37 37 H 1.09005 * 110.30580 * 120.14185 * 4 3 2 38 38 H 1.09003 * 110.31005 * 242.30817 * 4 3 2 39 39 H 0.97003 * 120.00408 * 0.02562 * 9 7 5 40 40 H 1.09000 * 109.47406 * 300.00372 * 10 9 7 41 41 H 1.08999 * 109.47022 * 60.00942 * 10 9 7 42 42 H 1.08002 * 126.13055 * 0.02562 * 12 11 10 43 43 H 1.08997 * 110.72339 * 324.79190 * 19 17 16 44 44 H 1.09005 * 110.72204 * 88.06276 * 19 17 16 45 45 H 1.09004 * 109.88493 * 262.77822 * 20 19 17 46 46 H 1.08994 * 110.01692 * 141.68399 * 20 19 17 47 47 H 0.97003 * 120.00475 * 180.02562 * 25 24 22 48 48 H 1.09000 * 110.36618 * 217.02686 * 30 21 20 49 49 H 1.08997 * 110.36452 * 94.70697 * 30 21 20 50 50 H 1.08995 * 110.67216 * 41.28703 * 31 2 1 51 51 H 1.09004 * 110.66395 * 278.15418 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 1 4.1140 -0.6532 -0.6580 7 6 3.9512 -0.1302 -2.7358 8 8 4.1764 0.9048 -3.3267 9 7 4.1508 -1.3135 -3.3491 10 6 4.6394 -1.3497 -4.7299 11 6 4.7758 -2.7824 -5.1770 12 6 5.9254 -3.4941 -5.2290 13 7 5.6238 -4.7305 -5.6779 14 1 6.2518 -5.4572 -5.8139 15 7 4.2445 -4.7774 -5.9180 16 6 3.7373 -3.6094 -5.6174 17 6 2.2852 -3.2218 -5.7274 18 1 2.1269 -2.2031 -5.3735 19 6 1.3824 -4.2243 -4.9611 20 6 0.0347 -4.1142 -5.7048 21 7 0.3189 -3.5872 -7.0475 22 6 -0.6136 -3.3221 -8.0147 23 1 -0.3020 -2.9345 -8.9734 24 6 -1.9592 -3.5519 -7.7631 25 7 -2.3389 -4.0251 -6.5950 26 14 -3.2313 -3.1897 -9.0822 27 1 -2.5517 -2.6688 -10.2954 28 1 -3.9622 -4.4372 -9.4208 29 1 -4.1912 -2.1747 -8.5788 30 6 1.7740 -3.3906 -7.1800 31 6 2.0013 -0.6380 -1.2312 32 1 -0.3633 0.5158 -0.8889 33 1 -0.3633 -1.0276 -0.0023 34 1 -0.3633 0.5119 0.8910 35 1 2.2122 1.6967 1.0212 36 1 1.2758 2.0562 -0.4571 37 1 3.2136 2.0430 -1.6766 38 1 4.1471 1.6454 -0.2023 39 1 3.9710 -2.1413 -2.8765 40 1 3.9328 -0.8325 -5.3790 41 1 5.6105 -0.8577 -4.7847 42 1 6.9080 -3.1374 -4.9574 43 1 1.7814 -5.2360 -5.0337 44 1 1.2730 -3.9257 -3.9185 45 1 -0.6283 -3.4326 -5.1718 46 1 -0.4297 -5.0972 -5.7830 47 1 -3.2792 -4.1860 -6.4192 48 1 1.9841 -2.4938 -7.7628 49 1 2.2337 -4.2626 -7.6451 50 1 1.4238 -0.3322 -2.1035 51 1 2.0041 -1.7234 -1.1315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:08 Heat of formation + Delta-G solvation = 69.688187 kcal Electronic energy + Delta-G solvation = -31254.503556 eV Core-core repulsion = 27190.971434 eV Total energy + Delta-G solvation = -4063.532122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37714 -40.21454 -38.19504 -37.29985 -35.06412 -33.09191 -32.51492 -31.34305 -30.77626 -29.20081 -29.09960 -27.49933 -26.33963 -25.43547 -24.62688 -22.37638 -22.08289 -21.19359 -20.39675 -20.02663 -19.83689 -18.79193 -18.10652 -17.33083 -16.77760 -16.34480 -15.86873 -15.29326 -14.98619 -14.87827 -14.55472 -14.42034 -14.34050 -14.13486 -13.87598 -13.50718 -13.41835 -13.00648 -12.81886 -12.57607 -12.32370 -12.18915 -11.84405 -11.74455 -11.71885 -11.65724 -11.62911 -11.38113 -10.95297 -10.87151 -10.81554 -10.79862 -10.58562 -10.07961 -10.00939 -9.94193 -9.73799 -9.62570 -9.14634 -9.09897 -8.70243 -8.62347 -8.54806 -6.77437 -5.66688 -2.99499 1.80464 2.55509 2.57195 2.84661 3.34219 3.43021 3.48667 3.50964 3.87891 4.30092 4.41271 4.52332 4.64232 4.69149 4.73720 4.96744 5.07842 5.12485 5.16985 5.24866 5.29536 5.31329 5.42534 5.48458 5.49426 5.57326 5.63912 5.68419 5.73800 5.76970 5.81373 5.85177 5.91438 5.94806 5.97173 6.05707 6.37915 6.39748 6.49516 6.56446 6.59851 6.69349 6.74086 6.75134 6.97909 7.23808 7.46319 7.61147 7.68267 7.75214 7.87612 8.16384 8.30596 9.27117 9.87235 10.53548 11.45161 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007640 B = 0.003516 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3664.085899 B = 7962.703174 C =10587.183984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.118 4.118 5 C -0.114 4.114 6 H 0.107 0.893 7 C 0.521 3.479 8 O -0.542 6.542 9 N -0.720 5.720 10 C 0.201 3.799 11 C -0.262 4.262 12 C 0.076 3.924 13 N -0.481 5.481 14 H 0.438 0.562 15 N -0.281 5.281 16 C 0.122 3.878 17 C -0.031 4.031 18 H 0.090 0.910 19 C -0.130 4.130 20 C 0.178 3.822 21 N -0.605 5.605 22 C -0.225 4.225 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.910 3.090 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.149 3.851 31 C 0.045 3.955 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.402 0.598 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.174 0.826 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.025 0.975 50 H 0.056 0.944 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.156 4.861 13.685 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.245 5.245 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.135 4.135 6 H 0.125 0.875 7 C 0.306 3.694 8 O -0.419 6.419 9 N -0.371 5.371 10 C 0.077 3.923 11 C -0.274 4.274 12 C -0.074 4.074 13 N -0.187 5.187 14 H 0.282 0.718 15 N -0.103 5.103 16 C -0.046 4.046 17 C -0.052 4.052 18 H 0.108 0.892 19 C -0.169 4.169 20 C 0.054 3.946 21 N -0.331 5.331 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.022 3.978 31 C -0.084 4.084 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.236 0.764 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.192 0.808 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.043 0.957 50 H 0.074 0.926 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.994 4.136 13.249 21.942 hybrid contribution -0.461 0.501 -0.940 1.161 sum 16.534 4.637 12.309 21.127 Atomic orbital electron populations 1.22549 0.87255 1.02756 1.00997 1.64771 1.08679 1.14965 1.36076 1.22932 0.95909 0.90042 1.00589 1.22359 0.97587 0.95285 1.00366 1.22223 0.98158 0.99347 0.93822 0.87456 1.20388 0.77270 0.83507 0.88194 1.90692 1.51504 1.32912 1.66754 1.46178 1.67504 1.08424 1.15027 1.19392 0.99836 0.91217 0.81822 1.19942 0.92618 0.98231 1.16619 1.22359 0.99765 0.86267 0.98974 1.46357 1.07944 1.11484 1.52879 0.71813 1.77495 0.87314 1.21538 1.23975 1.22271 0.96585 0.90295 0.95497 1.20931 0.84991 0.99701 0.99623 0.89175 1.22921 0.97846 0.97855 0.98275 1.21144 0.90203 0.98874 0.84399 1.44471 0.99899 1.75978 1.12751 1.19114 0.86387 1.36479 0.93348 0.90418 1.24778 0.96909 1.01550 0.97229 1.69974 1.14924 1.50772 1.21341 0.86060 0.81666 0.77433 0.80726 1.20523 1.21801 1.21797 1.21528 0.86216 0.98040 0.92001 1.23213 0.92615 1.00360 0.92173 0.94903 0.90802 0.91242 0.90181 0.93398 0.89305 0.90640 0.76373 0.90470 0.91113 0.80848 0.91871 0.92367 0.93628 0.93853 0.93887 0.94396 0.95692 0.92570 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.40 60.06 0.56 0.69 16 2 N -0.52 -5.30 5.55 -238.71 -1.33 -6.63 16 3 C 0.03 0.31 6.70 -2.75 -0.02 0.29 16 4 C -0.12 -1.13 6.33 -25.37 -0.16 -1.29 16 5 C -0.11 -1.09 3.45 -89.91 -0.31 -1.40 16 6 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.52 6.16 7.13 -10.99 -0.08 6.08 16 8 O -0.54 -8.38 15.44 5.55 0.09 -8.29 16 9 N -0.72 -7.51 5.55 -61.47 -0.34 -7.85 16 10 C 0.20 2.28 5.65 -5.19 -0.03 2.25 16 11 C -0.26 -3.06 5.47 -105.05 -0.57 -3.64 16 12 C 0.08 0.69 11.90 -17.22 -0.20 0.48 16 13 N -0.48 -4.94 7.36 30.45 0.22 -4.72 16 14 H 0.44 2.99 8.96 -182.61 -1.64 1.35 16 15 N -0.28 -4.26 12.38 33.67 0.42 -3.84 16 16 C 0.12 1.83 5.89 -82.41 -0.49 1.34 16 17 C -0.03 -0.55 3.45 -89.62 -0.31 -0.86 16 18 H 0.09 1.58 7.33 -51.93 -0.38 1.20 16 19 C -0.13 -2.45 6.41 -24.90 -0.16 -2.61 16 20 C 0.18 4.37 5.38 -3.07 -0.02 4.36 16 21 N -0.60 -15.78 3.39 -170.07 -0.58 -16.35 16 22 C -0.22 -6.39 10.28 -15.06 -0.15 -6.55 16 23 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C 0.15 3.22 6.69 -2.52 -0.02 3.21 16 31 C 0.04 0.46 5.99 -1.90 -0.01 0.45 16 32 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 37 H 0.09 1.02 6.85 -51.93 -0.36 0.67 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 3.63 8.46 -40.82 -0.35 3.28 16 40 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.06 1.20 7.85 -51.93 -0.41 0.80 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 46 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.03 0.57 7.94 -51.93 -0.41 0.15 16 50 H 0.06 0.67 7.87 -51.93 -0.41 0.27 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -34.78 407.57 -11.60 -46.38 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -9.71 Total: 2.04 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.06 Total: 2.45 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -1.03 Total: -66.13 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.78 -11.60 -46.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.066 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds