Wall clock time and date at job start Wed Apr 1 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47906 * 111.00046 * 2 1 4 4 C 1.53991 * 107.05911 * 145.83972 * 3 2 1 5 5 C 1.54600 * 105.13728 * 358.78110 * 4 3 2 6 6 H 1.08997 * 110.72629 * 96.57240 * 5 4 3 7 7 C 1.50702 * 110.71963 * 219.68140 * 5 4 3 8 8 O 1.21274 * 120.00369 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00078 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00470 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.35323 * 126.03511 * 259.97193 * 11 10 9 13 13 N 1.34947 * 107.74641 * 180.02562 * 12 11 10 14 14 H 0.96996 * 126.03529 * 179.97438 * 13 12 11 15 15 N 1.40092 * 107.92300 * 359.75448 * 13 12 11 16 16 C 1.30841 * 108.20487 * 0.41504 * 15 13 12 17 17 C 1.50697 * 125.89760 * 179.85033 * 16 15 13 18 18 H 1.09004 * 110.88577 * 182.11848 * 17 16 15 19 19 C 1.55405 * 111.03892 * 305.92358 * 17 16 15 20 20 C 1.54325 * 102.82616 * 153.47058 * 19 17 16 21 21 N 1.47018 * 107.40412 * 337.97548 * 20 19 17 22 22 C 1.36936 * 125.64999 * 178.82784 * 21 20 19 23 23 H 1.08004 * 120.00405 * 180.02562 * 22 21 20 24 24 C 1.38812 * 120.00093 * 0.02562 * 22 21 20 25 25 N 1.31626 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00506 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46967 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47375 * 120.00211 * 26 24 22 29 29 H 1.48496 * 109.47606 * 240.00311 * 26 24 22 30 30 C 1.47426 * 108.70517 * 358.86539 * 21 20 19 31 31 C 1.48535 * 110.99741 * 117.39721 * 2 1 3 32 32 H 1.09001 * 109.46786 * 59.86965 * 1 2 3 33 33 H 1.08996 * 109.47236 * 179.87123 * 1 2 3 34 34 H 1.08998 * 109.47008 * 299.87908 * 1 2 3 35 35 H 1.09007 * 109.91417 * 26.49296 * 3 2 1 36 36 H 1.08994 * 109.92126 * 265.20108 * 3 2 1 37 37 H 1.08996 * 110.31304 * 239.86499 * 4 3 2 38 38 H 1.08997 * 110.39062 * 117.73343 * 4 3 2 39 39 H 0.97010 * 119.99716 * 359.97438 * 9 7 5 40 40 H 1.08996 * 109.47190 * 59.99605 * 10 9 7 41 41 H 1.09003 * 109.46829 * 299.99883 * 10 9 7 42 42 H 1.07999 * 126.12548 * 0.05426 * 12 11 10 43 43 H 1.09000 * 110.69068 * 35.18317 * 19 17 16 44 44 H 1.09002 * 110.85092 * 271.83311 * 19 17 16 45 45 H 1.09002 * 109.88192 * 218.47989 * 20 19 17 46 46 H 1.09000 * 109.88128 * 97.46841 * 20 19 17 47 47 H 0.96997 * 120.00493 * 180.02562 * 25 24 22 48 48 H 1.08999 * 110.36956 * 142.96999 * 30 21 20 49 49 H 1.09001 * 110.36709 * 265.18192 * 30 21 20 50 50 H 1.08994 * 110.66673 * 81.84333 * 31 2 1 51 51 H 1.08997 * 110.66847 * 318.71145 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0929 1.3154 6 1 4.1140 -0.6532 0.6580 7 6 3.9512 -0.1301 2.7358 8 8 4.1763 0.9047 3.3268 9 7 4.1499 -1.3135 3.3496 10 6 4.6373 -1.3498 4.7306 11 6 4.7740 -2.7824 5.1777 12 6 3.8914 -3.4651 5.9433 13 7 4.3774 -4.7117 6.1190 14 1 3.9555 -5.4223 6.6269 15 7 5.5963 -4.7998 5.4341 16 6 5.8356 -3.6413 4.8750 17 6 7.0435 -3.2942 4.0434 18 1 7.0125 -2.2507 3.7297 19 6 8.3580 -3.6039 4.8123 20 6 9.3687 -3.8585 3.6742 21 7 8.5991 -4.2255 2.4765 22 6 9.1263 -4.5081 1.2447 23 1 8.4734 -4.7681 0.4245 24 6 10.4999 -4.4605 1.0500 25 7 11.2957 -4.1442 2.0496 26 14 11.2192 -4.8466 -0.6300 27 1 10.1211 -5.1710 -1.5759 28 1 11.9703 -3.6671 -1.1300 29 1 12.1377 -6.0082 -0.5203 30 6 7.1658 -4.2380 2.8210 31 6 2.0013 -0.6381 1.2312 32 1 -0.3633 0.5159 -0.8888 33 1 -0.3633 -1.0276 -0.0023 34 1 -0.3633 0.5119 0.8911 35 1 1.2758 2.0562 0.4572 36 1 2.2122 1.6968 -1.0211 37 1 3.2136 2.0429 1.6767 38 1 4.1478 1.6461 0.2039 39 1 3.9694 -2.1413 2.8771 40 1 3.9305 -0.8322 5.3791 41 1 5.6086 -0.8580 4.7861 42 1 2.9641 -3.0811 6.3420 43 1 8.2417 -4.4936 5.4311 44 1 8.6644 -2.7499 5.4164 45 1 10.0384 -4.6735 3.9487 46 1 9.9455 -2.9539 3.4814 47 1 12.2555 -4.1105 1.9136 48 1 6.5722 -3.8598 1.9887 49 1 6.8479 -5.2467 3.0852 50 1 2.0040 -1.7235 1.1315 51 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070435857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:13 Heat of formation + Delta-G solvation = 70.129096 kcal Electronic energy + Delta-G solvation = -30983.634319 eV Core-core repulsion = 26920.121316 eV Total energy + Delta-G solvation = -4063.513003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37291 -40.23103 -38.25301 -37.26807 -35.04945 -33.07781 -32.57716 -31.33770 -30.77760 -29.25282 -29.08161 -27.49622 -26.42153 -25.48309 -24.61071 -22.42022 -22.06671 -21.28012 -20.41092 -19.96432 -19.84851 -18.78004 -18.13140 -17.30152 -16.76067 -16.43785 -15.85199 -15.33483 -15.03145 -14.89926 -14.58655 -14.42866 -14.34126 -14.17681 -13.89016 -13.53016 -13.44986 -13.13996 -12.84475 -12.54449 -12.31187 -12.18301 -11.89028 -11.83399 -11.78003 -11.68974 -11.62567 -11.43864 -10.93979 -10.87876 -10.80062 -10.78813 -10.57997 -10.06318 -9.99919 -9.92270 -9.71563 -9.60830 -9.13601 -9.08608 -8.79314 -8.63691 -8.53255 -6.76102 -5.64995 -2.98195 1.80405 2.57241 2.58397 2.84714 3.33732 3.44291 3.49552 3.52111 3.78070 4.27401 4.36623 4.53152 4.63938 4.69273 4.72260 4.90147 5.01453 5.03878 5.10559 5.12476 5.23996 5.26850 5.35048 5.42857 5.50508 5.51379 5.57486 5.58140 5.65744 5.74438 5.82463 5.88711 5.93206 5.95387 5.95833 6.06199 6.39218 6.42979 6.50174 6.50465 6.60132 6.63953 6.68169 6.75689 6.98469 7.23907 7.48483 7.62842 7.71360 7.75642 7.89850 8.18249 8.32230 9.28271 9.88611 10.55012 11.46744 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008058 B = 0.003180 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.847590 B = 8802.372104 C =11157.361485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.035 3.965 4 C -0.118 4.118 5 C -0.116 4.116 6 H 0.114 0.886 7 C 0.523 3.477 8 O -0.543 6.543 9 N -0.720 5.720 10 C 0.202 3.798 11 C -0.262 4.262 12 C 0.075 3.925 13 N -0.481 5.481 14 H 0.438 0.562 15 N -0.281 5.281 16 C 0.122 3.878 17 C -0.032 4.032 18 H 0.091 0.909 19 C -0.132 4.132 20 C 0.178 3.822 21 N -0.604 5.604 22 C -0.225 4.225 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.152 3.848 31 C 0.048 3.952 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.174 0.826 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.251 0.749 48 H 0.036 0.964 49 H 0.024 0.976 50 H 0.090 0.910 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.303 6.850 4.874 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.138 4.138 6 H 0.132 0.868 7 C 0.308 3.692 8 O -0.420 6.420 9 N -0.371 5.371 10 C 0.078 3.922 11 C -0.274 4.274 12 C -0.074 4.074 13 N -0.187 5.187 14 H 0.282 0.718 15 N -0.103 5.103 16 C -0.046 4.046 17 C -0.054 4.054 18 H 0.109 0.891 19 C -0.171 4.171 20 C 0.053 3.947 21 N -0.330 5.330 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.025 3.975 31 C -0.080 4.080 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.191 0.809 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.042 0.958 50 H 0.108 0.892 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.357 6.108 4.927 23.694 hybrid contribution -0.546 0.169 -0.092 0.579 sum -22.903 6.277 4.835 24.234 Atomic orbital electron populations 1.22527 0.87659 1.02314 1.00836 1.64752 1.08259 1.15335 1.36128 1.22932 0.95895 0.89554 1.00919 1.22361 0.97674 0.95257 1.00386 1.22252 0.97892 0.99434 0.94196 0.86832 1.20352 0.77295 0.83486 0.88032 1.90681 1.51654 1.32949 1.66707 1.46178 1.67352 1.08481 1.15089 1.19375 1.00075 0.91146 0.81593 1.19948 0.98238 0.98207 1.11019 1.22350 0.99315 0.86268 0.99497 1.46357 1.18270 1.11248 1.42794 0.71826 1.77501 0.97851 1.21648 1.13317 1.22279 0.95988 0.90118 0.96207 1.20993 0.89003 1.00543 0.94819 0.89105 1.22985 0.94787 1.00447 0.98899 1.21150 0.90790 0.99774 0.82984 1.44462 0.99404 1.81432 1.07749 1.19097 0.90508 1.39547 0.86221 0.90406 1.24797 0.95999 1.02008 0.97722 1.69982 1.02852 1.54660 1.29430 0.86056 0.78971 0.77499 0.83321 1.20512 1.21779 1.21836 1.21495 0.87816 0.95374 0.92827 1.23170 0.92966 1.00249 0.91659 0.91146 0.91126 0.95360 0.93580 0.89975 0.89388 0.90234 0.76279 0.91219 0.90502 0.80899 0.91899 0.92164 0.93890 0.93511 0.93859 0.94548 0.95784 0.89212 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.40 60.07 0.56 0.67 16 2 N -0.52 -4.72 5.55 -238.71 -1.33 -6.05 16 3 C 0.03 0.30 6.70 -2.75 -0.02 0.28 16 4 C -0.12 -1.18 6.33 -25.37 -0.16 -1.34 16 5 C -0.12 -1.17 3.45 -89.91 -0.31 -1.48 16 6 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 7 C 0.52 6.36 7.13 -10.98 -0.08 6.29 16 8 O -0.54 -8.46 15.44 5.56 0.09 -8.37 16 9 N -0.72 -7.79 5.55 -61.47 -0.34 -8.13 16 10 C 0.20 2.29 5.68 -5.20 -0.03 2.26 16 11 C -0.26 -3.07 5.47 -105.05 -0.57 -3.64 16 12 C 0.08 0.68 11.90 -17.22 -0.20 0.47 16 13 N -0.48 -4.94 7.36 30.45 0.22 -4.72 16 14 H 0.44 2.99 8.96 -182.61 -1.64 1.35 16 15 N -0.28 -4.28 12.39 33.67 0.42 -3.86 16 16 C 0.12 1.85 5.89 -82.41 -0.49 1.36 16 17 C -0.03 -0.57 3.45 -89.49 -0.31 -0.88 16 18 H 0.09 1.61 7.27 -51.93 -0.38 1.23 16 19 C -0.13 -2.60 6.43 -24.76 -0.16 -2.76 16 20 C 0.18 4.43 5.37 -3.07 -0.02 4.41 16 21 N -0.60 -15.70 3.39 -170.07 -0.58 -16.28 16 22 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 23 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -27.48 10.31 55.49 0.57 -26.91 16 26 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 C 0.15 3.21 6.69 -2.53 -0.02 3.19 16 31 C 0.05 0.42 5.99 -1.90 -0.01 0.40 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.19 8.00 -51.93 -0.42 -0.22 16 35 H 0.05 0.37 7.74 -51.92 -0.40 -0.03 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.99 6.85 -51.93 -0.36 0.64 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.90 8.46 -40.82 -0.35 3.56 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.06 1.24 7.86 -51.93 -0.41 0.83 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 46 H 0.05 1.28 7.37 -51.93 -0.38 0.89 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.02 0.54 7.94 -51.93 -0.41 0.12 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.05 0.43 7.86 -51.93 -0.41 0.02 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -34.90 407.51 -11.60 -46.50 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -9.71 Total: 1.95 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.06 Total: 2.36 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.03 Total: -65.94 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.90 -11.60 -46.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070435857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.626 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds