Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47906 * 111.00046 * 2 1 4 4 C 1.53991 * 107.05911 * 145.83972 * 3 2 1 5 5 C 1.54600 * 105.13728 * 358.78110 * 4 3 2 6 6 H 1.08997 * 110.72629 * 96.57240 * 5 4 3 7 7 C 1.50702 * 110.71963 * 219.68140 * 5 4 3 8 8 O 1.21274 * 120.00369 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00078 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00470 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.35323 * 126.03511 * 259.97193 * 11 10 9 13 13 N 1.34947 * 107.74641 * 180.02562 * 12 11 10 14 14 H 0.96996 * 126.03529 * 179.97438 * 13 12 11 15 15 N 1.40092 * 107.92300 * 359.75448 * 13 12 11 16 16 C 1.30841 * 108.20487 * 0.41504 * 15 13 12 17 17 C 1.50697 * 125.89760 * 179.85033 * 16 15 13 18 18 H 1.09004 * 110.88577 * 182.11848 * 17 16 15 19 19 C 1.55405 * 111.03892 * 305.92358 * 17 16 15 20 20 C 1.54325 * 102.82616 * 153.47058 * 19 17 16 21 21 N 1.47018 * 107.40412 * 337.97548 * 20 19 17 22 22 C 1.36936 * 125.64999 * 178.82784 * 21 20 19 23 23 H 1.08004 * 120.00405 * 180.02562 * 22 21 20 24 24 C 1.38812 * 120.00093 * 0.02562 * 22 21 20 25 25 N 1.31626 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00506 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46967 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47375 * 120.00211 * 26 24 22 29 29 H 1.48496 * 109.47606 * 240.00311 * 26 24 22 30 30 C 1.47426 * 108.70517 * 358.86539 * 21 20 19 31 31 C 1.48535 * 110.99741 * 117.39721 * 2 1 3 32 32 H 1.09001 * 109.46786 * 59.86965 * 1 2 3 33 33 H 1.08996 * 109.47236 * 179.87123 * 1 2 3 34 34 H 1.08998 * 109.47008 * 299.87908 * 1 2 3 35 35 H 1.09007 * 109.91417 * 26.49296 * 3 2 1 36 36 H 1.08994 * 109.92126 * 265.20108 * 3 2 1 37 37 H 1.08996 * 110.31304 * 239.86499 * 4 3 2 38 38 H 1.08997 * 110.39062 * 117.73343 * 4 3 2 39 39 H 0.97010 * 119.99716 * 359.97438 * 9 7 5 40 40 H 1.08996 * 109.47190 * 59.99605 * 10 9 7 41 41 H 1.09003 * 109.46829 * 299.99883 * 10 9 7 42 42 H 1.07999 * 126.12548 * 0.05426 * 12 11 10 43 43 H 1.09000 * 110.69068 * 35.18317 * 19 17 16 44 44 H 1.09002 * 110.85092 * 271.83311 * 19 17 16 45 45 H 1.09002 * 109.88192 * 218.47989 * 20 19 17 46 46 H 1.09000 * 109.88128 * 97.46841 * 20 19 17 47 47 H 0.96997 * 120.00493 * 180.02562 * 25 24 22 48 48 H 1.08999 * 110.36956 * 142.96999 * 30 21 20 49 49 H 1.09001 * 110.36709 * 265.18192 * 30 21 20 50 50 H 1.08994 * 110.66673 * 81.84333 * 31 2 1 51 51 H 1.08997 * 110.66847 * 318.71145 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0929 1.3154 6 1 4.1140 -0.6532 0.6580 7 6 3.9512 -0.1301 2.7358 8 8 4.1763 0.9047 3.3268 9 7 4.1499 -1.3135 3.3496 10 6 4.6373 -1.3498 4.7306 11 6 4.7740 -2.7824 5.1777 12 6 3.8914 -3.4651 5.9433 13 7 4.3774 -4.7117 6.1190 14 1 3.9555 -5.4223 6.6269 15 7 5.5963 -4.7998 5.4341 16 6 5.8356 -3.6413 4.8750 17 6 7.0435 -3.2942 4.0434 18 1 7.0125 -2.2507 3.7297 19 6 8.3580 -3.6039 4.8123 20 6 9.3687 -3.8585 3.6742 21 7 8.5991 -4.2255 2.4765 22 6 9.1263 -4.5081 1.2447 23 1 8.4734 -4.7681 0.4245 24 6 10.4999 -4.4605 1.0500 25 7 11.2957 -4.1442 2.0496 26 14 11.2192 -4.8466 -0.6300 27 1 10.1211 -5.1710 -1.5759 28 1 11.9703 -3.6671 -1.1300 29 1 12.1377 -6.0082 -0.5203 30 6 7.1658 -4.2380 2.8210 31 6 2.0013 -0.6381 1.2312 32 1 -0.3633 0.5159 -0.8888 33 1 -0.3633 -1.0276 -0.0023 34 1 -0.3633 0.5119 0.8911 35 1 1.2758 2.0562 0.4572 36 1 2.2122 1.6968 -1.0211 37 1 3.2136 2.0429 1.6767 38 1 4.1478 1.6461 0.2039 39 1 3.9694 -2.1413 2.8771 40 1 3.9305 -0.8322 5.3791 41 1 5.6086 -0.8580 4.7861 42 1 2.9641 -3.0811 6.3420 43 1 8.2417 -4.4936 5.4311 44 1 8.6644 -2.7499 5.4164 45 1 10.0384 -4.6735 3.9487 46 1 9.9455 -2.9539 3.4814 47 1 12.2555 -4.1105 1.9136 48 1 6.5722 -3.8598 1.9887 49 1 6.8479 -5.2467 3.0852 50 1 2.0040 -1.7235 1.1315 51 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070435857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = 43.776993 kcal Electronic energy + Delta-G solvation = -30984.777032 eV Core-core repulsion = 26920.121316 eV Total energy + Delta-G solvation = -4064.655716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33874 -41.10563 -39.04660 -39.01886 -36.01788 -34.86970 -33.35019 -32.75641 -31.74264 -30.89414 -29.99085 -29.16301 -27.15222 -26.60275 -26.23863 -23.49831 -23.16743 -21.98127 -21.96375 -21.37444 -20.74617 -20.09678 -18.99271 -18.79529 -18.14803 -17.19925 -16.79857 -16.75036 -16.36965 -16.07465 -15.81248 -15.74934 -15.36072 -15.16502 -14.91719 -14.57334 -14.24209 -14.11575 -14.00520 -13.88597 -13.71579 -13.68152 -13.56549 -13.13235 -12.84977 -12.72904 -12.48923 -12.47054 -12.38561 -12.29256 -12.18057 -11.96833 -11.91860 -11.73911 -11.64152 -11.63837 -11.24418 -10.98090 -10.70369 -10.26440 -10.01710 -9.54612 -9.42989 -8.88695 -7.82920 -5.18986 0.97443 1.46903 1.48434 1.52536 1.58904 1.64432 2.03974 2.47271 2.51587 3.10955 3.35327 3.51464 3.54327 3.64639 3.73341 3.87754 3.94144 4.04606 4.14771 4.18183 4.21913 4.30524 4.35178 4.43349 4.54395 4.54694 4.56918 4.64454 4.69609 4.72045 4.80343 4.87249 4.88898 4.96455 5.00349 5.03536 5.05357 5.10262 5.16445 5.20315 5.37075 5.46663 5.50748 5.58558 5.66160 5.76682 5.83451 6.02822 6.20669 6.52343 6.60413 6.78142 7.11316 7.27199 7.78331 8.43800 9.27953 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008058 B = 0.003180 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.847590 B = 8802.372104 C =11157.361485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.534 5.534 3 C 0.039 3.961 4 C -0.119 4.119 5 C -0.114 4.114 6 H 0.113 0.887 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.207 3.793 11 C -0.272 4.272 12 C 0.109 3.891 13 N -0.464 5.464 14 H 0.455 0.545 15 N -0.323 5.323 16 C 0.106 3.894 17 C -0.012 4.012 18 H 0.090 0.910 19 C -0.118 4.118 20 C 0.187 3.813 21 N -0.625 5.625 22 C -0.240 4.240 23 H 0.085 0.915 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.979 3.021 27 H -0.263 1.263 28 H -0.291 1.291 29 H -0.293 1.293 30 C 0.152 3.848 31 C 0.055 3.945 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.410 0.590 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.225 0.775 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.004 0.996 46 H 0.014 0.986 47 H 0.246 0.754 48 H 0.046 0.954 49 H 0.018 0.982 50 H 0.102 0.898 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.605 6.584 5.075 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.259 5.259 3 C -0.089 4.089 4 C -0.158 4.158 5 C -0.136 4.136 6 H 0.131 0.869 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.361 5.361 10 C 0.083 3.917 11 C -0.284 4.284 12 C -0.041 4.041 13 N -0.172 5.172 14 H 0.302 0.698 15 N -0.146 5.146 16 C -0.061 4.061 17 C -0.033 4.033 18 H 0.108 0.892 19 C -0.157 4.157 20 C 0.062 3.938 21 N -0.352 5.352 22 C -0.369 4.369 23 H 0.103 0.897 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.808 3.192 27 H -0.187 1.187 28 H -0.218 1.218 29 H -0.221 1.221 30 C 0.026 3.974 31 C -0.073 4.073 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.241 0.759 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.022 0.978 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.120 0.880 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.706 5.798 5.130 26.846 hybrid contribution 0.403 0.202 -0.090 0.460 sum -25.303 6.000 5.040 26.488 Atomic orbital electron populations 1.22579 0.86417 1.03032 1.01343 1.64779 1.09535 1.15307 1.36248 1.22903 0.95223 0.89830 1.00953 1.22334 0.98506 0.94956 0.99986 1.22244 0.98974 0.99643 0.92768 0.86850 1.20667 0.76664 0.83175 0.88584 1.90664 1.53453 1.34260 1.67732 1.46141 1.66446 1.08428 1.15090 1.19299 0.99392 0.91058 0.81988 1.19903 0.98062 0.98108 1.12347 1.23004 0.99659 0.84759 0.96710 1.46334 1.16757 1.12423 1.41704 0.69817 1.77400 1.00456 1.22070 1.14670 1.21803 0.95903 0.91377 0.97029 1.20638 0.89668 0.99543 0.93473 0.89153 1.22789 0.94497 1.01218 0.97205 1.20871 0.91530 0.96676 0.84702 1.44772 1.01702 1.81253 1.07433 1.19519 0.91029 1.38944 0.87391 0.89730 1.25683 0.96485 1.02469 1.01465 1.70210 1.02642 1.55914 1.31447 0.84993 0.78225 0.76810 0.79218 1.18725 1.21847 1.22056 1.21580 0.85232 0.95876 0.94665 1.23149 0.91614 1.00840 0.91717 0.90471 0.90323 0.95027 0.92982 0.89445 0.90941 0.90479 0.75432 0.89516 0.92868 0.75865 0.91858 0.90309 0.97799 0.96782 0.94459 0.93556 0.96437 0.87980 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.40 127.69 1.20 1.37 16 2 N -0.53 -8.68 5.55 -909.15 -5.05 -13.73 16 3 C 0.04 0.62 6.70 86.44 0.58 1.20 16 4 C -0.12 -2.34 6.33 31.47 0.20 -2.14 16 5 C -0.11 -2.21 3.45 -10.33 -0.04 -2.25 16 6 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 7 C 0.52 12.30 7.13 87.66 0.63 12.92 16 8 O -0.58 -18.05 15.44 -3.01 -0.05 -18.09 16 9 N -0.71 -14.20 5.55 -466.80 -2.59 -16.79 16 10 C 0.21 4.27 5.68 85.63 0.49 4.75 16 11 C -0.27 -5.59 5.47 -20.14 -0.11 -5.70 16 12 C 0.11 1.45 11.90 83.54 0.99 2.45 16 13 N -0.46 -7.83 7.36 -57.59 -0.42 -8.25 16 14 H 0.45 4.40 8.96 -213.33 -1.91 2.49 16 15 N -0.32 -9.19 12.39 -47.39 -0.59 -9.77 16 16 C 0.11 3.03 5.89 43.10 0.25 3.28 16 17 C -0.01 -0.43 3.45 -10.06 -0.03 -0.46 16 18 H 0.09 3.21 7.27 -2.39 -0.02 3.19 16 19 C -0.12 -4.73 6.43 31.87 0.21 -4.52 16 20 C 0.19 9.80 5.37 86.73 0.47 10.27 16 21 N -0.63 -33.46 3.39 -691.97 -2.35 -35.81 16 22 C -0.24 -13.83 10.28 84.03 0.86 -12.96 16 23 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 24 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 25 N -0.95 -59.18 10.31 21.65 0.22 -58.95 16 26 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 30 C 0.15 6.47 6.69 86.86 0.58 7.05 16 31 C 0.05 0.85 5.99 86.65 0.52 1.36 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.03 0.36 8.00 -2.39 -0.02 0.34 16 35 H 0.05 0.77 7.74 -2.38 -0.02 0.75 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.66 6.85 -2.39 -0.02 1.64 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 7.08 8.46 -92.70 -0.78 6.29 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.37 7.69 -2.39 -0.02 1.35 16 42 H 0.22 0.72 8.06 -2.91 -0.02 0.69 16 43 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 44 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 45 H 0.00 0.22 7.51 -2.39 -0.02 0.20 16 46 H 0.01 0.81 7.37 -2.39 -0.02 0.79 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 49 H 0.02 0.78 7.94 -2.39 -0.02 0.77 16 50 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.05 0.77 7.86 -2.39 -0.02 0.75 16 Total: -1.00 -79.28 407.51 -3.29 -82.57 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -1.75 Total: 16.87 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 7.26 Total: 13.09 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -10.77 Total: -143.30 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -79.28 -3.29 -82.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070435857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.343 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds